Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99846 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46995 * 180.02562 * 14 13 11 16 16 H 1.09000 * 115.53977 * 330.58789 * 15 14 13 17 17 C 1.52968 * 117.47811 * 116.17120 * 15 14 13 18 18 H 1.08998 * 118.97223 * 355.95594 * 17 15 14 19 19 C 1.50937 * 118.98204 * 201.35733 * 17 15 14 20 20 C 1.38795 * 129.73089 * 115.00509 * 19 17 15 21 21 C 1.38009 * 120.31899 * 179.97438 * 20 19 17 22 22 C 1.38255 * 119.88883 * 0.02562 * 21 20 19 23 23 C 1.38023 * 119.87439 * 0.02562 * 22 21 20 24 24 C 1.37811 * 110.47983 * 295.00606 * 19 17 15 25 25 C 1.50969 * 110.46531 * 0.05763 * 24 19 17 26 26 C 1.53042 * 117.47875 * 184.99299 * 15 14 13 27 27 H 1.08998 * 119.41572 * 4.10265 * 26 15 14 28 28 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 30 30 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 31 31 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 32 32 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 33 33 H 0.96998 * 119.99962 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47464 * 299.99786 * 14 13 11 35 35 H 1.09001 * 109.47001 * 60.00345 * 14 13 11 36 36 H 1.08005 * 119.83841 * 0.02562 * 20 19 17 37 37 H 1.07999 * 120.05845 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.06284 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.84269 * 180.02562 * 23 22 21 40 40 H 1.09007 * 109.91716 * 119.65796 * 25 24 19 41 41 H 1.08998 * 109.92766 * 240.76757 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1343 -0.0018 14 6 1.4334 -7.4030 -0.0030 15 6 2.4277 -8.5660 -0.0029 16 1 3.3847 -8.3662 -0.4850 17 6 2.4306 -9.4920 1.2146 18 1 1.7816 -9.2571 2.0582 19 6 3.6593 -10.3208 1.5003 20 6 4.5356 -10.2668 2.5753 21 6 5.6111 -11.1291 2.6414 22 6 5.8179 -12.0512 1.6323 23 6 4.9482 -12.1057 0.5620 24 6 3.8655 -11.2399 0.4944 25 6 2.7952 -11.1144 -0.5629 26 6 1.8587 -9.9816 -0.1222 27 1 0.7873 -10.1172 -0.2701 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 2.8721 -3.6042 -0.8905 32 1 2.8721 -3.6043 0.8895 33 1 3.1359 -6.1343 -0.0015 34 1 0.8065 -7.4615 0.8867 35 1 0.8071 -7.4601 -0.8933 36 1 4.3745 -9.5470 3.3643 37 1 6.2901 -11.0836 3.4801 38 1 6.6584 -12.7276 1.6814 39 1 5.1100 -12.8265 -0.2259 40 1 3.2489 -10.8688 -1.5231 41 1 2.2404 -12.0492 -0.6427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360364370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -0.456854 kcal Electronic energy + Delta-G solvation = -20690.399834 eV Core-core repulsion = 17534.991593 eV Total energy + Delta-G solvation = -3155.408241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09369 -39.08744 -37.60632 -34.41347 -33.42117 -32.06424 -31.17371 -30.68138 -28.20201 -26.97148 -25.15480 -23.00536 -21.94732 -21.38686 -20.70470 -20.64630 -19.36852 -16.97771 -16.71715 -16.03186 -15.73177 -15.50348 -15.19357 -15.04474 -14.56513 -14.38801 -13.93654 -13.68701 -13.47879 -13.03081 -12.97473 -12.75244 -12.29643 -12.16527 -12.06332 -11.83789 -11.38414 -11.14153 -11.06716 -10.91727 -10.67033 -10.58661 -10.29208 -9.93324 -9.64485 -9.16033 -9.06878 -8.97860 -8.83626 -8.66386 -8.30190 -5.94349 -3.98667 1.00854 1.07125 3.07153 3.28787 3.34551 3.39261 3.41349 3.43906 3.72244 3.99928 4.24127 4.48980 4.54472 4.59905 4.75269 4.77347 4.79149 4.98718 5.01136 5.20245 5.26299 5.39072 5.40507 5.44183 5.53627 5.62724 5.67518 5.72165 5.77091 5.90944 6.01741 6.13500 6.21465 6.25807 6.27420 6.37171 6.68617 6.74249 6.92176 7.76383 7.88732 7.91215 8.09338 8.40810 8.80547 9.10077 9.64738 11.16644 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.002470 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.394848 B =11334.934483 C =11935.573284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.536 6.536 13 N -0.742 5.742 14 C 0.152 3.848 15 C -0.119 4.119 16 H 0.110 0.890 17 C -0.123 4.123 18 H 0.120 0.880 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.096 4.096 25 C -0.054 4.054 26 C -0.147 4.147 27 H 0.126 0.874 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.795 -27.012 1.713 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.397 5.397 14 C 0.028 3.972 15 C -0.138 4.138 16 H 0.128 0.872 17 C -0.141 4.141 18 H 0.138 0.862 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.096 4.096 25 C -0.091 4.091 26 C -0.166 4.166 27 H 0.144 0.856 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.721 -26.894 1.722 28.648 hybrid contribution 1.005 0.816 0.124 1.300 sum 10.726 -26.078 1.846 28.258 Atomic orbital electron populations 1.69996 1.06051 1.26564 1.50252 1.25029 0.94832 0.99233 0.95343 0.86589 0.79765 0.83517 0.78054 1.20678 1.21231 1.19900 1.21229 0.92931 0.91033 1.51302 0.92610 1.18900 0.93191 0.89383 0.98618 1.21864 1.00711 0.91915 1.02491 1.21563 0.88640 0.85609 0.74376 1.90670 1.14487 1.87669 1.48290 1.46178 1.10094 1.05356 1.78062 1.20711 0.92880 0.81208 1.02424 1.22542 1.00963 0.90392 0.99872 0.87212 1.21701 0.96928 1.02695 0.92742 0.86208 1.19736 0.95289 0.96439 0.94946 1.20753 0.94216 0.99186 0.97741 1.21048 0.97805 0.96012 0.99109 1.21034 0.99315 0.99093 0.94365 1.20642 0.94300 0.99067 0.98747 1.20514 0.96492 0.96401 0.96151 1.20281 0.93706 0.97891 0.97191 1.23019 0.99985 0.93102 1.00473 0.85613 0.92962 0.95820 0.95830 0.90244 0.90243 0.76830 0.91431 0.90943 0.86013 0.85803 0.85875 0.86213 0.89818 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 11 C 0.51 9.90 7.83 -10.99 -0.09 9.82 16 12 O -0.54 -12.78 15.98 5.56 0.09 -12.69 16 13 N -0.74 -10.48 5.56 -60.29 -0.33 -10.81 16 14 C 0.15 1.86 5.96 -4.04 -0.02 1.84 16 15 C -0.12 -1.14 5.43 -90.61 -0.49 -1.63 16 16 H 0.11 1.03 8.04 -51.93 -0.42 0.61 16 17 C -0.12 -1.16 6.49 -91.45 -0.59 -1.75 16 18 H 0.12 1.12 8.10 -51.93 -0.42 0.70 16 19 C -0.06 -0.63 5.94 -104.46 -0.62 -1.25 16 20 C -0.10 -0.93 10.04 -39.46 -0.40 -1.32 16 21 C -0.12 -0.98 10.04 -39.66 -0.40 -1.38 16 22 C -0.12 -0.92 10.05 -39.65 -0.40 -1.32 16 23 C -0.11 -0.88 10.04 -39.46 -0.40 -1.28 16 24 C -0.10 -0.86 6.11 -104.44 -0.64 -1.50 16 25 C -0.05 -0.41 6.57 -27.52 -0.18 -0.59 16 26 C -0.15 -1.23 6.82 -90.15 -0.62 -1.85 16 27 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 4.49 8.40 -40.82 -0.34 4.15 16 34 H 0.07 0.89 7.92 -51.93 -0.41 0.47 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -34.59 347.27 -11.03 -45.62 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.20 Total: 0.74 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -5.53 Total: -17.96 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.40 Total: -37.73 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.59 -11.03 -45.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360364370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.164 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds