Wall clock time and date at job start Tue Mar 31 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48497 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47449 * 300.00134 * 3 2 1 6 6 H 1.48507 * 109.46795 * 59.99899 * 3 2 1 7 7 C 1.37873 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00140 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47242 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00141 * 269.99417 * 10 9 7 12 12 C 1.52994 * 109.47335 * 270.00244 * 11 10 9 13 13 C 1.53002 * 117.50063 * 243.61988 * 12 11 10 14 14 C 1.52997 * 59.99994 * 252.50930 * 13 12 11 15 15 C 1.34779 * 119.99959 * 89.99961 * 10 9 7 16 16 O 1.21281 * 120.00085 * 0.02562 * 15 10 9 17 17 C 1.50702 * 119.99752 * 179.97438 * 15 10 9 18 18 H 1.08998 * 112.55153 * 309.63448 * 17 15 10 19 19 C 1.52884 * 113.16333 * 179.77443 * 17 15 10 20 20 C 1.51427 * 84.72808 * 244.77513 * 19 17 15 21 21 C 1.38955 * 145.52629 * 179.97438 * 20 19 17 22 22 C 1.37984 * 120.32102 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.17869 * 359.97329 * 22 21 20 24 24 C 1.38179 * 119.74675 * 0.02562 * 23 22 21 25 25 C 1.38237 * 120.12504 * 0.02562 * 24 23 22 26 26 H 0.97001 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47329 * 59.99015 * 9 7 2 28 28 H 1.09009 * 109.46757 * 299.99828 * 9 7 2 29 29 H 1.08999 * 109.46409 * 30.00428 * 11 10 9 30 30 H 1.09000 * 109.46717 * 149.99916 * 11 10 9 31 31 H 1.08998 * 115.55079 * 29.32941 * 12 11 10 32 32 H 1.08999 * 117.49735 * 0.02562 * 13 12 11 33 33 H 1.08996 * 117.49835 * 145.02168 * 13 12 11 34 34 H 1.09005 * 117.50424 * 252.50708 * 14 13 12 35 35 H 1.09011 * 117.51867 * 107.47635 * 14 13 12 36 36 H 1.08999 * 113.98958 * 358.71660 * 19 17 15 37 37 H 1.08999 * 113.99192 * 130.83592 * 19 17 15 38 38 H 1.07995 * 119.84449 * 0.02562 * 21 20 19 39 39 H 1.08001 * 119.91188 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.13037 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.93707 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3006 -1.7098 13 6 2.3402 -6.7088 -1.7981 14 6 2.0086 -5.9367 -3.0767 15 6 2.6410 -4.1248 1.1678 16 8 2.2465 -3.6642 2.2181 17 6 3.6198 -5.2706 1.1677 18 1 3.3018 -6.0921 0.5258 19 6 4.0149 -5.7241 2.5733 20 6 5.3991 -5.2467 2.1869 21 6 6.7165 -5.0966 2.6024 22 6 7.6556 -4.5448 1.7552 23 6 7.2917 -4.1375 0.4853 24 6 5.9830 -4.2843 0.0669 25 6 5.0411 -4.8360 0.9151 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.6867 -3.3878 -2.0278 30 1 3.6884 -4.5594 -1.1378 31 1 0.7114 -5.2097 -1.3863 32 1 3.3926 -6.8293 -1.5412 33 1 1.6928 -7.5444 -1.5326 34 1 1.1429 -6.2645 -3.6525 35 1 2.8427 -5.5489 -3.6616 36 1 3.5531 -5.1441 3.3722 37 1 3.9447 -6.8008 2.7277 38 1 7.0070 -5.4134 3.5931 39 1 8.6776 -4.4309 2.0851 40 1 8.0272 -3.7053 -0.1770 41 1 5.6952 -3.9667 -0.9244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353773053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:56 Heat of formation + Delta-G solvation = 35.583933 kcal Electronic energy + Delta-G solvation = -22607.484515 eV Core-core repulsion = 19453.639120 eV Total energy + Delta-G solvation = -3153.845395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.11238 -40.00677 -38.42506 -36.44690 -35.92782 -34.60913 -31.76920 -30.07698 -28.60103 -27.67882 -26.43555 -24.48164 -23.22071 -22.87574 -22.01383 -21.27808 -19.75320 -18.64480 -18.45135 -17.65974 -17.24255 -16.42464 -16.22492 -16.00776 -15.90960 -15.40507 -14.93075 -14.77905 -14.37345 -14.00155 -13.91284 -13.67670 -13.44765 -13.36159 -12.99883 -12.89518 -12.84509 -12.59213 -12.54955 -12.29151 -12.25832 -11.89719 -11.73564 -11.46576 -11.25694 -10.97987 -10.68075 -10.65479 -9.74807 -9.49329 -9.48708 -8.25462 -6.40055 0.35121 0.44413 1.32483 1.35124 1.46940 1.70429 2.21979 2.39452 2.82367 2.93965 3.03870 3.15609 3.46056 3.53195 3.67293 3.89635 4.00791 4.13493 4.17518 4.22377 4.28811 4.34313 4.63286 4.69355 4.70305 4.79396 4.82508 4.83522 4.94635 4.95396 5.05781 5.07202 5.17219 5.18797 5.29874 5.31889 5.47102 5.53339 5.57353 5.77216 5.80995 6.03156 6.07510 6.65473 6.73651 7.23902 7.41095 8.82031 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.006440 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.483392 B = 4347.021781 C = 5499.486270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.262 3.738 10 N -0.592 5.592 11 C 0.141 3.859 12 C -0.195 4.195 13 C -0.166 4.166 14 C -0.159 4.159 15 C 0.513 3.487 16 O -0.592 6.592 17 C -0.058 4.058 18 H 0.138 0.862 19 C -0.059 4.059 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.099 4.099 25 C -0.142 4.142 26 H 0.268 0.732 27 H 0.023 0.977 28 H -0.002 1.002 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.838 -15.373 -3.581 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.067 0.933 9 C 0.141 3.859 10 N -0.321 5.321 11 C 0.019 3.981 12 C -0.215 4.215 13 C -0.203 4.203 14 C -0.196 4.196 15 C 0.302 3.698 16 O -0.473 6.473 17 C -0.079 4.079 18 H 0.156 0.844 19 C -0.096 4.096 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.476 -14.997 -3.073 20.395 hybrid contribution -0.431 1.352 0.082 1.421 sum 13.044 -13.645 -2.991 19.113 Atomic orbital electron populations 1.70054 1.07486 1.28113 1.51017 1.25833 0.95805 1.02941 0.94395 0.85401 0.78708 0.78772 0.78156 1.19337 1.19069 1.20633 1.21680 0.93040 0.91996 1.51223 0.93297 1.18737 0.87885 0.83651 0.95611 1.48095 1.44442 1.33507 1.06092 1.21243 0.97053 0.95071 0.84745 1.22661 0.99852 0.95191 1.03772 1.23174 1.02218 0.93352 1.01534 1.23017 1.04084 1.02589 0.89903 1.20797 0.81586 0.84216 0.83207 1.90611 1.60317 1.63524 1.32879 1.21388 0.89846 0.96280 1.00371 0.84435 1.21757 0.89382 1.03262 0.95163 1.22512 0.95282 0.99469 0.96088 1.20863 0.91038 0.99948 1.00939 1.21374 1.00437 0.97810 0.93640 1.21366 0.95314 0.99983 0.97315 1.20530 0.92734 0.98680 0.99795 1.21341 0.94368 1.01325 0.97237 0.92337 0.95901 0.98422 0.90952 0.88900 0.89747 0.87508 0.87732 0.87814 0.87492 0.89584 0.85059 0.84385 0.82648 0.82911 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.26 14.74 5.16 85.64 0.44 15.18 16 10 N -0.59 -26.61 2.46 -826.15 -2.03 -28.64 16 11 C 0.14 4.78 5.40 86.38 0.47 5.24 16 12 C -0.20 -5.46 5.88 -10.80 -0.06 -5.52 16 13 C -0.17 -3.29 9.06 30.59 0.28 -3.01 16 14 C -0.16 -3.23 10.25 30.59 0.31 -2.92 16 15 C 0.51 22.90 7.17 87.66 0.63 23.53 16 16 O -0.59 -32.32 15.24 -3.03 -0.05 -32.37 16 17 C -0.06 -1.86 2.89 -14.67 -0.04 -1.90 16 18 H 0.14 3.56 6.12 -2.39 -0.01 3.55 16 19 C -0.06 -1.68 7.91 30.04 0.24 -1.44 16 20 C -0.13 -3.84 7.32 -21.80 -0.16 -4.00 16 21 C -0.11 -2.63 10.05 22.38 0.22 -2.40 16 22 C -0.11 -2.40 10.03 22.21 0.22 -2.18 16 23 C -0.12 -2.73 10.06 22.26 0.22 -2.51 16 24 C -0.10 -2.72 9.62 22.26 0.21 -2.50 16 25 C -0.14 -4.35 6.15 -19.82 -0.12 -4.47 16 26 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 28 H 0.00 -0.15 7.42 -2.38 -0.02 -0.17 16 29 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 30 H 0.09 2.68 4.54 -2.39 -0.01 2.67 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 1.86 7.60 -2.39 -0.02 1.84 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.09 2.93 7.02 -2.39 -0.02 2.92 16 37 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.12 3.14 7.29 -2.91 -0.02 3.11 16 Total: -1.00 -76.67 340.76 4.82 -71.85 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 1.02 Total: 17.92 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.57 Total: -19.97 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.74 Total: -85.56 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.37 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.67 4.82 -71.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353773053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.430 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds