Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46997 * 300.00218 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99821 * 3 2 1 7 7 C 1.37884 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47303 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 H 1.09002 * 115.53893 * 330.80297 * 15 14 13 17 17 C 1.53042 * 117.48160 * 185.21060 * 15 14 13 18 18 H 1.08997 * 119.40889 * 140.81878 * 17 15 14 19 19 C 1.54961 * 117.62874 * 343.45203 * 17 15 14 20 20 C 1.50973 * 107.18293 * 296.94911 * 19 17 15 21 21 C 1.38780 * 129.72051 * 179.97438 * 20 19 17 22 22 C 1.38020 * 120.30852 * 179.97438 * 21 20 19 23 23 C 1.38243 * 119.88200 * 0.04198 * 22 21 20 24 24 C 1.38020 * 119.88358 * 0.02562 * 23 22 21 25 25 C 1.37809 * 110.45834 * 359.96072 * 20 19 17 26 26 C 1.50936 * 110.48428 * 359.94773 * 25 20 19 27 27 H 1.09000 * 117.15880 * 220.04558 * 26 25 20 28 28 H 0.96996 * 119.99730 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46834 * 60.00397 * 9 7 2 30 30 H 1.08996 * 109.47718 * 300.00528 * 9 7 2 31 31 H 1.09000 * 109.46986 * 60.00556 * 10 9 7 32 32 H 1.08996 * 109.47407 * 300.00784 * 10 9 7 33 33 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 35 35 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 36 36 H 1.08998 * 109.61810 * 177.68423 * 19 17 15 37 37 H 1.09009 * 110.24389 * 56.56144 * 19 17 15 38 38 H 1.07996 * 119.84435 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.06156 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.06111 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.84010 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2790 -4.9672 0.0020 13 7 2.1657 -6.1344 0.0024 14 6 1.4331 -7.4031 0.0023 15 6 2.4273 -8.5661 0.0022 16 1 3.3853 -8.3653 -0.4776 17 6 1.8585 -9.9815 -0.1212 18 1 2.3824 -10.7176 -0.7309 19 6 0.3461 -10.1748 0.1553 20 6 0.1050 -9.8012 1.5980 21 6 -1.0745 -9.8023 2.3293 22 6 -1.0723 -9.4191 3.6552 23 6 0.1098 -9.0315 4.2582 24 6 1.2835 -9.0285 3.5320 25 6 1.2836 -9.4154 2.1991 26 6 2.4276 -9.4946 1.2177 27 1 3.3783 -9.8749 1.5914 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6246 -2.5563 0.8919 31 1 2.8725 -3.6040 0.8910 32 1 2.8713 -3.6047 -0.8889 33 1 3.1357 -6.1344 0.0020 34 1 0.8062 -7.4608 0.8922 35 1 0.8067 -7.4610 -0.8878 36 1 0.0744 -11.2176 -0.0087 37 1 -0.2422 -9.5307 -0.4985 38 1 -1.9983 -10.1043 1.8586 39 1 -1.9925 -9.4219 4.2207 40 1 0.1147 -8.7307 5.2955 41 1 2.2066 -8.7259 4.0039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360364371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = 2.980859 kcal Electronic energy + Delta-G solvation = -21377.722200 eV Core-core repulsion = 18222.463030 eV Total energy + Delta-G solvation = -3155.259171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16584 -38.95691 -37.46197 -34.15743 -33.39966 -31.87412 -31.02948 -30.58678 -27.93462 -27.25093 -25.14968 -23.25868 -21.79228 -21.46282 -20.58592 -20.05303 -19.11592 -16.89529 -16.78542 -16.05321 -15.62673 -15.42770 -15.11764 -14.96293 -14.58803 -14.31050 -13.78462 -13.63304 -13.55111 -12.95949 -12.90159 -12.47666 -12.26306 -12.12789 -11.90126 -11.76894 -11.24259 -11.11764 -10.92601 -10.90426 -10.56280 -10.53749 -10.27266 -9.91802 -9.62238 -9.12155 -8.95478 -8.87943 -8.68525 -8.59364 -8.29167 -5.93246 -3.97413 1.17426 1.25134 3.17019 3.34022 3.34800 3.41177 3.44585 3.58137 3.75181 4.11807 4.28304 4.49721 4.58387 4.63102 4.86029 4.90145 4.92148 4.98353 5.19466 5.31464 5.37676 5.41667 5.47548 5.57709 5.61338 5.68374 5.73229 5.81848 5.87492 6.01344 6.09849 6.28155 6.29642 6.30496 6.39290 6.49795 6.81050 6.85758 6.94590 7.78200 7.90719 7.97045 8.11021 8.42437 8.86162 9.11745 9.65920 11.17803 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003120 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.620146 B = 8971.555301 C = 9465.365461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.742 5.742 14 C 0.145 3.855 15 C -0.125 4.125 16 H 0.122 0.878 17 C -0.146 4.146 18 H 0.127 0.873 19 C -0.058 4.058 20 C -0.093 4.093 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.100 4.100 25 C -0.066 4.066 26 C -0.120 4.120 27 H 0.117 0.883 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -24.819 3.612 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.297 3.703 12 O -0.411 6.411 13 N -0.396 5.396 14 C 0.021 3.979 15 C -0.144 4.144 16 H 0.139 0.861 17 C -0.164 4.164 18 H 0.145 0.855 19 C -0.095 4.095 20 C -0.093 4.093 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.066 4.066 26 C -0.138 4.138 27 H 0.135 0.865 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.574 -24.703 3.619 25.222 hybrid contribution 0.976 0.891 0.108 1.326 sum 4.550 -23.812 3.727 24.528 Atomic orbital electron populations 1.70012 1.06055 1.26420 1.50360 1.25032 0.94819 0.99221 0.95359 0.86540 0.80009 0.83872 0.77565 1.19754 1.21029 1.21034 1.21270 0.92956 0.91026 1.51151 0.92565 1.18902 0.93206 0.89404 0.98613 1.21854 1.00684 0.91996 1.02404 1.21549 0.88664 0.85635 0.74485 1.90668 1.14509 1.87669 1.48233 1.46169 1.09929 1.05489 1.78015 1.20840 0.93347 0.81319 1.02415 1.22626 1.00942 0.90802 0.99983 0.86052 1.23336 0.95379 0.97273 1.00446 0.85513 1.20542 0.94239 1.02185 0.92490 1.20429 0.93605 0.99740 0.95498 1.20641 0.96998 1.00756 0.94159 1.21041 0.98227 0.99322 0.94847 1.21043 0.92561 1.00221 1.00033 1.20695 0.98520 0.99464 0.93113 1.19593 0.93769 0.99677 0.93602 1.21590 0.98437 1.05602 0.88215 0.86509 0.93035 0.95830 0.95848 0.90323 0.90296 0.77020 0.91107 0.91547 0.89774 0.89546 0.86131 0.85785 0.85787 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 11 C 0.51 10.26 7.83 -10.99 -0.09 10.17 16 12 O -0.54 -13.27 15.98 5.55 0.09 -13.18 16 13 N -0.74 -11.01 5.56 -60.29 -0.33 -11.35 16 14 C 0.14 1.97 4.92 -4.04 -0.02 1.95 16 15 C -0.13 -1.20 5.84 -90.62 -0.53 -1.73 16 16 H 0.12 0.93 8.04 -51.93 -0.42 0.52 16 17 C -0.15 -1.22 7.20 -89.35 -0.64 -1.86 16 18 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.06 -0.53 6.00 -26.71 -0.16 -0.69 16 20 C -0.09 -1.03 5.26 -104.45 -0.55 -1.58 16 21 C -0.11 -1.16 10.04 -39.46 -0.40 -1.56 16 22 C -0.12 -1.22 10.05 -39.66 -0.40 -1.62 16 23 C -0.12 -1.29 10.04 -39.66 -0.40 -1.69 16 24 C -0.10 -1.12 10.04 -39.45 -0.40 -1.52 16 25 C -0.07 -0.75 4.68 -104.46 -0.49 -1.24 16 26 C -0.12 -1.14 6.82 -91.47 -0.62 -1.76 16 27 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.40 4.55 8.40 -40.82 -0.34 4.20 16 34 H 0.07 1.13 5.96 -51.93 -0.31 0.82 16 35 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.83 7.80 -51.92 -0.40 0.42 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -35.49 342.26 -10.83 -46.32 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.08 Total: 2.26 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -5.38 Total: -19.00 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.40 Total: -38.43 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.49 -10.83 -46.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360364371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.297 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds