Wall clock time and date at job start Tue Mar 31 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99846 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46995 * 180.02562 * 14 13 11 16 16 H 1.09000 * 115.53977 * 330.58789 * 15 14 13 17 17 C 1.52968 * 117.47811 * 116.17120 * 15 14 13 18 18 H 1.08998 * 118.97223 * 355.95594 * 17 15 14 19 19 C 1.50937 * 118.98204 * 201.35733 * 17 15 14 20 20 C 1.38795 * 129.73089 * 115.00509 * 19 17 15 21 21 C 1.38009 * 120.31899 * 179.97438 * 20 19 17 22 22 C 1.38255 * 119.88883 * 0.02562 * 21 20 19 23 23 C 1.38023 * 119.87439 * 0.02562 * 22 21 20 24 24 C 1.37811 * 110.47983 * 295.00606 * 19 17 15 25 25 C 1.50969 * 110.46531 * 0.05763 * 24 19 17 26 26 C 1.53042 * 117.47875 * 184.99299 * 15 14 13 27 27 H 1.08998 * 119.41572 * 4.10265 * 26 15 14 28 28 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 30 30 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 31 31 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 32 32 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 33 33 H 0.96998 * 119.99962 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47464 * 299.99786 * 14 13 11 35 35 H 1.09001 * 109.47001 * 60.00345 * 14 13 11 36 36 H 1.08005 * 119.83841 * 0.02562 * 20 19 17 37 37 H 1.07999 * 120.05845 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.06284 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.84269 * 180.02562 * 23 22 21 40 40 H 1.09007 * 109.91716 * 119.65796 * 25 24 19 41 41 H 1.08998 * 109.92766 * 240.76757 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1343 -0.0018 14 6 1.4334 -7.4030 -0.0030 15 6 2.4277 -8.5660 -0.0029 16 1 3.3847 -8.3662 -0.4850 17 6 2.4306 -9.4920 1.2146 18 1 1.7816 -9.2571 2.0582 19 6 3.6593 -10.3208 1.5003 20 6 4.5356 -10.2668 2.5753 21 6 5.6111 -11.1291 2.6414 22 6 5.8179 -12.0512 1.6323 23 6 4.9482 -12.1057 0.5620 24 6 3.8655 -11.2399 0.4944 25 6 2.7952 -11.1144 -0.5629 26 6 1.8587 -9.9816 -0.1222 27 1 0.7873 -10.1172 -0.2701 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 2.8721 -3.6042 -0.8905 32 1 2.8721 -3.6043 0.8895 33 1 3.1359 -6.1343 -0.0015 34 1 0.8065 -7.4615 0.8867 35 1 0.8071 -7.4601 -0.8933 36 1 4.3745 -9.5470 3.3643 37 1 6.2901 -11.0836 3.4801 38 1 6.6584 -12.7276 1.6814 39 1 5.1100 -12.8265 -0.2259 40 1 3.2489 -10.8688 -1.5231 41 1 2.2404 -12.0492 -0.6427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360364370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:04 Heat of formation + Delta-G solvation = -20.820871 kcal Electronic energy + Delta-G solvation = -20691.282884 eV Core-core repulsion = 17534.991593 eV Total energy + Delta-G solvation = -3156.291291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77293 -40.58737 -38.34301 -35.75484 -35.46953 -33.14136 -32.61806 -31.59093 -29.01572 -28.23628 -26.78844 -23.95137 -23.20475 -22.53261 -21.62515 -21.36039 -20.67692 -18.79925 -17.66897 -17.35200 -16.95990 -16.65325 -16.43353 -16.15367 -16.00345 -15.33238 -14.99554 -14.74751 -14.40958 -14.23987 -14.12735 -13.86756 -13.57210 -13.33739 -13.22841 -12.99618 -12.80728 -12.58706 -12.46395 -12.04766 -11.91277 -11.68568 -11.63061 -11.42473 -11.30523 -11.08982 -10.64381 -10.56644 -10.07555 -9.67090 -9.36628 -8.17632 -6.31715 0.38724 0.46163 1.42355 1.45247 1.56147 1.71472 2.13627 2.43137 2.53222 2.96249 3.15241 3.27093 3.53788 3.84667 3.94970 4.02307 4.12749 4.17078 4.20416 4.23179 4.35157 4.52091 4.55162 4.59649 4.67446 4.68177 4.73053 4.88328 4.90667 5.00956 5.09316 5.14497 5.16182 5.30027 5.46254 5.52943 5.54662 5.62063 5.63982 5.73645 5.86080 6.10569 6.18192 6.60545 6.86847 7.34190 7.38658 8.95108 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.002470 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.394848 B =11334.934483 C =11935.573284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.717 5.717 14 C 0.153 3.847 15 C -0.117 4.117 16 H 0.117 0.883 17 C -0.129 4.129 18 H 0.114 0.886 19 C -0.085 4.085 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.107 4.107 25 C -0.052 4.052 26 C -0.137 4.137 27 H 0.135 0.865 28 H 0.263 0.737 29 H -0.017 1.017 30 H -0.018 1.018 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.416 0.584 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.677 -28.121 1.380 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.470 6.470 13 N -0.370 5.370 14 C 0.030 3.970 15 C -0.135 4.135 16 H 0.135 0.865 17 C -0.147 4.147 18 H 0.132 0.868 19 C -0.085 4.085 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.107 4.107 25 C -0.088 4.088 26 C -0.155 4.155 27 H 0.153 0.847 28 H 0.071 0.929 29 H 0.001 0.999 30 H 0.000 1.000 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.111 0.889 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.672 -28.053 1.388 30.814 hybrid contribution 0.116 1.059 0.255 1.096 sum 12.788 -26.994 1.643 29.915 Atomic orbital electron populations 1.70176 1.08313 1.27812 1.51497 1.26153 0.95746 1.03992 0.94664 0.85310 0.78647 0.77674 0.78538 1.19661 1.21183 1.17923 1.21721 0.94004 0.91623 1.50740 0.90600 1.18695 0.93737 0.92489 0.94713 1.21638 0.99319 0.90097 1.04865 1.21322 0.87794 0.86733 0.74177 1.90656 1.16679 1.88424 1.51225 1.45885 1.10994 1.04601 1.75565 1.20758 0.93431 0.81073 1.01764 1.22306 1.00496 0.89941 1.00753 0.86524 1.21696 0.97300 1.02853 0.92893 0.86800 1.19877 0.95676 0.97198 0.95771 1.20953 0.94854 0.99902 0.97965 1.21334 0.97695 0.95749 0.99905 1.21385 0.99795 0.99048 0.93885 1.20954 0.93943 0.99170 0.99433 1.20759 0.97155 0.96463 0.96301 1.20322 0.93349 0.98034 0.97135 1.23148 1.00708 0.92348 0.99299 0.84744 0.92852 0.99896 0.99968 0.87677 0.87824 0.74713 0.92375 0.91465 0.85860 0.84066 0.83582 0.84267 0.88865 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 11 C 0.51 20.01 7.83 87.66 0.69 20.70 16 12 O -0.59 -29.34 15.98 -3.04 -0.05 -29.39 16 13 N -0.72 -19.53 5.56 -463.06 -2.57 -22.10 16 14 C 0.15 3.69 5.96 86.38 0.51 4.21 16 15 C -0.12 -2.07 5.43 -10.79 -0.06 -2.13 16 16 H 0.12 1.95 8.04 -2.39 -0.02 1.93 16 17 C -0.13 -2.34 6.49 -11.33 -0.07 -2.42 16 18 H 0.11 2.14 8.10 -2.39 -0.02 2.12 16 19 C -0.09 -1.58 5.94 -19.76 -0.12 -1.70 16 20 C -0.12 -2.08 10.04 22.35 0.22 -1.86 16 21 C -0.13 -1.87 10.04 22.22 0.22 -1.64 16 22 C -0.12 -1.60 10.05 22.22 0.22 -1.38 16 23 C -0.12 -1.62 10.04 22.35 0.22 -1.40 16 24 C -0.11 -1.73 6.11 -19.75 -0.12 -1.85 16 25 C -0.05 -0.67 6.57 30.08 0.20 -0.47 16 26 C -0.14 -2.07 6.82 -10.49 -0.07 -2.15 16 27 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 30 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 31 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 33 H 0.42 8.47 8.40 -92.71 -0.78 7.69 16 34 H 0.06 1.54 7.92 -2.39 -0.02 1.52 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.85 347.27 2.77 -75.07 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.24 Total: 14.87 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.84 Total: -25.31 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.29 Total: -81.89 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.85 2.77 -75.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360364370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.253 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds