Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47376 * 269.99838 * 3 2 1 5 5 H 1.48502 * 109.46908 * 30.00207 * 3 2 1 6 6 H 1.48499 * 109.47076 * 149.99374 * 3 2 1 7 7 C 1.37869 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00159 * 159.00943 * 7 2 1 9 9 C 1.50703 * 120.00117 * 339.00693 * 7 2 1 10 10 C 1.53001 * 115.54892 * 324.14945 * 9 7 2 11 11 N 1.46495 * 109.47203 * 281.30322 * 10 9 7 12 12 C 1.38027 * 119.99926 * 185.02295 * 11 10 9 13 13 N 1.33082 * 120.85503 * 354.92137 * 12 11 10 14 14 C 1.31872 * 121.08271 * 179.97438 * 13 12 11 15 15 N 1.31761 * 122.70231 * 359.97438 * 14 13 12 16 16 C 1.33055 * 120.73603 * 0.02562 * 15 14 13 17 17 N 1.37343 * 121.10942 * 179.97438 * 16 15 14 18 18 H 0.97006 * 119.67266 * 0.05754 * 17 16 15 19 19 C 1.37652 * 120.64850 * 180.02562 * 17 16 15 20 20 N 1.31212 * 119.71410 * 180.02562 * 19 17 16 21 21 C 1.46191 * 120.56841 * 359.97438 * 19 17 16 22 22 C 1.35438 * 119.56739 * 0.02562 * 21 19 17 23 23 C 1.40616 * 118.70457 * 0.02562 * 16 15 14 24 24 C 1.53004 * 117.51839 * 109.85257 * 9 7 2 25 25 C 1.52994 * 60.00164 * 107.48079 * 24 9 7 26 26 H 0.97005 * 120.00353 * 5.02278 * 1 2 3 27 27 H 1.09001 * 109.46778 * 161.29980 * 10 9 7 28 28 H 1.08997 * 109.46982 * 41.30491 * 10 9 7 29 29 H 0.96998 * 120.00179 * 5.01731 * 11 10 9 30 30 H 1.08004 * 118.64915 * 180.02562 * 14 13 12 31 31 H 0.97000 * 119.99986 * 180.02562 * 20 19 17 32 32 H 1.08000 * 120.21961 * 180.02562 * 21 19 17 33 33 H 1.08004 * 120.53551 * 180.02562 * 22 21 19 34 34 H 1.09000 * 117.49721 * 214.97498 * 24 9 7 35 35 H 1.09002 * 117.49608 * 359.97438 * 24 9 7 36 36 H 1.09001 * 117.50307 * 252.51180 * 25 24 9 37 37 H 1.09006 * 117.51634 * 107.47815 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0044 -1.1940 -0.0005 8 1 3.0307 -1.2249 -0.3356 9 6 1.3259 -2.4560 0.4665 10 6 0.3429 -2.2862 1.6265 11 7 1.0858 -2.1799 2.8846 12 6 0.4063 -2.1242 4.0847 13 7 -0.9229 -2.0645 4.1144 14 6 -1.5767 -2.0116 5.2584 15 7 -0.9680 -2.0147 6.4270 16 6 0.3592 -2.0721 6.5023 17 7 1.0016 -2.0753 7.7162 18 1 0.4822 -2.0359 8.5345 19 6 2.3753 -2.1344 7.7830 20 7 2.9700 -2.1368 8.9526 21 6 3.1771 -2.1955 6.5621 22 6 2.5600 -2.1932 5.3565 23 6 1.1015 -2.1289 5.3094 24 6 0.9975 -3.5141 -0.5888 25 6 2.1326 -3.7548 0.4084 26 1 -0.4851 0.8368 -0.0735 27 1 -0.3217 -3.1491 1.6687 28 1 -0.2457 -1.3815 1.4745 29 1 2.0552 -2.1488 2.8743 30 1 -2.6555 -1.9646 5.2366 31 1 3.9377 -2.1780 9.0045 32 1 4.2544 -2.2421 6.6211 33 1 3.1370 -2.2383 4.4446 34 1 0.0810 -4.0892 -0.4566 35 1 1.2718 -3.2973 -1.6212 36 1 3.1540 -3.6965 0.0321 37 1 1.9632 -4.4882 1.1969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362358296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = 105.368381 kcal Electronic energy + Delta-G solvation = -21860.493438 eV Core-core repulsion = 18638.426531 eV Total energy + Delta-G solvation = -3222.066907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31298 -39.66345 -38.89488 -36.80464 -34.81470 -34.24106 -34.13126 -32.45029 -30.27693 -27.85611 -26.96763 -25.64702 -24.22190 -23.61796 -22.87224 -21.16533 -20.57895 -19.71272 -18.43412 -18.29932 -17.19677 -16.85629 -16.75434 -16.65850 -16.46285 -15.71914 -15.27239 -15.15029 -14.71133 -14.56015 -14.38001 -13.97943 -13.82428 -13.54968 -12.91372 -12.86052 -12.38559 -12.25012 -12.05994 -11.69228 -11.59150 -11.27988 -11.22607 -10.88066 -10.62296 -10.56664 -10.25831 -9.99918 -9.36748 -8.56310 -8.12018 -6.15761 -0.41025 0.20062 0.82108 1.38677 1.46120 1.49759 1.52118 2.08511 2.15873 2.39586 2.97058 3.04701 3.27210 3.35811 3.57655 3.63675 3.69919 3.96164 4.08340 4.26688 4.38817 4.53976 4.73186 4.81957 4.84271 4.96399 5.00831 5.10363 5.14716 5.24907 5.32961 5.56503 5.61219 5.63216 5.78410 6.01107 6.14872 6.29330 6.39163 6.69021 6.83813 7.22967 7.38264 7.43075 8.86750 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.005015 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.219883 B = 5581.515936 C = 5813.257622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.041 3.959 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.010 3.990 10 C 0.165 3.835 11 N -0.664 5.664 12 C 0.478 3.522 13 N -0.620 5.620 14 C 0.385 3.615 15 N -0.614 5.614 16 C 0.449 3.551 17 N -0.593 5.593 18 H 0.426 0.574 19 C 0.434 3.566 20 N -0.785 5.785 21 C -0.215 4.215 22 C -0.011 4.011 23 C -0.312 4.312 24 C -0.196 4.196 25 C -0.181 4.181 26 H 0.263 0.737 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.415 0.585 30 H 0.231 0.769 31 H 0.362 0.638 32 H 0.175 0.825 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -4.572 10.134 11.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.161 4.161 3 Si 0.760 3.240 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.010 3.990 10 C 0.042 3.958 11 N -0.289 5.289 12 C 0.229 3.771 13 N -0.349 5.349 14 C 0.095 3.905 15 N -0.342 5.342 16 C 0.208 3.792 17 N -0.219 5.219 18 H 0.266 0.734 19 C 0.157 3.843 20 N -0.417 5.417 21 C -0.238 4.238 22 C -0.035 4.035 23 C -0.327 4.327 24 C -0.235 4.235 25 C -0.218 4.218 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.253 0.747 30 H 0.247 0.753 31 H 0.180 0.820 32 H 0.192 0.808 33 H 0.170 0.830 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.527 -4.385 10.905 11.852 hybrid contribution 1.860 0.888 -0.783 2.205 sum 3.387 -3.498 10.121 11.232 Atomic orbital electron populations 1.69950 1.07161 1.27560 1.47677 1.25470 0.95075 1.01474 0.94117 0.85930 0.79458 0.80430 0.78159 1.20508 1.21706 1.18830 1.20660 0.98149 0.91403 1.44680 0.92344 1.19209 0.96853 0.88633 0.94355 1.21000 0.93131 1.01940 0.79759 1.44762 1.09417 1.71899 1.02831 1.18612 0.88590 0.84146 0.85758 1.68192 1.07322 1.27311 1.32063 1.25182 1.01614 0.83698 0.79982 1.68058 1.06967 1.28521 1.30675 1.18042 0.89081 0.87327 0.84714 1.41090 1.04776 1.69156 1.06838 0.73437 1.19848 0.83040 0.89923 0.91519 1.69399 1.18918 1.29737 1.23683 1.23080 1.00945 1.09632 0.90152 1.22094 0.90631 0.91371 0.99426 1.19181 0.96029 1.25654 0.91840 1.22932 0.98605 1.06086 0.95878 1.22882 0.95833 1.00957 1.02144 0.92731 0.94514 0.89065 0.74658 0.75282 0.81999 0.80780 0.83040 0.90637 0.91004 0.89762 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.38 11.08 21.44 0.24 -46.14 16 2 C 0.04 2.04 5.06 84.65 0.43 2.47 16 3 Si 0.93 39.93 29.59 68.60 2.03 41.96 16 4 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.51 -24.72 8.98 25.60 0.23 -24.49 16 8 H 0.06 2.82 7.90 -2.91 -0.02 2.80 16 9 C 0.01 0.44 1.72 -52.92 -0.09 0.35 16 10 C 0.16 6.94 5.37 86.38 0.46 7.40 16 11 N -0.66 -23.76 5.60 -343.91 -1.92 -25.68 16 12 C 0.48 16.44 7.53 133.60 1.01 17.45 16 13 N -0.62 -21.55 9.71 -196.91 -1.91 -23.46 16 14 C 0.38 10.98 12.24 180.87 2.21 13.19 16 15 N -0.61 -17.76 10.47 -197.63 -2.07 -19.83 16 16 C 0.45 13.18 7.70 133.79 1.03 14.21 16 17 N -0.59 -15.35 5.43 -186.21 -1.01 -16.36 16 18 H 0.43 10.07 8.92 -92.70 -0.83 9.24 16 19 C 0.43 10.77 7.92 135.72 1.07 11.84 16 20 N -0.79 -19.28 14.16 -52.01 -0.74 -20.01 16 21 C -0.21 -4.62 10.05 23.69 0.24 -4.38 16 22 C -0.01 -0.27 9.72 23.65 0.23 -0.04 16 23 C -0.31 -9.40 5.89 -20.04 -0.12 -9.52 16 24 C -0.20 -7.96 9.88 30.59 0.30 -7.65 16 25 C -0.18 -6.53 9.93 30.59 0.30 -6.23 16 26 H 0.26 13.37 8.32 -92.70 -0.77 12.59 16 27 H 0.04 1.54 7.96 -2.39 -0.02 1.52 16 28 H 0.09 4.54 5.41 -2.39 -0.01 4.52 16 29 H 0.41 13.52 6.71 -92.71 -0.62 12.89 16 30 H 0.23 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.36 7.34 8.75 -92.71 -0.81 6.53 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.15 3.13 6.65 -2.91 -0.02 3.11 16 34 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 35 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 37 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -57.06 318.62 0.82 -56.24 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -1.11 Total: 38.68 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 7.31 Total: 14.60 kcal Atomic # 7 Polarization: -144.07 SS G_CDS: -7.42 Total: -151.49 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -57.06 0.82 -56.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362358296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.611 kcal (2) G-P(sol) polarization free energy of solvation -57.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds