Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34948 * 126.03541 * 2 1 4 4 C 1.35314 * 107.74634 * 180.15118 * 3 2 1 5 5 C 1.50698 * 126.04086 * 179.87129 * 4 3 2 6 6 N 1.46904 * 109.47217 * 259.68467 * 5 4 3 7 7 C 1.46904 * 110.99787 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46594 * 184.37664 * 7 6 5 9 9 C 1.50697 * 115.55280 * 301.16470 * 8 7 6 10 10 H 1.08006 * 119.99830 * 95.21305 * 9 8 7 11 11 C 1.37873 * 120.00244 * 275.21867 * 9 8 7 12 12 N 1.31518 * 119.99977 * 7.20074 * 11 9 8 13 13 Si 1.86805 * 120.00052 * 187.20001 * 11 9 8 14 14 H 1.48494 * 109.46883 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.46787 * 299.99712 * 13 11 9 16 16 H 1.48496 * 109.47000 * 59.99754 * 13 11 9 17 17 C 1.52999 * 117.49802 * 86.84303 * 8 7 6 18 18 C 1.53011 * 117.49603 * 155.49833 * 8 7 6 19 19 C 1.39873 * 107.91745 * 359.60668 * 4 3 2 20 20 C 1.50702 * 125.89815 * 180.21946 * 19 4 3 21 21 F 1.39899 * 109.47435 * 209.99831 * 20 19 4 22 22 F 1.39898 * 109.47313 * 330.00692 * 20 19 4 23 23 N 1.30835 * 108.20447 * 0.24495 * 19 4 3 24 24 H 1.09005 * 109.46907 * 270.26149 * 1 2 3 25 25 H 1.09004 * 109.47280 * 30.25702 * 1 2 3 26 26 H 1.08993 * 109.47082 * 150.26396 * 1 2 3 27 27 H 1.08001 * 126.13049 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.47183 * 139.69038 * 5 4 3 29 29 H 1.08995 * 109.47302 * 19.68760 * 5 4 3 30 30 H 1.00901 * 110.99574 * 56.05363 * 6 5 4 31 31 H 1.08993 * 109.47122 * 64.37959 * 7 6 5 32 32 H 1.08995 * 109.47153 * 304.37479 * 7 6 5 33 33 H 0.97001 * 119.99905 * 355.40497 * 12 11 9 34 34 H 1.09002 * 117.49514 * 215.00171 * 17 8 7 35 35 H 1.08997 * 117.49941 * 0.02562 * 17 8 7 36 36 H 1.08992 * 117.49632 * 359.97438 * 18 8 7 37 37 H 1.08992 * 117.49462 * 144.96957 * 18 8 7 38 38 H 1.09004 * 109.46886 * 89.99798 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7679 1.5454 -0.0074 6 7 5.3065 1.6287 -1.3716 7 6 6.5038 2.4788 -1.4139 8 6 6.9711 2.6297 -2.8629 9 6 7.3101 1.3449 -3.5738 10 1 6.5694 0.8572 -4.1903 11 6 8.5657 0.7919 -3.4370 12 7 9.4200 1.3045 -2.5785 13 14 9.0533 -0.6853 -4.4712 14 1 10.4435 -1.0863 -4.1369 15 1 8.1313 -1.8143 -4.1873 16 1 8.9726 -0.3301 -5.9108 17 6 6.3466 3.7529 -3.6932 18 6 7.7956 3.8700 -3.2138 19 6 3.5346 -0.7321 0.0036 20 6 4.7497 -1.6236 0.0075 21 9 4.4497 -2.8237 -0.6458 22 9 5.8011 -0.9817 -0.6556 23 7 2.2891 -1.1327 0.0056 24 1 -0.3633 0.0047 1.0277 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5097 27 1 1.9281 2.1194 -0.0004 28 1 5.5220 1.1210 0.6556 29 1 4.4999 2.5435 0.3390 30 1 4.6052 1.9589 -2.0176 31 1 7.2962 2.0200 -0.8225 32 1 6.2669 3.4607 -1.0044 33 1 9.1919 2.1109 -2.0900 34 1 6.1809 3.5625 -4.7536 35 1 5.6033 4.3846 -3.2069 36 1 8.0048 4.5785 -2.4123 37 1 8.5835 3.7564 -3.9583 38 1 5.0431 -1.8333 1.0361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361135755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -13.920269 kcal Electronic energy + Delta-G solvation = -23061.070919 eV Core-core repulsion = 19383.142082 eV Total energy + Delta-G solvation = -3677.928837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80992 -47.84172 -42.32822 -39.03190 -36.26144 -34.42924 -33.77701 -31.71928 -29.52916 -27.89502 -26.79808 -25.69496 -24.18705 -22.93967 -21.89594 -21.30258 -20.97880 -18.64559 -18.39156 -18.00887 -17.80483 -16.86437 -16.44099 -16.36923 -15.59973 -15.58131 -15.36701 -15.02208 -14.75465 -14.40356 -14.23776 -14.17183 -14.11313 -13.80698 -13.47907 -13.37296 -12.98762 -12.67345 -12.60816 -12.56341 -12.21349 -12.14859 -11.93108 -11.70978 -11.27276 -10.49035 -10.37406 -10.29895 -10.14309 -9.52455 -8.89605 -8.36658 -6.03716 0.69805 1.39861 1.43164 1.55503 1.63855 1.81078 2.66735 2.84271 3.18578 3.29454 3.39610 3.50996 3.73037 3.91109 4.04276 4.09960 4.19750 4.28757 4.41373 4.43668 4.49722 4.60134 4.65908 4.69014 4.69527 4.87861 4.88189 4.97434 5.07730 5.14872 5.26916 5.50369 5.64026 6.01734 6.29328 6.41431 6.45823 6.53005 6.78373 6.92606 7.71346 9.05149 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.005736 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.727274 B = 4880.462236 C = 5927.876689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.364 5.364 3 C 0.078 3.922 4 C -0.221 4.221 5 C 0.142 3.858 6 N -0.667 5.667 7 C 0.123 3.877 8 C -0.002 4.002 9 C -0.544 4.544 10 H 0.029 0.971 11 C -0.017 4.017 12 N -0.939 5.939 13 Si 1.097 2.903 14 H -0.285 1.285 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.175 4.175 18 C -0.183 4.183 19 C 0.000 4.000 20 C 0.343 3.657 21 F -0.212 7.212 22 F -0.183 7.183 23 N -0.297 5.297 24 H 0.096 0.904 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.333 0.667 31 H 0.033 0.967 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.466 1.540 9.083 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.147 5.147 3 C -0.069 4.069 4 C -0.233 4.233 5 C 0.013 3.987 6 N -0.298 5.298 7 C -0.006 4.006 8 C -0.003 4.003 9 C -0.582 4.582 10 H 0.048 0.952 11 C -0.216 4.216 12 N -0.576 5.576 13 Si 0.922 3.078 14 H -0.211 1.211 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.212 4.212 18 C -0.221 4.221 19 C -0.166 4.166 20 C 0.287 3.713 21 F -0.193 7.193 22 F -0.164 7.164 23 N -0.122 5.122 24 H 0.114 0.886 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.237 0.763 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.842 -1.164 8.848 19.950 hybrid contribution -0.712 2.414 0.085 2.518 sum -18.554 1.250 8.933 20.631 Atomic orbital electron populations 1.22339 0.70898 1.06289 1.05255 1.48841 1.08174 1.02802 1.54850 1.22908 0.89244 0.94977 0.99800 1.19853 0.95643 0.91919 1.15838 1.20082 0.91819 0.96099 0.90721 1.60091 1.07480 1.55824 1.06404 1.21203 0.91821 0.91998 0.95588 1.19249 0.99314 0.89081 0.92610 1.21229 0.98678 1.08164 1.30114 0.95247 1.26604 0.93744 1.04038 0.97241 1.70822 1.39884 1.22228 1.24703 0.83173 0.75687 0.73712 0.75181 1.21074 1.21257 1.20059 1.22878 0.94830 1.03855 0.99641 1.22669 0.93786 1.02885 1.02794 1.22748 0.93702 0.95449 1.04687 1.19905 0.81401 0.75624 0.94327 1.92957 1.93795 1.47863 1.84719 1.93229 1.57654 1.81786 1.83691 1.77219 1.00619 1.09910 1.24431 0.88584 0.86071 0.89279 0.76335 0.92077 0.93244 0.84954 0.94832 0.96570 0.92547 0.90930 0.88620 0.89904 0.92477 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.47 127.77 1.47 2.39 16 2 N -0.36 -7.81 4.01 -369.56 -1.48 -9.29 16 3 C 0.08 1.60 11.40 83.54 0.95 2.55 16 4 C -0.22 -6.24 5.57 -20.14 -0.11 -6.35 16 5 C 0.14 4.38 5.12 85.56 0.44 4.82 16 6 N -0.67 -26.09 5.38 -517.93 -2.78 -28.87 16 7 C 0.12 5.36 5.49 86.30 0.47 5.83 16 8 C 0.00 -0.09 1.05 -52.93 -0.06 -0.15 16 9 C -0.54 -31.07 8.61 25.60 0.22 -30.85 16 10 H 0.03 1.75 7.82 -2.91 -0.02 1.73 16 11 C -0.02 -1.01 5.39 84.65 0.46 -0.55 16 12 N -0.94 -57.68 13.57 21.45 0.29 -57.39 16 13 Si 1.10 54.15 29.91 68.60 2.05 56.20 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 C -0.17 -7.26 9.94 30.62 0.30 -6.95 16 18 C -0.18 -8.39 8.76 30.62 0.27 -8.12 16 19 C 0.00 0.00 6.85 43.10 0.30 0.30 16 20 C 0.34 11.35 5.79 71.24 0.41 11.76 16 21 F -0.21 -7.74 17.27 44.97 0.78 -6.96 16 22 F -0.18 -7.78 14.86 44.97 0.67 -7.11 16 23 N -0.30 -8.97 12.51 -47.38 -0.59 -9.56 16 24 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.06 2.03 7.79 -2.38 -0.02 2.01 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.33 12.50 8.67 -89.69 -0.78 11.72 16 31 H 0.03 1.68 7.76 -2.39 -0.02 1.66 16 32 H 0.02 0.63 8.10 -2.39 -0.02 0.61 16 33 H 0.26 16.06 6.15 -92.71 -0.57 15.49 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.10 3.31 8.14 -2.39 -0.02 3.30 16 36 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.16 3.77 8.14 -2.39 -0.02 3.75 16 Total: -1.00 -76.10 331.88 4.54 -71.55 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.50 Total: 16.77 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 5.12 Total: -25.32 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.57 Total: -105.12 kcal Atomic # 9 Polarization: -15.52 SS G_CDS: 1.44 Total: -14.08 kcal Atomic # 14 Polarization: 54.15 SS G_CDS: 2.05 Total: 56.20 kcal Total: -76.10 4.54 -71.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361135755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.634 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds