Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34948 * 126.03541 * 2 1 4 4 C 1.35314 * 107.74634 * 180.15118 * 3 2 1 5 5 C 1.50698 * 126.04086 * 179.87129 * 4 3 2 6 6 N 1.46904 * 109.47217 * 259.68467 * 5 4 3 7 7 C 1.46904 * 110.99787 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46594 * 184.37664 * 7 6 5 9 9 C 1.50697 * 115.55280 * 301.16470 * 8 7 6 10 10 H 1.08006 * 119.99830 * 95.21305 * 9 8 7 11 11 C 1.37873 * 120.00244 * 275.21867 * 9 8 7 12 12 N 1.31518 * 119.99977 * 7.20074 * 11 9 8 13 13 Si 1.86805 * 120.00052 * 187.20001 * 11 9 8 14 14 H 1.48494 * 109.46883 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.46787 * 299.99712 * 13 11 9 16 16 H 1.48496 * 109.47000 * 59.99754 * 13 11 9 17 17 C 1.52999 * 117.49802 * 86.84303 * 8 7 6 18 18 C 1.53011 * 117.49603 * 155.49833 * 8 7 6 19 19 C 1.39873 * 107.91745 * 359.60668 * 4 3 2 20 20 C 1.50702 * 125.89815 * 180.21946 * 19 4 3 21 21 F 1.39899 * 109.47435 * 209.99831 * 20 19 4 22 22 F 1.39898 * 109.47313 * 330.00692 * 20 19 4 23 23 N 1.30835 * 108.20447 * 0.24495 * 19 4 3 24 24 H 1.09005 * 109.46907 * 270.26149 * 1 2 3 25 25 H 1.09004 * 109.47280 * 30.25702 * 1 2 3 26 26 H 1.08993 * 109.47082 * 150.26396 * 1 2 3 27 27 H 1.08001 * 126.13049 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.47183 * 139.69038 * 5 4 3 29 29 H 1.08995 * 109.47302 * 19.68760 * 5 4 3 30 30 H 1.00901 * 110.99574 * 56.05363 * 6 5 4 31 31 H 1.08993 * 109.47122 * 64.37959 * 7 6 5 32 32 H 1.08995 * 109.47153 * 304.37479 * 7 6 5 33 33 H 0.97001 * 119.99905 * 355.40497 * 12 11 9 34 34 H 1.09002 * 117.49514 * 215.00171 * 17 8 7 35 35 H 1.08997 * 117.49941 * 0.02562 * 17 8 7 36 36 H 1.08992 * 117.49632 * 359.97438 * 18 8 7 37 37 H 1.08992 * 117.49462 * 144.96957 * 18 8 7 38 38 H 1.09004 * 109.46886 * 89.99798 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7679 1.5454 -0.0074 6 7 5.3065 1.6287 -1.3716 7 6 6.5038 2.4788 -1.4139 8 6 6.9711 2.6297 -2.8629 9 6 7.3101 1.3449 -3.5738 10 1 6.5694 0.8572 -4.1903 11 6 8.5657 0.7919 -3.4370 12 7 9.4200 1.3045 -2.5785 13 14 9.0533 -0.6853 -4.4712 14 1 10.4435 -1.0863 -4.1369 15 1 8.1313 -1.8143 -4.1873 16 1 8.9726 -0.3301 -5.9108 17 6 6.3466 3.7529 -3.6932 18 6 7.7956 3.8700 -3.2138 19 6 3.5346 -0.7321 0.0036 20 6 4.7497 -1.6236 0.0075 21 9 4.4497 -2.8237 -0.6458 22 9 5.8011 -0.9817 -0.6556 23 7 2.2891 -1.1327 0.0056 24 1 -0.3633 0.0047 1.0277 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5097 27 1 1.9281 2.1194 -0.0004 28 1 5.5220 1.1210 0.6556 29 1 4.4999 2.5435 0.3390 30 1 4.6052 1.9589 -2.0176 31 1 7.2962 2.0200 -0.8225 32 1 6.2669 3.4607 -1.0044 33 1 9.1919 2.1109 -2.0900 34 1 6.1809 3.5625 -4.7536 35 1 5.6033 4.3846 -3.2069 36 1 8.0048 4.5785 -2.4123 37 1 8.5835 3.7564 -3.9583 38 1 5.0431 -1.8333 1.0361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361135755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = 8.522729 kcal Electronic energy + Delta-G solvation = -23060.097718 eV Core-core repulsion = 19383.142082 eV Total energy + Delta-G solvation = -3676.955636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.43543 -46.42523 -41.31521 -37.23851 -34.87207 -33.39053 -31.64094 -30.54647 -28.56765 -26.50625 -24.90536 -24.29664 -22.82702 -21.15950 -20.86186 -20.01469 -19.17069 -17.28304 -17.02270 -16.50568 -16.37383 -15.70482 -15.53003 -14.83712 -14.18621 -13.92441 -13.66467 -13.55314 -13.33756 -13.09143 -13.02041 -12.84766 -12.70137 -12.41491 -12.20593 -12.06089 -11.37197 -11.27468 -10.97377 -10.71133 -10.63945 -10.53395 -10.34853 -9.94438 -9.49749 -9.42136 -8.53695 -8.37582 -8.24473 -8.08780 -7.41721 -6.11096 -3.79302 1.69232 2.26774 2.51633 3.58677 3.63677 3.79528 3.92211 4.28737 4.55676 4.68908 4.71467 4.87808 4.95649 5.03112 5.13340 5.26408 5.28207 5.35758 5.52570 5.58465 5.80332 5.97016 6.02585 6.19593 6.24916 6.36290 6.41093 6.47874 6.62348 6.79262 6.86157 6.96646 7.33229 7.43214 7.49945 7.98793 8.21950 8.51613 8.68213 9.12606 9.91270 11.29279 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.005736 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.727274 B = 4880.462236 C = 5927.876689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.372 5.372 3 C 0.054 3.946 4 C -0.192 4.192 5 C 0.134 3.866 6 N -0.650 5.650 7 C 0.106 3.894 8 C 0.030 3.970 9 C -0.541 4.541 10 H 0.050 0.950 11 C 0.028 3.972 12 N -0.914 5.914 13 Si 1.062 2.938 14 H -0.286 1.286 15 H -0.287 1.287 16 H -0.292 1.292 17 C -0.203 4.203 18 C -0.181 4.181 19 C 0.020 3.980 20 C 0.353 3.647 21 F -0.199 7.199 22 F -0.152 7.152 23 N -0.265 5.265 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.176 0.824 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.331 0.669 31 H 0.069 0.931 32 H -0.007 1.007 33 H 0.271 0.729 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 0.146 8.582 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.155 5.155 3 C -0.092 4.092 4 C -0.203 4.203 5 C 0.004 3.996 6 N -0.280 5.280 7 C -0.023 4.023 8 C 0.029 3.971 9 C -0.579 4.579 10 H 0.068 0.932 11 C -0.176 4.176 12 N -0.550 5.550 13 Si 0.891 3.109 14 H -0.211 1.211 15 H -0.213 1.213 16 H -0.219 1.219 17 C -0.240 4.240 18 C -0.219 4.219 19 C -0.147 4.147 20 C 0.297 3.703 21 F -0.180 7.180 22 F -0.133 7.133 23 N -0.089 5.089 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.193 0.807 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.011 0.989 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.236 -2.552 8.351 17.561 hybrid contribution -1.340 2.829 0.228 3.138 sum -16.576 0.277 8.578 18.666 Atomic orbital electron populations 1.21870 0.73926 1.04696 1.03305 1.48395 1.06571 1.03616 1.56875 1.22339 0.90448 0.93402 1.02999 1.19869 0.94773 0.92568 1.13107 1.20188 0.91660 0.94617 0.93168 1.60224 1.07786 1.55975 1.03989 1.21583 0.91814 0.90923 0.98002 1.19166 0.97130 0.89898 0.90924 1.21031 0.99392 1.06833 1.30655 0.93221 1.25573 0.93206 1.02086 0.96725 1.70738 1.39269 1.21660 1.23307 0.83650 0.76066 0.75870 0.75314 1.21112 1.21332 1.21898 1.22885 0.95241 1.05726 1.00144 1.22750 0.93467 1.02974 1.02725 1.22792 0.93687 0.94805 1.03430 1.19372 0.81519 0.76128 0.93266 1.92999 1.93714 1.47058 1.84232 1.93303 1.56004 1.81113 1.82844 1.77290 1.00466 1.07909 1.23198 0.90728 0.89324 0.89165 0.80656 0.90589 0.95895 0.85214 0.91290 0.98926 0.91804 0.90343 0.92102 0.91861 0.89860 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 11.47 59.85 0.69 1.41 16 2 N -0.37 -4.54 4.01 -68.16 -0.27 -4.82 16 3 C 0.05 0.65 11.40 -17.22 -0.20 0.45 16 4 C -0.19 -2.88 5.57 -105.05 -0.59 -3.46 16 5 C 0.13 2.15 5.12 -4.97 -0.03 2.13 16 6 N -0.65 -12.94 5.38 -115.06 -0.62 -13.55 16 7 C 0.11 2.33 5.49 -3.82 -0.02 2.31 16 8 C 0.03 0.72 1.05 -155.66 -0.16 0.56 16 9 C -0.54 -15.22 8.61 -34.44 -0.30 -15.52 16 10 H 0.05 1.45 7.82 -52.48 -0.41 1.04 16 11 C 0.03 0.82 5.39 -17.82 -0.10 0.72 16 12 N -0.91 -27.44 13.57 55.43 0.75 -26.69 16 13 Si 1.06 26.37 29.91 -169.99 -5.08 21.28 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.20 -4.41 9.94 -26.69 -0.27 -4.68 16 18 C -0.18 -4.21 8.76 -26.69 -0.23 -4.44 16 19 C 0.02 0.33 6.85 -82.40 -0.56 -0.23 16 20 C 0.35 5.74 5.79 36.01 0.21 5.95 16 21 F -0.20 -3.54 17.27 2.25 0.04 -3.50 16 22 F -0.15 -3.12 14.86 2.25 0.03 -3.09 16 23 N -0.27 -4.16 12.51 33.67 0.42 -3.74 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 28 H 0.08 1.26 7.79 -51.93 -0.40 0.85 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.33 6.46 8.67 -39.29 -0.34 6.12 16 31 H 0.07 1.69 7.76 -51.93 -0.40 1.29 16 32 H -0.01 -0.15 8.10 -51.93 -0.42 -0.57 16 33 H 0.27 8.01 6.15 -40.82 -0.25 7.76 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -34.00 331.88 -6.54 -40.53 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.25 Total: 3.38 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.55 Total: -14.81 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.28 Total: -48.80 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.07 Total: -6.59 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.00 -6.54 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361135755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.055 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds