Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00235 * 269.99530 * 10 9 7 12 12 C 1.53008 * 109.46926 * 90.00466 * 11 10 9 13 13 C 1.52999 * 117.49669 * 243.74916 * 12 11 10 14 14 C 1.52996 * 117.49911 * 175.08701 * 12 11 10 15 15 C 1.34783 * 120.00107 * 90.00402 * 10 9 7 16 16 O 1.21284 * 119.99626 * 359.97438 * 15 10 9 17 17 C 1.50696 * 120.00310 * 179.97438 * 15 10 9 18 18 H 1.09003 * 112.50756 * 50.31993 * 17 15 10 19 19 C 1.52885 * 113.16644 * 180.22581 * 17 15 10 20 20 C 1.51427 * 84.73080 * 115.22374 * 19 17 15 21 21 C 1.38952 * 145.52840 * 179.97438 * 20 19 17 22 22 C 1.37984 * 120.32247 * 180.02562 * 21 20 19 23 23 C 1.38240 * 120.17936 * 359.97438 * 22 21 20 24 24 C 1.38174 * 119.74416 * 0.02562 * 23 22 21 25 25 C 1.38244 * 120.13114 * 0.02562 * 24 23 22 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.08998 * 109.47569 * 210.00215 * 11 10 9 30 30 H 1.08997 * 109.47185 * 330.00886 * 11 10 9 31 31 H 1.09001 * 115.54622 * 29.41886 * 12 11 10 32 32 H 1.08999 * 117.50097 * 359.97438 * 13 12 11 33 33 H 1.09005 * 117.49726 * 145.02031 * 13 12 11 34 34 H 1.08996 * 117.49894 * 214.97771 * 14 12 11 35 35 H 1.08997 * 117.50079 * 0.02562 * 14 12 11 36 36 H 1.08996 * 113.98574 * 229.16476 * 19 17 15 37 37 H 1.08996 * 113.98632 * 1.27785 * 19 17 15 38 38 H 1.07990 * 119.83954 * 0.02792 * 21 20 19 39 39 H 1.07998 * 119.90711 * 179.97438 * 22 21 20 40 40 H 1.07990 * 120.12522 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.93370 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2681 12 6 3.9413 -3.4258 -1.7098 13 6 3.8708 -2.6265 -3.0125 14 6 4.6611 -3.9364 -2.9596 15 6 2.6410 -4.1249 1.1678 16 8 2.2472 -3.6637 2.2181 17 6 3.6199 -5.2706 1.1678 18 1 4.4801 -5.0845 0.5248 19 6 4.0065 -5.7313 2.5734 20 6 3.3187 -7.0240 2.1876 21 6 2.9655 -8.3020 2.6033 22 6 2.2741 -9.1438 1.7564 23 6 1.9271 -8.7207 0.4869 24 6 2.2757 -7.4509 0.0683 25 6 2.9694 -6.6069 0.9155 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.9075 -5.2272 -1.1378 30 1 1.9058 -4.0555 -2.0278 31 1 4.5555 -3.0228 -0.9046 32 1 2.9255 -2.6306 -3.5551 33 1 4.4391 -1.6977 -3.0644 34 1 5.7488 -3.8689 -2.9768 35 1 4.2353 -4.8018 -3.4675 36 1 5.0810 -5.8299 2.7275 37 1 3.5060 -5.1843 3.3723 38 1 3.2334 -8.6380 3.5940 39 1 2.0033 -10.1359 2.0862 40 1 1.3863 -9.3804 -0.1753 41 1 2.0058 -7.1170 -0.9227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353773052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = 51.547678 kcal Electronic energy + Delta-G solvation = -22549.491626 eV Core-core repulsion = 19396.338470 eV Total energy + Delta-G solvation = -3153.153155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94355 -38.66206 -37.11615 -35.23525 -34.43848 -32.71409 -30.82160 -28.06104 -27.35925 -26.19240 -24.70553 -22.85201 -22.07846 -21.76937 -20.81053 -20.21596 -18.43948 -17.06082 -16.99365 -16.47648 -15.75026 -15.14542 -14.92699 -14.60656 -14.29579 -13.82372 -13.62399 -13.43017 -13.05620 -12.80488 -12.55328 -12.33652 -12.21108 -11.88870 -11.69491 -11.47872 -11.25419 -11.23062 -10.93172 -10.88922 -10.60471 -10.44348 -10.13459 -10.05787 -9.60929 -9.30917 -9.08696 -8.80428 -8.44483 -8.34946 -7.65674 -6.34141 -4.04958 1.29262 1.36208 3.18586 3.43618 3.47799 3.64281 3.67651 3.83219 4.14647 4.25180 4.42085 4.55814 4.64937 4.89551 4.97847 5.06751 5.09949 5.18869 5.35317 5.39121 5.44198 5.54772 5.58224 5.69445 5.70773 5.80681 5.83255 5.89960 5.99093 6.04108 6.20175 6.23378 6.34371 6.38034 6.45082 6.55497 6.74045 6.82161 6.96049 7.13467 7.39994 8.07479 8.26206 8.47259 8.80812 8.97205 9.63666 11.03075 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.005109 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.546694 B = 5479.648672 C = 6171.003994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.052 0.948 9 C 0.237 3.763 10 N -0.585 5.585 11 C 0.144 3.856 12 C -0.155 4.155 13 C -0.162 4.162 14 C -0.189 4.189 15 C 0.523 3.477 16 O -0.535 6.535 17 C -0.066 4.066 18 H 0.113 0.887 19 C -0.062 4.062 20 C -0.116 4.116 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.086 4.086 25 C -0.117 4.117 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.020 0.980 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -16.497 -2.687 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.185 4.185 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.633 4.633 8 H 0.071 0.929 9 C 0.118 3.882 10 N -0.315 5.315 11 C 0.020 3.980 12 C -0.175 4.175 13 C -0.199 4.199 14 C -0.227 4.227 15 C 0.309 3.691 16 O -0.412 6.412 17 C -0.087 4.087 18 H 0.131 0.869 19 C -0.099 4.099 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.104 4.104 25 C -0.117 4.117 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.124 -14.587 -2.138 16.833 hybrid contribution 0.250 -1.641 -0.238 1.677 sum 8.374 -16.227 -2.376 18.415 Atomic orbital electron populations 1.70802 1.06820 1.30350 1.46888 1.25741 0.96436 1.02472 0.93846 0.83545 0.74915 0.75395 0.76444 1.20759 1.21490 1.21508 1.22179 0.94577 0.91403 1.55173 0.92949 1.19360 0.88021 0.83940 0.96913 1.47934 1.44884 1.34668 1.04029 1.21073 0.94398 0.95848 0.86726 1.22719 0.99338 1.03399 0.92022 1.22886 1.01716 0.94720 1.00552 1.22983 0.98726 0.98468 1.02520 1.19809 0.82001 0.83105 0.84226 1.90660 1.57922 1.61609 1.31012 1.21405 0.98053 0.90702 0.98581 0.86894 1.21759 1.00573 0.90571 0.96994 1.22409 0.98401 0.94575 0.96193 1.20525 0.99148 0.92604 0.99744 1.20938 0.99057 0.99473 0.94185 1.20968 1.00765 0.95645 0.96534 1.20251 0.97816 0.93014 0.99296 1.21332 0.98944 0.95429 0.96030 0.92329 0.95002 0.96261 0.90992 0.90770 0.87833 0.88878 0.89059 0.89257 0.89203 0.88527 0.86909 0.86487 0.85892 0.85623 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.90 13.65 55.43 0.76 -27.14 16 2 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 3 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.59 -16.76 9.39 -34.44 -0.32 -17.08 16 8 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.24 6.17 4.51 -5.19 -0.02 6.15 16 10 N -0.59 -12.46 2.46 -175.06 -0.43 -12.89 16 11 C 0.14 2.39 5.44 -4.04 -0.02 2.37 16 12 C -0.16 -2.47 5.76 -90.62 -0.52 -2.99 16 13 C -0.16 -2.46 10.18 -26.69 -0.27 -2.73 16 14 C -0.19 -2.36 10.25 -26.69 -0.27 -2.63 16 15 C 0.52 11.07 7.17 -10.98 -0.08 10.99 16 16 O -0.53 -13.62 15.24 5.55 0.08 -13.54 16 17 C -0.07 -1.05 2.89 -96.60 -0.28 -1.33 16 18 H 0.11 1.58 7.67 -51.93 -0.40 1.19 16 19 C -0.06 -0.89 7.91 -27.58 -0.22 -1.11 16 20 C -0.12 -1.65 7.32 -107.59 -0.79 -2.44 16 21 C -0.10 -1.26 10.05 -39.41 -0.40 -1.65 16 22 C -0.12 -1.31 10.03 -39.67 -0.40 -1.71 16 23 C -0.12 -1.37 10.06 -39.60 -0.40 -1.77 16 24 C -0.09 -1.12 9.63 -39.60 -0.38 -1.50 16 25 C -0.12 -1.73 6.15 -104.55 -0.64 -2.38 16 26 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 27 H 0.03 0.93 7.29 -51.93 -0.38 0.56 16 28 H 0.02 0.51 7.76 -51.93 -0.40 0.10 16 29 H 0.07 1.02 4.81 -51.93 -0.25 0.77 16 30 H 0.07 1.22 7.63 -51.93 -0.40 0.82 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.11 1.82 7.02 -51.93 -0.36 1.46 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.38 7.29 -52.49 -0.38 1.00 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -33.54 342.18 -10.50 -44.04 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.87 Total: 3.11 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -5.11 Total: -19.35 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.33 Total: -40.03 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.54 -10.50 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353773052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.591 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds