Wall clock time and date at job start Tue Mar 31 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46997 * 300.00218 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99821 * 3 2 1 7 7 C 1.37884 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47303 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 H 1.09002 * 115.53893 * 330.80297 * 15 14 13 17 17 C 1.53042 * 117.48160 * 185.21060 * 15 14 13 18 18 H 1.08997 * 119.40889 * 140.81878 * 17 15 14 19 19 C 1.54961 * 117.62874 * 343.45203 * 17 15 14 20 20 C 1.50973 * 107.18293 * 296.94911 * 19 17 15 21 21 C 1.38780 * 129.72051 * 179.97438 * 20 19 17 22 22 C 1.38020 * 120.30852 * 179.97438 * 21 20 19 23 23 C 1.38243 * 119.88200 * 0.04198 * 22 21 20 24 24 C 1.38020 * 119.88358 * 0.02562 * 23 22 21 25 25 C 1.37809 * 110.45834 * 359.96072 * 20 19 17 26 26 C 1.50936 * 110.48428 * 359.94773 * 25 20 19 27 27 H 1.09000 * 117.15880 * 220.04558 * 26 25 20 28 28 H 0.96996 * 119.99730 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46834 * 60.00397 * 9 7 2 30 30 H 1.08996 * 109.47718 * 300.00528 * 9 7 2 31 31 H 1.09000 * 109.46986 * 60.00556 * 10 9 7 32 32 H 1.08996 * 109.47407 * 300.00784 * 10 9 7 33 33 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 35 35 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 36 36 H 1.08998 * 109.61810 * 177.68423 * 19 17 15 37 37 H 1.09009 * 110.24389 * 56.56144 * 19 17 15 38 38 H 1.07996 * 119.84435 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.06156 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.06111 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.84010 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2790 -4.9672 0.0020 13 7 2.1657 -6.1344 0.0024 14 6 1.4331 -7.4031 0.0023 15 6 2.4273 -8.5661 0.0022 16 1 3.3853 -8.3653 -0.4776 17 6 1.8585 -9.9815 -0.1212 18 1 2.3824 -10.7176 -0.7309 19 6 0.3461 -10.1748 0.1553 20 6 0.1050 -9.8012 1.5980 21 6 -1.0745 -9.8023 2.3293 22 6 -1.0723 -9.4191 3.6552 23 6 0.1098 -9.0315 4.2582 24 6 1.2835 -9.0285 3.5320 25 6 1.2836 -9.4154 2.1991 26 6 2.4276 -9.4946 1.2177 27 1 3.3783 -9.8749 1.5914 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6246 -2.5563 0.8919 31 1 2.8725 -3.6040 0.8910 32 1 2.8713 -3.6047 -0.8889 33 1 3.1357 -6.1344 0.0020 34 1 0.8062 -7.4608 0.8922 35 1 0.8067 -7.4610 -0.8878 36 1 0.0744 -11.2176 -0.0087 37 1 -0.2422 -9.5307 -0.4985 38 1 -1.9983 -10.1043 1.8586 39 1 -1.9925 -9.4219 4.2207 40 1 0.1147 -8.7307 5.2955 41 1 2.2066 -8.7259 4.0039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360364371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:07 Heat of formation + Delta-G solvation = -18.842785 kcal Electronic energy + Delta-G solvation = -21378.668545 eV Core-core repulsion = 18222.463030 eV Total energy + Delta-G solvation = -3156.205515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.95304 -40.52724 -38.29778 -35.67212 -35.41841 -33.06208 -32.61475 -31.48326 -28.99263 -28.42115 -26.93552 -24.13046 -23.47201 -22.52078 -21.43411 -21.25642 -20.26272 -18.76696 -17.74733 -17.41639 -16.91340 -16.71892 -16.47471 -16.25823 -15.88628 -15.56766 -14.99348 -14.69608 -14.49792 -14.29859 -14.14010 -13.94771 -13.64948 -13.23609 -13.12846 -12.99816 -12.83253 -12.51804 -12.43879 -12.01871 -11.92988 -11.68575 -11.63433 -11.35990 -11.28936 -11.10825 -10.62855 -10.58006 -10.03688 -9.69763 -9.40182 -8.17919 -6.32206 0.36524 0.42755 1.42396 1.44110 1.57473 1.71541 2.19672 2.43631 2.54344 2.93249 3.15101 3.35518 3.53349 3.80918 3.93654 4.02743 4.11684 4.13273 4.18203 4.23069 4.41114 4.51515 4.54337 4.56749 4.62816 4.71097 4.76223 4.83941 4.92776 5.00691 5.07480 5.11388 5.17167 5.30587 5.46908 5.50258 5.53504 5.57916 5.62661 5.69075 5.85477 6.07811 6.17561 6.63251 6.86556 7.35952 7.38526 8.95168 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003120 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.620146 B = 8971.555301 C = 9465.365461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.118 4.118 11 C 0.508 3.492 12 O -0.593 6.593 13 N -0.714 5.714 14 C 0.147 3.853 15 C -0.126 4.126 16 H 0.152 0.848 17 C -0.129 4.129 18 H 0.159 0.841 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.118 4.118 25 C -0.084 4.084 26 C -0.123 4.123 27 H 0.138 0.862 28 H 0.263 0.737 29 H -0.018 1.018 30 H -0.021 1.021 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.418 0.582 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.860 -25.608 3.191 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.296 3.704 12 O -0.474 6.474 13 N -0.368 5.368 14 C 0.023 3.977 15 C -0.144 4.144 16 H 0.169 0.831 17 C -0.147 4.147 18 H 0.177 0.823 19 C -0.099 4.099 20 C -0.110 4.110 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.136 4.136 25 C -0.084 4.084 26 C -0.141 4.141 27 H 0.156 0.844 28 H 0.071 0.929 29 H 0.000 1.000 30 H -0.002 1.002 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.255 0.745 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.860 -25.543 3.198 26.641 hybrid contribution -0.106 1.081 0.270 1.119 sum 6.755 -24.462 3.468 25.614 Atomic orbital electron populations 1.70194 1.08386 1.27743 1.51563 1.26169 0.95729 1.04042 0.94619 0.85247 0.79328 0.77952 0.77544 1.17482 1.20585 1.20665 1.21748 0.94039 0.91521 1.50657 0.90462 1.18698 0.93752 0.92639 0.94579 1.21631 0.99263 0.89938 1.04924 1.21405 0.87823 0.86931 0.74209 1.90654 1.16925 1.88484 1.51290 1.45863 1.10983 1.04511 1.75418 1.20835 0.94241 0.82016 1.00619 1.22603 1.01089 0.89616 1.01089 0.83095 1.23519 0.94652 0.96691 0.99876 0.82346 1.20638 0.95152 1.03090 0.91039 1.20797 0.93777 0.99795 0.96652 1.20960 0.97763 1.01051 0.94620 1.21355 0.99049 0.99211 0.95138 1.21354 0.92665 1.00240 1.00993 1.20989 0.99202 0.99807 0.93606 1.19959 0.94795 0.99596 0.94077 1.21688 0.98739 1.05616 0.88053 0.84436 0.92872 0.99984 1.00225 0.87805 0.87465 0.74476 0.93730 0.92790 0.87849 0.90565 0.84972 0.84148 0.84233 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.50 13.29 21.45 0.28 -60.22 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.75 16 4 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 9 C 0.04 2.34 4.26 29.85 0.13 2.47 16 10 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 11 C 0.51 20.62 7.83 87.66 0.69 21.31 16 12 O -0.59 -30.87 15.98 -3.04 -0.05 -30.92 16 13 N -0.71 -20.17 5.56 -463.04 -2.57 -22.75 16 14 C 0.15 3.88 4.92 86.38 0.42 4.31 16 15 C -0.13 -2.05 5.84 -10.80 -0.06 -2.11 16 16 H 0.15 1.62 8.04 -2.39 -0.02 1.60 16 17 C -0.13 -1.77 7.20 -9.97 -0.07 -1.84 16 18 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 19 C -0.06 -1.07 6.00 30.61 0.18 -0.88 16 20 C -0.11 -2.44 5.26 -19.75 -0.10 -2.54 16 21 C -0.13 -2.80 10.04 22.35 0.22 -2.57 16 22 C -0.13 -2.79 10.05 22.22 0.22 -2.57 16 23 C -0.13 -2.91 10.04 22.22 0.22 -2.69 16 24 C -0.12 -2.63 10.04 22.35 0.22 -2.40 16 25 C -0.08 -1.85 4.68 -19.76 -0.09 -1.94 16 26 C -0.12 -2.01 6.82 -11.34 -0.08 -2.08 16 27 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 29 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 30 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 31 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 33 H 0.42 8.25 8.40 -92.71 -0.78 7.47 16 34 H 0.04 1.45 5.96 -2.38 -0.01 1.44 16 35 H 0.05 1.58 8.02 -2.39 -0.02 1.56 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.45 7.80 -2.38 -0.02 1.43 16 38 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -81.61 342.26 2.71 -78.90 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.25 Total: 17.58 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 2.77 Total: -29.35 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.29 Total: -82.96 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -81.61 2.71 -78.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360364371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.053 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds