Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00427 * 2 1 4 4 H 1.48500 * 109.46936 * 240.00136 * 3 2 1 5 5 H 1.48503 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47115 * 120.00021 * 3 2 1 7 7 C 1.37880 * 119.99411 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 175.14247 * 7 2 1 9 9 C 1.50702 * 120.00225 * 355.42108 * 7 2 1 10 10 C 1.53004 * 115.54830 * 274.92669 * 9 7 2 11 11 N 1.46900 * 109.47039 * 296.30704 * 10 9 7 12 12 C 1.46896 * 110.99985 * 174.87700 * 11 10 9 13 13 C 1.50699 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.39869 * 126.03943 * 269.69264 * 13 12 11 15 15 N 1.30845 * 108.20448 * 179.81851 * 14 13 12 16 16 N 1.40092 * 108.20175 * 0.43376 * 15 14 13 17 17 C 1.46501 * 126.03429 * 179.69668 * 16 15 14 18 18 C 1.52995 * 109.47095 * 305.02855 * 17 16 15 19 19 F 1.39905 * 109.46617 * 175.00099 * 18 17 16 20 20 F 1.39895 * 109.47034 * 294.99554 * 18 17 16 21 21 C 1.34952 * 107.92344 * 359.72222 * 16 15 14 22 22 C 1.52992 * 117.49932 * 129.25596 * 9 7 2 23 23 C 1.52992 * 117.50106 * 60.59321 * 9 7 2 24 24 H 0.96999 * 119.99153 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47140 * 56.30262 * 10 9 7 26 26 H 1.08993 * 109.47118 * 176.30444 * 10 9 7 27 27 H 1.00898 * 110.99671 * 298.82875 * 11 10 9 28 28 H 1.09003 * 109.46912 * 299.99227 * 12 11 10 29 29 H 1.08999 * 109.47563 * 59.99871 * 12 11 10 30 30 H 1.07995 * 125.89941 * 359.97438 * 14 13 12 31 31 H 1.08998 * 109.46520 * 65.03111 * 17 16 15 32 32 H 1.09004 * 109.46528 * 185.02580 * 17 16 15 33 33 H 1.08998 * 109.47577 * 55.00285 * 18 17 16 34 34 H 1.08001 * 126.12029 * 179.97438 * 21 16 15 35 35 H 1.08997 * 117.50184 * 0.02562 * 22 9 7 36 36 H 1.09003 * 117.49948 * 145.01909 * 22 9 7 37 37 H 1.09007 * 117.50107 * 214.98374 * 23 9 7 38 38 H 1.09000 * 117.49989 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1960 -0.0787 9 6 1.2545 -2.4971 0.1053 10 6 0.9187 -2.9527 1.5268 11 7 2.1623 -3.2130 2.2642 12 6 1.8831 -3.5356 3.6698 13 6 3.1796 -3.7964 4.3924 14 6 3.8122 -5.0367 4.5260 15 7 4.9125 -4.8625 5.2124 16 7 5.0098 -3.5055 5.5463 17 6 6.0882 -2.8831 6.3184 18 6 6.2379 -3.6052 7.6589 19 9 7.3397 -3.0862 8.3474 20 9 5.0805 -3.4171 8.4217 21 6 3.9345 -2.8730 5.0316 22 6 1.5728 -3.5804 -0.9271 23 6 0.2451 -2.8218 -0.9975 24 1 -0.4849 0.8401 -0.0004 25 1 0.3521 -2.1720 2.0342 26 1 0.3235 -3.8648 1.4849 27 1 2.6968 -3.9468 1.8240 28 1 1.3673 -2.6980 4.1393 29 1 1.2542 -4.4244 3.7207 30 1 3.4556 -5.9755 4.1288 31 1 7.0220 -2.9545 5.7608 32 1 5.8497 -1.8343 6.4951 33 1 6.3882 -4.6703 7.4831 34 1 3.7156 -1.8187 5.1153 35 1 2.3249 -3.3509 -1.6819 36 1 1.5426 -4.6177 -0.5938 37 1 -0.6581 -3.3604 -0.7105 38 1 0.1231 -2.0929 -1.7987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353289816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -15.100481 kcal Electronic energy + Delta-G solvation = -21848.395799 eV Core-core repulsion = 18170.415784 eV Total energy + Delta-G solvation = -3677.980015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.09901 -48.11791 -42.15602 -38.74484 -36.22030 -34.66862 -33.82816 -31.49247 -30.12935 -27.75350 -26.71901 -24.79414 -24.21485 -22.76005 -21.90627 -21.21322 -20.75774 -18.88544 -18.55351 -18.09420 -17.72519 -17.05113 -16.66481 -16.22097 -15.89678 -15.46825 -15.15129 -15.06122 -14.95353 -14.79381 -14.48241 -14.26282 -14.07224 -13.72085 -13.43294 -13.12011 -13.05699 -12.90200 -12.73397 -12.53864 -12.31959 -12.23709 -11.94276 -11.51242 -11.18275 -10.82213 -10.41218 -10.27752 -9.88383 -9.42861 -8.90151 -7.98083 -6.04701 0.85674 1.35740 1.46248 1.47004 1.54132 1.81964 2.51548 2.53897 3.16305 3.31599 3.40598 3.49639 3.60643 3.81505 3.86152 4.01271 4.25280 4.32295 4.39086 4.45989 4.53814 4.63954 4.77553 4.80562 4.85126 4.95989 5.05590 5.15205 5.29335 5.36268 5.67147 5.72924 5.78475 5.93526 5.96812 6.45714 6.58786 6.65494 6.84742 6.98622 7.60108 9.10014 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003622 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.875600 B = 7728.965800 C = 8663.958617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.477 4.477 8 H 0.045 0.955 9 C 0.026 3.974 10 C 0.123 3.877 11 N -0.675 5.675 12 C 0.142 3.858 13 C -0.236 4.236 14 C 0.062 3.938 15 N -0.322 5.322 16 N -0.383 5.383 17 C 0.088 3.912 18 C 0.258 3.742 19 F -0.200 7.200 20 F -0.215 7.215 21 C 0.080 3.920 22 C -0.191 4.191 23 C -0.162 4.162 24 H 0.255 0.745 25 H 0.040 0.960 26 H 0.010 0.990 27 H 0.336 0.664 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.203 0.797 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.189 0.811 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -8.348 13.794 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.007 4.007 11 N -0.306 5.306 12 C 0.012 3.988 13 C -0.248 4.248 14 C -0.124 4.124 15 N -0.143 5.143 16 N -0.166 5.166 17 C -0.034 4.034 18 C 0.203 3.797 19 F -0.182 7.182 20 F -0.196 7.196 21 C -0.066 4.066 22 C -0.228 4.228 23 C -0.200 4.200 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.154 0.846 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.220 0.780 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.206 0.794 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.220 -8.019 14.551 20.048 hybrid contribution -0.959 0.750 -0.541 1.332 sum 10.261 -7.269 14.010 18.826 Atomic orbital electron populations 1.70117 1.06815 1.26524 1.51785 1.25547 0.95456 1.01426 0.95218 0.85858 0.78477 0.80156 0.78494 1.20314 1.21467 1.19875 1.20488 0.92104 0.90173 1.48760 0.93694 1.18953 0.98071 0.93073 0.87419 1.21179 0.89646 0.95863 0.93967 1.60222 1.20345 1.48541 1.01459 1.20059 0.91832 0.99066 0.87829 1.20055 1.01951 0.93181 1.09585 1.24157 0.91885 0.99573 0.96828 1.77188 1.21492 0.94031 1.21556 1.48298 1.18997 1.06152 1.43143 1.22843 0.92064 0.98854 0.89673 1.22226 0.71226 1.01117 0.85081 1.93008 1.54103 1.89502 1.81545 1.92993 1.51204 1.96889 1.78556 1.22668 0.87547 0.99957 0.96421 1.22971 0.98741 0.96421 1.04665 1.22390 0.91954 1.01874 1.03825 0.93602 0.94108 0.97155 0.84589 0.91818 0.94180 0.78032 0.84767 0.84484 0.85167 0.79440 0.91071 0.89202 0.91131 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.07 12.65 21.45 0.27 -51.80 16 2 C 0.02 1.21 5.43 84.65 0.46 1.67 16 3 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.48 -25.79 8.71 25.60 0.22 -25.56 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 9 C 0.03 1.22 1.64 -52.93 -0.09 1.13 16 10 C 0.12 5.20 5.51 86.30 0.48 5.67 16 11 N -0.67 -24.49 6.34 -517.94 -3.29 -27.78 16 12 C 0.14 4.18 6.16 85.56 0.53 4.71 16 13 C -0.24 -6.22 5.61 -20.14 -0.11 -6.33 16 14 C 0.06 1.48 11.96 85.23 1.02 2.50 16 15 N -0.32 -7.86 12.34 -57.02 -0.70 -8.56 16 16 N -0.38 -8.34 3.66 -348.06 -1.27 -9.61 16 17 C 0.09 1.25 6.70 86.38 0.58 1.83 16 18 C 0.26 3.97 5.43 71.98 0.39 4.36 16 19 F -0.20 -3.26 17.34 44.97 0.78 -2.48 16 20 F -0.21 -4.53 17.32 44.97 0.78 -3.76 16 21 C 0.08 1.94 11.36 83.54 0.95 2.89 16 22 C -0.19 -7.95 9.96 30.61 0.30 -7.64 16 23 C -0.16 -7.59 9.15 30.61 0.28 -7.31 16 24 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.04 1.96 8.13 -2.39 -0.02 1.94 16 26 H 0.01 0.41 8.10 -2.39 -0.02 0.39 16 27 H 0.34 11.50 8.78 -89.70 -0.79 10.71 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.14 1.45 8.07 -2.39 -0.02 1.43 16 33 H 0.13 1.81 8.05 -2.39 -0.02 1.79 16 34 H 0.19 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 3.07 8.14 -2.38 -0.02 3.06 16 38 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -64.25 338.50 3.88 -60.37 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.28 Total: 19.96 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 5.01 Total: -22.08 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -4.99 Total: -97.75 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 1.56 Total: -6.24 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.25 3.88 -60.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353289816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.269 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds