Wall clock time and date at job start Tue Mar 31 2020 05:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47376 * 269.99838 * 3 2 1 5 5 H 1.48502 * 109.46908 * 30.00207 * 3 2 1 6 6 H 1.48499 * 109.47076 * 149.99374 * 3 2 1 7 7 C 1.37869 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00159 * 159.00943 * 7 2 1 9 9 C 1.50703 * 120.00117 * 339.00693 * 7 2 1 10 10 C 1.53001 * 115.54892 * 324.14945 * 9 7 2 11 11 N 1.46495 * 109.47203 * 281.30322 * 10 9 7 12 12 C 1.38027 * 119.99926 * 185.02295 * 11 10 9 13 13 N 1.33082 * 120.85503 * 354.92137 * 12 11 10 14 14 C 1.31872 * 121.08271 * 179.97438 * 13 12 11 15 15 N 1.31761 * 122.70231 * 359.97438 * 14 13 12 16 16 C 1.33055 * 120.73603 * 0.02562 * 15 14 13 17 17 N 1.37343 * 121.10942 * 179.97438 * 16 15 14 18 18 H 0.97006 * 119.67266 * 0.05754 * 17 16 15 19 19 C 1.37652 * 120.64850 * 180.02562 * 17 16 15 20 20 N 1.31212 * 119.71410 * 180.02562 * 19 17 16 21 21 C 1.46191 * 120.56841 * 359.97438 * 19 17 16 22 22 C 1.35438 * 119.56739 * 0.02562 * 21 19 17 23 23 C 1.40616 * 118.70457 * 0.02562 * 16 15 14 24 24 C 1.53004 * 117.51839 * 109.85257 * 9 7 2 25 25 C 1.52994 * 60.00164 * 107.48079 * 24 9 7 26 26 H 0.97005 * 120.00353 * 5.02278 * 1 2 3 27 27 H 1.09001 * 109.46778 * 161.29980 * 10 9 7 28 28 H 1.08997 * 109.46982 * 41.30491 * 10 9 7 29 29 H 0.96998 * 120.00179 * 5.01731 * 11 10 9 30 30 H 1.08004 * 118.64915 * 180.02562 * 14 13 12 31 31 H 0.97000 * 119.99986 * 180.02562 * 20 19 17 32 32 H 1.08000 * 120.21961 * 180.02562 * 21 19 17 33 33 H 1.08004 * 120.53551 * 180.02562 * 22 21 19 34 34 H 1.09000 * 117.49721 * 214.97498 * 24 9 7 35 35 H 1.09002 * 117.49608 * 359.97438 * 24 9 7 36 36 H 1.09001 * 117.50307 * 252.51180 * 25 24 9 37 37 H 1.09006 * 117.51634 * 107.47815 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0044 -1.1940 -0.0005 8 1 3.0307 -1.2249 -0.3356 9 6 1.3259 -2.4560 0.4665 10 6 0.3429 -2.2862 1.6265 11 7 1.0858 -2.1799 2.8846 12 6 0.4063 -2.1242 4.0847 13 7 -0.9229 -2.0645 4.1144 14 6 -1.5767 -2.0116 5.2584 15 7 -0.9680 -2.0147 6.4270 16 6 0.3592 -2.0721 6.5023 17 7 1.0016 -2.0753 7.7162 18 1 0.4822 -2.0359 8.5345 19 6 2.3753 -2.1344 7.7830 20 7 2.9700 -2.1368 8.9526 21 6 3.1771 -2.1955 6.5621 22 6 2.5600 -2.1932 5.3565 23 6 1.1015 -2.1289 5.3094 24 6 0.9975 -3.5141 -0.5888 25 6 2.1326 -3.7548 0.4084 26 1 -0.4851 0.8368 -0.0735 27 1 -0.3217 -3.1491 1.6687 28 1 -0.2457 -1.3815 1.4745 29 1 2.0552 -2.1488 2.8743 30 1 -2.6555 -1.9646 5.2366 31 1 3.9377 -2.1780 9.0045 32 1 4.2544 -2.2421 6.6211 33 1 3.1370 -2.2383 4.4446 34 1 0.0810 -4.0892 -0.4566 35 1 1.2718 -3.2973 -1.6212 36 1 3.1540 -3.6965 0.0321 37 1 1.9632 -4.4882 1.1969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362358296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:22 Heat of formation + Delta-G solvation = 119.216147 kcal Electronic energy + Delta-G solvation = -21859.892954 eV Core-core repulsion = 18638.426531 eV Total energy + Delta-G solvation = -3221.466423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14549 -38.48751 -37.40696 -35.47324 -33.69078 -32.99769 -32.39755 -31.22594 -29.09664 -26.18554 -25.37392 -24.48724 -23.08490 -22.41627 -21.31637 -19.53848 -19.43951 -18.46658 -17.22335 -16.75701 -15.91015 -15.68109 -15.52338 -15.34529 -14.86482 -14.16081 -14.06149 -13.80979 -13.46803 -13.37211 -12.95345 -12.90923 -12.36347 -11.82798 -11.31087 -11.08502 -10.88158 -10.62365 -10.52776 -10.45162 -10.43123 -9.81605 -9.60251 -9.52146 -9.35027 -9.00586 -8.93834 -8.33173 -8.08172 -7.35525 -6.28198 -4.27260 0.69003 1.37883 1.96655 2.58230 3.13668 3.15316 3.24590 3.26481 3.46862 4.19898 4.22866 4.34761 4.46936 4.67143 4.71853 4.78336 5.07528 5.18132 5.35252 5.39208 5.82205 5.85084 6.04297 6.13306 6.13522 6.30081 6.35128 6.47031 6.51641 6.70807 6.78689 6.86018 6.93768 7.15946 7.35372 7.41088 7.63009 7.79862 7.95903 8.19118 8.22177 8.57872 8.67655 9.30422 10.73195 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.005015 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.219883 B = 5581.515936 C = 5813.257622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.145 3.855 11 N -0.659 5.659 12 C 0.492 3.508 13 N -0.593 5.593 14 C 0.390 3.610 15 N -0.615 5.615 16 C 0.460 3.540 17 N -0.596 5.596 18 H 0.422 0.578 19 C 0.445 3.555 20 N -0.781 5.781 21 C -0.233 4.233 22 C 0.004 3.996 23 C -0.309 4.309 24 C -0.189 4.189 25 C -0.211 4.211 26 H 0.267 0.733 27 H 0.042 0.958 28 H 0.126 0.874 29 H 0.410 0.590 30 H 0.198 0.802 31 H 0.351 0.649 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 -4.089 8.878 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.034 3.966 10 C 0.023 3.977 11 N -0.282 5.282 12 C 0.242 3.758 13 N -0.321 5.321 14 C 0.099 3.901 15 N -0.344 5.344 16 C 0.220 3.780 17 N -0.221 5.221 18 H 0.261 0.739 19 C 0.168 3.832 20 N -0.411 5.411 21 C -0.257 4.257 22 C -0.020 4.020 23 C -0.325 4.325 24 C -0.228 4.228 25 C -0.249 4.249 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.144 0.856 29 H 0.248 0.752 30 H 0.215 0.785 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.156 -3.895 9.599 10.360 hybrid contribution 2.269 0.771 -0.528 2.454 sum 2.424 -3.124 9.070 9.895 Atomic orbital electron populations 1.69825 1.06170 1.27461 1.46258 1.24943 0.94614 0.99197 0.93929 0.86701 0.80334 0.83335 0.78461 1.20466 1.20911 1.19602 1.20438 0.98386 0.90174 1.45134 0.91798 1.19175 0.95396 0.88452 0.93528 1.21525 0.93509 1.04001 0.78673 1.45059 1.09450 1.70195 1.03488 1.18439 0.88279 0.83648 0.85482 1.68188 1.06823 1.26495 1.30602 1.24521 1.00307 0.84557 0.80749 1.67983 1.06889 1.28929 1.30622 1.17876 0.88870 0.87055 0.84222 1.41089 1.04466 1.69359 1.07172 0.73914 1.19584 0.83049 0.89672 0.90857 1.69425 1.17915 1.30334 1.23475 1.22733 0.99594 1.12107 0.91267 1.21951 0.91723 0.90135 0.98210 1.19026 0.94667 1.26257 0.92544 1.22937 0.97273 1.06237 0.96313 1.22908 0.96216 1.02809 1.02956 0.92294 0.93956 0.85647 0.75232 0.78538 0.83232 0.83881 0.84685 0.91450 0.90011 0.90422 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.10 11.08 55.43 0.61 -21.48 16 2 C 0.08 1.93 5.06 -17.82 -0.09 1.84 16 3 Si 0.88 19.42 29.59 -169.99 -5.03 14.39 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.50 -12.22 8.98 -34.44 -0.31 -12.53 16 8 H 0.06 1.56 7.90 -52.48 -0.41 1.14 16 9 C 0.04 0.77 1.72 -155.65 -0.27 0.50 16 10 C 0.14 3.02 5.37 -4.04 -0.02 3.00 16 11 N -0.66 -11.91 5.60 -60.05 -0.34 -12.25 16 12 C 0.49 8.55 7.53 -154.74 -1.17 7.39 16 13 N -0.59 -10.33 9.71 -13.59 -0.13 -10.46 16 14 C 0.39 5.71 12.24 -92.12 -1.13 4.58 16 15 N -0.61 -9.23 10.47 -13.82 -0.14 -9.37 16 16 C 0.46 7.03 7.70 -155.49 -1.20 5.83 16 17 N -0.60 -8.19 5.43 -10.21 -0.06 -8.24 16 18 H 0.42 5.28 8.92 -40.82 -0.36 4.92 16 19 C 0.45 6.05 7.92 -154.47 -1.22 4.83 16 20 N -0.78 -10.56 14.16 32.21 0.46 -10.10 16 21 C -0.23 -2.85 10.05 -37.39 -0.38 -3.22 16 22 C 0.00 0.06 9.72 -37.44 -0.36 -0.31 16 23 C -0.31 -4.84 5.89 -104.89 -0.62 -5.46 16 24 C -0.19 -3.89 9.88 -26.73 -0.26 -4.15 16 25 C -0.21 -4.01 9.93 -26.73 -0.27 -4.27 16 26 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 27 H 0.04 0.88 7.96 -51.93 -0.41 0.46 16 28 H 0.13 3.04 5.41 -51.93 -0.28 2.76 16 29 H 0.41 6.85 6.71 -40.82 -0.27 6.58 16 30 H 0.20 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.35 4.06 8.75 -40.82 -0.36 3.70 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.14 1.55 6.65 -52.48 -0.35 1.20 16 34 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -26.95 318.62 -11.24 -38.18 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -4.12 Total: 16.50 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -7.29 Total: -1.97 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: 0.40 Total: -71.91 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.95 -11.24 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362358296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.401 kcal (2) G-P(sol) polarization free energy of solvation -26.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds