Wall clock time and date at job start Tue Mar 31 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99755 * 2 1 4 4 H 1.48495 * 109.47156 * 240.00193 * 3 2 1 5 5 H 1.48506 * 109.46738 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46864 * 119.99562 * 3 2 1 7 7 C 1.37875 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99938 * 165.04111 * 7 2 1 9 9 C 1.50704 * 119.99984 * 345.04180 * 7 2 1 10 10 C 1.53003 * 115.55675 * 322.42221 * 9 7 2 11 11 N 1.46502 * 109.47169 * 269.83590 * 10 9 7 12 12 C 1.30576 * 119.99464 * 117.70063 * 11 10 9 13 13 N 1.36474 * 127.09439 * 354.46335 * 12 11 10 14 14 N 1.28390 * 109.66521 * 179.85919 * 13 12 11 15 15 N 1.28610 * 111.47090 * 0.42191 * 14 13 12 16 16 H 0.97000 * 125.99826 * 179.71188 * 15 14 13 17 17 N 1.38695 * 127.09250 * 174.78358 * 12 11 10 18 18 C 1.39823 * 127.47627 * 359.97438 * 17 12 11 19 19 C 1.38902 * 120.06979 * 314.72485 * 18 17 12 20 20 C 1.38114 * 119.92310 * 179.74356 * 19 18 17 21 21 C 1.38282 * 120.06996 * 0.51374 * 20 19 18 22 22 C 1.38288 * 120.14965 * 359.76400 * 21 20 19 23 23 C 1.38102 * 120.07334 * 359.97438 * 22 21 20 24 24 C 1.52993 * 117.49975 * 176.73729 * 9 7 2 25 25 C 1.52998 * 60.02974 * 252.49651 * 24 9 7 26 26 H 0.96998 * 120.00796 * 5.03525 * 1 2 3 27 27 H 1.09000 * 109.47565 * 29.84075 * 10 9 7 28 28 H 1.09005 * 109.46582 * 149.84328 * 10 9 7 29 29 H 1.07995 * 120.04108 * 359.97438 * 19 18 17 30 30 H 1.07996 * 119.96397 * 180.25563 * 20 19 18 31 31 H 1.07999 * 119.92519 * 179.74778 * 21 20 19 32 32 H 1.07998 * 119.96050 * 180.02562 * 22 21 20 33 33 H 1.07999 * 120.03609 * 180.02562 * 23 22 21 34 34 H 1.09004 * 117.49962 * 359.97438 * 24 9 7 35 35 H 1.08997 * 117.50446 * 144.99821 * 24 9 7 36 36 H 1.09005 * 117.49641 * 107.50293 * 25 24 9 37 37 H 1.09002 * 117.49830 * 252.51504 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0572 -1.2098 -0.2409 9 6 1.2895 -2.4769 0.3380 10 6 0.2331 -2.3736 1.4399 11 7 0.8569 -2.6310 2.7402 12 6 0.8688 -1.6988 3.6545 13 7 0.4410 -0.4097 3.5213 14 7 0.6032 0.2162 4.6305 15 7 1.1232 -0.5439 5.5283 16 1 1.3390 -0.2863 6.4382 17 7 1.3245 -1.8128 4.9595 18 6 1.8665 -2.9450 5.5755 19 6 1.2566 -4.1828 5.4168 20 6 1.7976 -5.3001 6.0223 21 6 2.9390 -5.1855 6.7944 22 6 3.5454 -3.9537 6.9590 23 6 3.0127 -2.8334 6.3519 24 6 2.0906 -3.7772 0.2470 25 6 1.0252 -3.4607 -0.8045 26 1 -0.4851 0.8367 -0.0737 27 1 -0.1994 -1.3731 1.4361 28 1 -0.5513 -3.1092 1.2613 29 1 0.3625 -4.2722 4.8177 30 1 1.3262 -6.2635 5.8960 31 1 3.3578 -6.0600 7.2701 32 1 4.4371 -3.8677 7.5623 33 1 3.4870 -1.8717 6.4806 34 1 3.1347 -3.7048 -0.0573 35 1 1.8653 -4.5590 0.9723 36 1 1.3685 -3.1801 -1.8002 37 1 0.0987 -4.0341 -0.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362356595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:36 Heat of formation + Delta-G solvation = 225.281504 kcal Electronic energy + Delta-G solvation = -22206.889996 eV Core-core repulsion = 18990.022912 eV Total energy + Delta-G solvation = -3216.867084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.27702 -39.17395 -36.74552 -34.76045 -34.13472 -32.00636 -31.18726 -31.02082 -29.43959 -25.80586 -25.01642 -24.35364 -22.91056 -22.28332 -21.02365 -20.62504 -19.14333 -18.50162 -17.17959 -16.28936 -16.26391 -15.78386 -14.95416 -14.68670 -14.36115 -14.14927 -13.63190 -13.53302 -13.12144 -13.05201 -12.65016 -11.83808 -11.76865 -11.51652 -11.36801 -11.21067 -11.00323 -10.80928 -10.74201 -10.61729 -10.31015 -10.08916 -9.35812 -9.07820 -8.91674 -8.84927 -8.61544 -8.49329 -7.69878 -6.97658 -5.88634 -3.89413 0.92880 1.27690 1.34957 1.54369 3.38231 3.44992 3.47418 3.47875 3.60912 3.92527 4.51249 4.73466 4.81034 4.95074 5.01266 5.16302 5.22924 5.26566 5.33319 5.61821 5.73071 5.85082 5.95175 6.25326 6.34569 6.39639 6.41142 6.62101 6.71396 6.77031 6.80579 6.93727 7.09873 7.24111 7.39654 7.52164 7.59200 7.79282 8.18712 8.50360 8.64217 8.86787 9.03765 9.67858 11.12882 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.006040 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.830674 B = 4634.675503 C = 5502.633918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.083 3.917 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.495 4.495 8 H 0.054 0.946 9 C 0.065 3.935 10 C 0.081 3.919 11 N -0.508 5.508 12 C 0.453 3.547 13 N -0.265 5.265 14 N 0.087 4.913 15 N -0.351 5.351 16 H 0.465 0.535 17 N -0.415 5.415 18 C 0.193 3.807 19 C -0.102 4.102 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.143 4.143 24 C -0.197 4.197 25 C -0.202 4.202 26 H 0.263 0.737 27 H 0.123 0.877 28 H 0.049 0.951 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -5.876 16.943 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.121 4.121 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.063 3.937 10 C -0.047 4.047 11 N -0.241 5.241 12 C 0.086 3.914 13 N -0.165 5.165 14 N 0.091 4.909 15 N -0.200 5.200 16 H 0.319 0.681 17 N -0.226 5.226 18 C 0.099 3.901 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.151 4.151 22 C -0.119 4.119 23 C -0.165 4.165 24 C -0.235 4.235 25 C -0.240 4.240 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.153 -5.591 16.377 17.438 hybrid contribution 0.943 0.826 0.529 1.360 sum 3.096 -4.765 16.906 17.835 Atomic orbital electron populations 1.69721 1.05859 1.26927 1.47513 1.24808 0.94640 0.98525 0.94100 0.86755 0.79869 0.83700 0.78243 1.20637 1.20956 1.20555 1.20449 0.95185 0.89928 1.47641 0.92742 1.18840 0.94623 0.88435 0.91770 1.21915 0.94668 1.04654 0.83507 1.72216 1.21731 1.26430 1.03763 1.21638 0.95881 0.89522 0.84378 1.77251 1.23627 1.04785 1.10804 1.77625 1.01378 1.17263 0.94624 1.47762 1.58790 0.99099 1.14311 0.68085 1.45152 1.65992 1.01917 1.09511 1.17175 0.92615 0.83610 0.96692 1.21099 1.00370 0.91097 0.99822 1.21024 0.96034 0.98006 0.96431 1.21166 0.96540 0.97552 0.99817 1.20912 0.99614 0.92050 0.99363 1.21027 0.94420 0.99930 1.01117 1.22691 0.95471 1.02742 1.02599 1.22997 0.98147 1.07400 0.95493 0.92614 0.85929 0.93312 0.84733 0.85252 0.85770 0.85569 0.86006 0.91447 0.91083 0.90631 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 10.93 55.43 0.61 -24.05 16 2 C 0.08 2.36 5.11 -17.82 -0.09 2.27 16 3 Si 0.89 22.32 29.57 -169.99 -5.03 17.29 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.49 -14.34 9.01 -34.44 -0.31 -14.65 16 8 H 0.05 1.60 7.86 -52.48 -0.41 1.19 16 9 C 0.06 1.73 2.00 -155.63 -0.31 1.42 16 10 C 0.08 2.09 6.13 -4.04 -0.02 2.06 16 11 N -0.51 -11.94 9.82 -61.65 -0.61 -12.54 16 12 C 0.45 9.86 8.45 -319.47 -2.70 7.16 16 13 N -0.26 -5.91 11.43 30.22 0.35 -5.57 16 14 N 0.09 1.55 13.30 60.35 0.80 2.35 16 15 N -0.35 -4.92 8.21 60.35 0.50 -4.42 16 16 H 0.46 4.02 8.96 -331.83 -2.97 1.04 16 17 N -0.42 -7.06 3.81 -11.09 -0.04 -7.11 16 18 C 0.19 2.84 6.33 -83.72 -0.53 2.31 16 19 C -0.10 -1.43 9.36 -39.38 -0.37 -1.80 16 20 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 21 C -0.13 -1.27 10.04 -39.55 -0.40 -1.67 16 22 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 23 C -0.14 -1.70 9.92 -39.39 -0.39 -2.09 16 24 C -0.20 -4.77 9.73 -26.74 -0.26 -5.03 16 25 C -0.20 -4.94 9.88 -26.70 -0.26 -5.21 16 26 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 27 H 0.12 3.40 4.19 -51.93 -0.22 3.18 16 28 H 0.05 1.22 7.88 -51.93 -0.41 0.81 16 29 H 0.13 2.07 7.84 -52.49 -0.41 1.65 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -33.12 324.16 -11.92 -45.04 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.94 Total: 2.21 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -6.44 Total: -18.09 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 1.60 Total: -51.34 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.12 -11.92 -45.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362356595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.318 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 237.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds