Wall clock time and date at job start Tue Mar 31 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48497 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47449 * 300.00134 * 3 2 1 6 6 H 1.48507 * 109.46795 * 59.99899 * 3 2 1 7 7 C 1.37873 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00140 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47242 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00141 * 269.99417 * 10 9 7 12 12 C 1.52994 * 109.47335 * 270.00244 * 11 10 9 13 13 C 1.53002 * 117.50063 * 243.61988 * 12 11 10 14 14 C 1.52997 * 59.99994 * 252.50930 * 13 12 11 15 15 C 1.34779 * 119.99959 * 89.99961 * 10 9 7 16 16 O 1.21281 * 120.00085 * 0.02562 * 15 10 9 17 17 C 1.50702 * 119.99752 * 179.97438 * 15 10 9 18 18 H 1.08998 * 112.55153 * 309.63448 * 17 15 10 19 19 C 1.52884 * 113.16333 * 179.77443 * 17 15 10 20 20 C 1.51427 * 84.72808 * 244.77513 * 19 17 15 21 21 C 1.38955 * 145.52629 * 179.97438 * 20 19 17 22 22 C 1.37984 * 120.32102 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.17869 * 359.97329 * 22 21 20 24 24 C 1.38179 * 119.74675 * 0.02562 * 23 22 21 25 25 C 1.38237 * 120.12504 * 0.02562 * 24 23 22 26 26 H 0.97001 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47329 * 59.99015 * 9 7 2 28 28 H 1.09009 * 109.46757 * 299.99828 * 9 7 2 29 29 H 1.08999 * 109.46409 * 30.00428 * 11 10 9 30 30 H 1.09000 * 109.46717 * 149.99916 * 11 10 9 31 31 H 1.08998 * 115.55079 * 29.32941 * 12 11 10 32 32 H 1.08999 * 117.49735 * 0.02562 * 13 12 11 33 33 H 1.08996 * 117.49835 * 145.02168 * 13 12 11 34 34 H 1.09005 * 117.50424 * 252.50708 * 14 13 12 35 35 H 1.09011 * 117.51867 * 107.47635 * 14 13 12 36 36 H 1.08999 * 113.98958 * 358.71660 * 19 17 15 37 37 H 1.08999 * 113.99192 * 130.83592 * 19 17 15 38 38 H 1.07995 * 119.84449 * 0.02562 * 21 20 19 39 39 H 1.08001 * 119.91188 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.13037 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.93707 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3006 -1.7098 13 6 2.3402 -6.7088 -1.7981 14 6 2.0086 -5.9367 -3.0767 15 6 2.6410 -4.1248 1.1678 16 8 2.2465 -3.6642 2.2181 17 6 3.6198 -5.2706 1.1677 18 1 3.3018 -6.0921 0.5258 19 6 4.0149 -5.7241 2.5733 20 6 5.3991 -5.2467 2.1869 21 6 6.7165 -5.0966 2.6024 22 6 7.6556 -4.5448 1.7552 23 6 7.2917 -4.1375 0.4853 24 6 5.9830 -4.2843 0.0669 25 6 5.0411 -4.8360 0.9151 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.6867 -3.3878 -2.0278 30 1 3.6884 -4.5594 -1.1378 31 1 0.7114 -5.2097 -1.3863 32 1 3.3926 -6.8293 -1.5412 33 1 1.6928 -7.5444 -1.5326 34 1 1.1429 -6.2645 -3.6525 35 1 2.8427 -5.5489 -3.6616 36 1 3.5531 -5.1441 3.3722 37 1 3.9447 -6.8008 2.7277 38 1 7.0070 -5.4134 3.5931 39 1 8.6776 -4.4309 2.0851 40 1 8.0272 -3.7053 -0.1770 41 1 5.6952 -3.9667 -0.9244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353773053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:57 Heat of formation + Delta-G solvation = 53.516730 kcal Electronic energy + Delta-G solvation = -22606.706891 eV Core-core repulsion = 19453.639120 eV Total energy + Delta-G solvation = -3153.067771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85121 -38.57392 -37.18697 -35.15557 -34.32496 -32.50630 -30.71313 -28.20152 -27.37742 -26.26956 -24.85905 -22.76977 -22.31267 -21.62863 -20.82278 -20.12697 -18.24301 -17.05558 -16.62938 -16.33516 -15.58257 -15.03071 -14.96595 -14.67071 -14.36877 -14.19017 -13.61786 -13.31017 -12.95201 -12.80995 -12.40005 -12.21105 -12.11803 -11.80605 -11.62481 -11.45042 -11.41621 -11.19651 -10.87513 -10.80325 -10.62490 -10.37442 -10.27870 -10.08345 -9.82816 -9.58771 -9.17243 -8.68506 -8.42310 -8.32677 -7.67115 -6.03120 -4.07256 1.40709 1.48152 3.29562 3.30475 3.38299 3.43049 3.76291 3.87569 4.02553 4.33459 4.46041 4.53109 4.73378 4.88148 5.00546 5.03637 5.09329 5.17687 5.30840 5.34608 5.46479 5.51449 5.66959 5.68233 5.71586 5.78982 5.89039 5.97673 5.99173 6.09498 6.14129 6.17692 6.28046 6.45657 6.46551 6.57145 6.84987 7.05214 7.09735 7.44949 7.55670 7.93751 8.25034 8.41638 8.91273 9.08775 9.57809 11.05065 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.006440 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.483392 B = 4347.021781 C = 5499.486270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.589 5.589 11 C 0.139 3.861 12 C -0.165 4.165 13 C -0.187 4.187 14 C -0.175 4.175 15 C 0.523 3.477 16 O -0.536 6.536 17 C -0.068 4.068 18 H 0.113 0.887 19 C -0.063 4.063 20 C -0.118 4.118 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.083 4.083 25 C -0.115 4.115 26 H 0.262 0.738 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.846 -14.318 -2.577 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.126 3.874 10 N -0.319 5.319 11 C 0.015 3.985 12 C -0.185 4.185 13 C -0.224 4.224 14 C -0.213 4.213 15 C 0.309 3.691 16 O -0.413 6.413 17 C -0.089 4.089 18 H 0.131 0.869 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.101 4.101 25 C -0.115 4.115 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.467 -13.906 -2.026 17.523 hybrid contribution 0.483 1.034 -0.228 1.164 sum 10.950 -12.872 -2.254 17.049 Atomic orbital electron populations 1.69942 1.05953 1.26842 1.50672 1.24919 0.94859 0.99152 0.95126 0.86474 0.80079 0.83505 0.77588 1.19802 1.20953 1.20876 1.21468 0.93382 0.90642 1.50739 0.92449 1.19310 0.87472 0.82149 0.98444 1.48110 1.45378 1.34550 1.03846 1.21082 0.95370 0.94671 0.87408 1.22946 1.01463 0.93869 1.00199 1.23060 1.01461 0.95287 1.02573 1.22889 1.03348 1.04332 0.90707 1.19798 0.81573 0.83392 0.84339 1.90654 1.58254 1.61382 1.31022 1.21443 0.90974 0.98100 0.98420 0.86903 1.21751 0.89625 1.01465 0.97100 1.22382 0.94416 0.98721 0.96241 1.20498 0.91647 1.00288 0.99634 1.20921 0.99072 0.99525 0.94194 1.20966 0.95602 1.00728 0.96538 1.20261 0.91936 0.98467 0.99463 1.21292 0.94857 0.99364 0.96016 0.92809 0.94873 0.93847 0.89548 0.91157 0.87312 0.88905 0.89088 0.88951 0.88782 0.86959 0.88712 0.86597 0.85979 0.85672 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 10 N -0.59 -12.56 2.46 -175.06 -0.43 -12.99 16 11 C 0.14 2.31 5.40 -4.04 -0.02 2.28 16 12 C -0.17 -2.32 5.88 -90.62 -0.53 -2.85 16 13 C -0.19 -2.08 9.06 -26.73 -0.24 -2.33 16 14 C -0.18 -1.97 10.25 -26.73 -0.27 -2.25 16 15 C 0.52 11.14 7.17 -10.98 -0.08 11.06 16 16 O -0.54 -13.69 15.24 5.56 0.08 -13.60 16 17 C -0.07 -1.09 2.89 -96.60 -0.28 -1.37 16 18 H 0.11 1.54 6.12 -51.93 -0.32 1.22 16 19 C -0.06 -0.91 7.91 -27.59 -0.22 -1.12 16 20 C -0.12 -1.77 7.32 -107.60 -0.79 -2.55 16 21 C -0.10 -1.36 10.05 -39.41 -0.40 -1.75 16 22 C -0.12 -1.45 10.03 -39.67 -0.40 -1.85 16 23 C -0.12 -1.53 10.06 -39.60 -0.40 -1.93 16 24 C -0.08 -1.21 9.62 -39.60 -0.38 -1.59 16 25 C -0.11 -1.81 6.15 -104.55 -0.64 -2.46 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 29 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 30 H 0.07 1.04 4.54 -51.93 -0.24 0.80 16 31 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.09 0.97 7.60 -51.93 -0.39 0.58 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 36 H 0.11 1.84 7.02 -51.93 -0.36 1.47 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.60 7.29 -52.49 -0.38 1.21 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -33.24 340.76 -10.44 -43.67 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.85 Total: 2.60 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -5.10 Total: -15.96 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.02 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.24 -10.44 -43.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353773053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.191 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds