Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00235 * 269.99530 * 10 9 7 12 12 C 1.53008 * 109.46926 * 90.00466 * 11 10 9 13 13 C 1.52999 * 117.49669 * 243.74916 * 12 11 10 14 14 C 1.52996 * 117.49911 * 175.08701 * 12 11 10 15 15 C 1.34783 * 120.00107 * 90.00402 * 10 9 7 16 16 O 1.21284 * 119.99626 * 359.97438 * 15 10 9 17 17 C 1.50696 * 120.00310 * 179.97438 * 15 10 9 18 18 H 1.09003 * 112.50756 * 50.31993 * 17 15 10 19 19 C 1.52885 * 113.16644 * 180.22581 * 17 15 10 20 20 C 1.51427 * 84.73080 * 115.22374 * 19 17 15 21 21 C 1.38952 * 145.52840 * 179.97438 * 20 19 17 22 22 C 1.37984 * 120.32247 * 180.02562 * 21 20 19 23 23 C 1.38240 * 120.17936 * 359.97438 * 22 21 20 24 24 C 1.38174 * 119.74416 * 0.02562 * 23 22 21 25 25 C 1.38244 * 120.13114 * 0.02562 * 24 23 22 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.08998 * 109.47569 * 210.00215 * 11 10 9 30 30 H 1.08997 * 109.47185 * 330.00886 * 11 10 9 31 31 H 1.09001 * 115.54622 * 29.41886 * 12 11 10 32 32 H 1.08999 * 117.50097 * 359.97438 * 13 12 11 33 33 H 1.09005 * 117.49726 * 145.02031 * 13 12 11 34 34 H 1.08996 * 117.49894 * 214.97771 * 14 12 11 35 35 H 1.08997 * 117.50079 * 0.02562 * 14 12 11 36 36 H 1.08996 * 113.98574 * 229.16476 * 19 17 15 37 37 H 1.08996 * 113.98632 * 1.27785 * 19 17 15 38 38 H 1.07990 * 119.83954 * 0.02792 * 21 20 19 39 39 H 1.07998 * 119.90711 * 179.97438 * 22 21 20 40 40 H 1.07990 * 120.12522 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.93370 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2681 12 6 3.9413 -3.4258 -1.7098 13 6 3.8708 -2.6265 -3.0125 14 6 4.6611 -3.9364 -2.9596 15 6 2.6410 -4.1249 1.1678 16 8 2.2472 -3.6637 2.2181 17 6 3.6199 -5.2706 1.1678 18 1 4.4801 -5.0845 0.5248 19 6 4.0065 -5.7313 2.5734 20 6 3.3187 -7.0240 2.1876 21 6 2.9655 -8.3020 2.6033 22 6 2.2741 -9.1438 1.7564 23 6 1.9271 -8.7207 0.4869 24 6 2.2757 -7.4509 0.0683 25 6 2.9694 -6.6069 0.9155 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.9075 -5.2272 -1.1378 30 1 1.9058 -4.0555 -2.0278 31 1 4.5555 -3.0228 -0.9046 32 1 2.9255 -2.6306 -3.5551 33 1 4.4391 -1.6977 -3.0644 34 1 5.7488 -3.8689 -2.9768 35 1 4.2353 -4.8018 -3.4675 36 1 5.0810 -5.8299 2.7275 37 1 3.5060 -5.1843 3.3723 38 1 3.2334 -8.6380 3.5940 39 1 2.0033 -10.1359 2.0862 40 1 1.3863 -9.3804 -0.1753 41 1 2.0058 -7.1170 -0.9227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353773052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = 33.439888 kcal Electronic energy + Delta-G solvation = -22550.276838 eV Core-core repulsion = 19396.338470 eV Total energy + Delta-G solvation = -3153.938368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.16743 -40.09867 -38.45664 -36.52054 -36.03862 -34.77770 -31.79557 -29.80342 -28.58525 -27.63035 -26.29734 -24.62165 -23.19466 -22.95113 -22.07303 -21.35124 -19.91644 -19.11214 -18.41339 -17.61648 -17.31068 -16.35699 -16.20694 -15.94910 -15.66110 -15.44655 -15.23695 -14.79951 -14.45496 -13.96609 -13.93071 -13.70453 -13.56770 -13.42856 -13.11481 -12.94213 -12.88552 -12.67452 -12.49619 -12.31581 -11.98435 -11.92946 -11.51025 -11.37243 -11.10863 -10.91536 -10.75604 -10.58852 -9.78472 -9.55709 -9.51054 -8.66561 -6.40173 0.31737 0.41444 1.47130 1.56479 1.59587 1.75533 2.15801 2.53524 2.79484 2.95687 3.11061 3.12231 3.39766 3.46981 3.58251 3.87708 3.99436 4.15050 4.16278 4.19317 4.24392 4.37681 4.49580 4.60656 4.63982 4.69199 4.77497 4.79888 4.83135 4.89404 4.91861 5.00145 5.07379 5.13556 5.26159 5.30488 5.44500 5.54473 5.55999 5.73733 5.83906 6.04358 6.16904 6.47015 6.59279 7.22993 7.39747 8.68550 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.005109 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.546694 B = 5479.648672 C = 6171.003994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.032 4.032 3 Si 1.115 2.885 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.596 4.596 8 H 0.047 0.953 9 C 0.249 3.751 10 N -0.589 5.589 11 C 0.144 3.856 12 C -0.179 4.179 13 C -0.182 4.182 14 C -0.143 4.143 15 C 0.514 3.486 16 O -0.592 6.592 17 C -0.058 4.058 18 H 0.133 0.867 19 C -0.061 4.061 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.097 4.097 25 C -0.141 4.141 26 H 0.253 0.747 27 H -0.011 1.011 28 H 0.015 0.985 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.456 -18.898 -4.058 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.230 4.230 3 Si 0.936 3.064 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.635 4.635 8 H 0.066 0.934 9 C 0.128 3.872 10 N -0.318 5.318 11 C 0.022 3.978 12 C -0.198 4.198 13 C -0.219 4.219 14 C -0.180 4.180 15 C 0.302 3.698 16 O -0.473 6.473 17 C -0.079 4.079 18 H 0.151 0.849 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.142 4.142 26 H 0.062 0.938 27 H 0.007 0.993 28 H 0.033 0.967 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.024 -17.037 -3.550 20.083 hybrid contribution -0.385 -1.008 0.198 1.097 sum 9.638 -18.045 -3.353 20.730 Atomic orbital electron populations 1.70927 1.07804 1.29563 1.48988 1.27249 0.96504 1.06352 0.92897 0.82971 0.74214 0.71437 0.77789 1.20615 1.20646 1.18676 1.22392 0.94358 0.92434 1.54293 0.93445 1.18878 0.88475 0.85406 0.94463 1.47955 1.44124 1.33466 1.06253 1.21310 0.94753 0.97323 0.84446 1.22575 0.99510 1.05205 0.92503 1.22941 1.02444 0.96228 1.00325 1.23083 0.99533 0.97215 0.98177 1.20827 0.82040 0.83787 0.83104 1.90618 1.60088 1.63635 1.32922 1.21338 0.97137 0.88992 1.00397 0.84940 1.21740 1.02292 0.90618 0.95117 1.22452 0.99277 0.95372 0.96166 1.20869 0.98974 0.91959 1.01029 1.21394 0.97441 1.00571 0.93723 1.21393 0.99983 0.95192 0.97171 1.20550 0.97560 0.93661 0.99749 1.21299 1.00916 0.94694 0.97265 0.93778 0.99349 0.96747 0.88043 0.90830 0.89845 0.89371 0.89691 0.87240 0.86754 0.85457 0.89652 0.84526 0.82582 0.82550 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.17 13.65 21.45 0.29 -58.88 16 2 C -0.03 -1.92 5.46 84.65 0.46 -1.46 16 3 Si 1.11 52.13 29.90 68.60 2.05 54.18 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.60 -34.84 9.39 25.60 0.24 -34.60 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 9 C 0.25 13.72 4.51 85.64 0.39 14.11 16 10 N -0.59 -26.01 2.46 -826.14 -2.03 -28.03 16 11 C 0.14 4.74 5.44 86.38 0.47 5.21 16 12 C -0.18 -5.50 5.76 -10.79 -0.06 -5.56 16 13 C -0.18 -5.35 10.18 30.62 0.31 -5.03 16 14 C -0.14 -3.09 10.25 30.62 0.31 -2.77 16 15 C 0.51 22.67 7.17 87.65 0.63 23.30 16 16 O -0.59 -32.12 15.24 -3.04 -0.05 -32.17 16 17 C -0.06 -1.83 2.89 -14.66 -0.04 -1.87 16 18 H 0.13 3.57 7.67 -2.39 -0.02 3.55 16 19 C -0.06 -1.74 7.91 30.04 0.24 -1.50 16 20 C -0.13 -3.63 7.32 -21.79 -0.16 -3.78 16 21 C -0.11 -2.45 10.05 22.38 0.22 -2.22 16 22 C -0.11 -2.09 10.03 22.21 0.22 -1.87 16 23 C -0.12 -2.29 10.06 22.25 0.22 -2.06 16 24 C -0.10 -2.32 9.63 22.26 0.21 -2.10 16 25 C -0.14 -4.02 6.15 -19.82 -0.12 -4.14 16 26 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 27 H -0.01 -0.73 7.29 -2.39 -0.02 -0.74 16 28 H 0.01 0.81 7.76 -2.38 -0.02 0.79 16 29 H 0.10 2.71 4.81 -2.39 -0.01 2.70 16 30 H 0.07 2.40 7.63 -2.39 -0.02 2.38 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 33 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.09 2.91 7.02 -2.39 -0.02 2.90 16 38 H 0.14 2.39 8.06 -2.92 -0.02 2.37 16 39 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.16 1.98 8.06 -2.92 -0.02 1.95 16 41 H 0.13 2.69 7.29 -2.91 -0.02 2.67 16 Total: -1.00 -77.51 342.18 4.94 -72.57 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 1.12 Total: 18.70 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.55 Total: -26.37 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.74 Total: -86.92 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -77.51 4.94 -72.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353773052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.012 kcal (2) G-P(sol) polarization free energy of solvation -77.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds