Wall clock time and date at job start Tue Mar 31 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99624 * 2 1 4 4 H 1.48506 * 109.47079 * 269.99891 * 3 2 1 5 5 H 1.48494 * 109.47163 * 30.00104 * 3 2 1 6 6 H 1.48503 * 109.46754 * 150.00284 * 3 2 1 7 7 C 1.37874 * 120.00765 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00773 * 172.57274 * 7 2 1 9 9 C 1.50702 * 119.99471 * 352.56449 * 7 2 1 10 10 C 1.52999 * 115.55051 * 84.67091 * 9 7 2 11 11 N 1.46498 * 109.46985 * 39.68080 * 10 9 7 12 12 C 1.38992 * 120.00246 * 179.26804 * 11 10 9 13 13 C 1.39271 * 120.05228 * 359.97438 * 12 11 10 14 14 N 1.31991 * 120.03612 * 180.02562 * 13 12 11 15 15 C 1.32138 * 120.14938 * 0.02562 * 14 13 12 16 16 C 1.38907 * 120.10626 * 359.97438 * 15 14 13 17 17 N 1.39812 * 120.01751 * 179.97438 * 16 15 14 18 18 C 1.35846 * 126.10372 * 180.02562 * 17 16 15 19 19 C 1.35284 * 107.61272 * 179.97438 * 18 17 16 20 20 C 1.39962 * 107.96891 * 359.97438 * 19 18 17 21 21 N 1.30820 * 108.36646 * 359.74182 * 20 19 18 22 22 N 1.32667 * 120.05172 * 180.02562 * 12 11 10 23 23 C 1.53000 * 117.52136 * 230.37256 * 9 7 2 24 24 C 1.53004 * 60.00185 * 107.48124 * 23 9 7 25 25 H 0.97003 * 120.00175 * 5.02804 * 1 2 3 26 26 H 1.08996 * 109.47378 * 279.68067 * 10 9 7 27 27 H 1.09000 * 109.47412 * 159.67136 * 10 9 7 28 28 H 0.97001 * 120.00284 * 359.25904 * 11 10 9 29 29 H 1.08004 * 119.98361 * 359.74483 * 13 12 11 30 30 H 1.07998 * 119.94433 * 179.97438 * 15 14 13 31 31 H 1.07995 * 126.19085 * 359.95269 * 18 17 16 32 32 H 1.07990 * 126.01534 * 180.02562 * 19 18 17 33 33 H 1.07996 * 125.81500 * 180.02562 * 20 19 18 34 34 H 1.08998 * 117.50188 * 214.97243 * 23 9 7 35 35 H 1.09005 * 117.49417 * 359.97438 * 23 9 7 36 36 H 1.08991 * 117.49986 * 252.51356 * 24 23 9 37 37 H 1.08997 * 117.51304 * 107.47992 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0778 -1.1978 -0.1214 9 6 1.2607 -2.4937 0.1678 10 6 0.6703 -3.0868 -1.1131 11 7 1.6156 -2.9030 -2.2171 12 6 1.3034 -3.3776 -3.4856 13 6 0.0924 -4.0285 -3.7083 14 7 -0.2035 -4.4796 -4.9129 15 6 0.6474 -4.3157 -5.9105 16 6 1.8569 -3.6673 -5.6952 17 7 2.7561 -3.4954 -6.7519 18 6 3.9670 -2.8838 -6.6811 19 6 4.5203 -2.9271 -7.9149 20 6 3.6249 -3.5840 -8.7668 21 7 2.5722 -3.9294 -8.0712 22 7 2.1589 -3.2122 -4.4860 23 6 1.7751 -3.4707 1.2269 24 6 0.4774 -2.6963 1.4665 25 1 -0.4850 0.8368 -0.0736 26 1 -0.2665 -2.5821 -1.3490 27 1 0.4834 -4.1508 -0.9683 28 1 2.4593 -2.4500 -2.0629 29 1 -0.6029 -4.1684 -2.8938 30 1 0.4021 -4.6864 -6.8947 31 1 4.4079 -2.4424 -5.7996 32 1 5.4836 -2.5263 -8.1932 33 1 3.7790 -3.7771 -9.8181 34 1 1.6930 -4.5360 1.0112 35 1 2.6522 -3.1736 1.8019 36 1 0.5006 -1.8898 2.1992 37 1 -0.4585 -3.2519 1.4082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362365728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:24 Heat of formation + Delta-G solvation = 166.296240 kcal Electronic energy + Delta-G solvation = -21388.639058 eV Core-core repulsion = 18169.214181 eV Total energy + Delta-G solvation = -3219.424877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60511 -40.41746 -37.36898 -35.02993 -34.44663 -32.16058 -31.88353 -30.42504 -28.82292 -26.26320 -25.52835 -24.49890 -23.18614 -21.30298 -21.08416 -20.79499 -19.51257 -18.23408 -17.45281 -16.49078 -16.14964 -15.71728 -15.67504 -14.89350 -14.66676 -14.34975 -14.30981 -13.67021 -13.49308 -13.14422 -12.87200 -12.64883 -12.52634 -11.75633 -11.32621 -11.29890 -11.13990 -11.09641 -10.94375 -10.70504 -10.61583 -10.32472 -9.79623 -9.37183 -9.09393 -9.02417 -8.70564 -8.62937 -8.31404 -7.32022 -6.24618 -4.33857 0.71787 1.54986 2.03082 2.15187 2.67770 3.16925 3.25655 3.27617 3.52531 4.05863 4.23459 4.35566 4.60617 4.79611 4.85422 4.95216 5.05395 5.13080 5.40326 5.43557 5.62714 5.65656 5.78694 5.83489 6.06518 6.20161 6.29127 6.34626 6.40923 6.55268 6.64611 6.89287 6.95145 7.06207 7.14817 7.29734 7.52396 7.65917 7.84168 7.96954 8.15150 8.36165 8.68225 9.35104 10.82896 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.004380 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.250376 B = 6390.885310 C = 7299.870019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.161 3.839 11 N -0.665 5.665 12 C 0.402 3.598 13 C -0.028 4.028 14 N -0.381 5.381 15 C -0.034 4.034 16 C 0.374 3.626 17 N -0.319 5.319 18 C 0.083 3.917 19 C -0.271 4.271 20 C 0.060 3.940 21 N -0.283 5.283 22 N -0.543 5.543 23 C -0.209 4.209 24 C -0.149 4.149 25 H 0.263 0.737 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.415 0.585 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.192 0.808 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -6.226 -10.112 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.027 3.973 10 C 0.037 3.963 11 N -0.292 5.292 12 C 0.157 3.843 13 C -0.200 4.200 14 N -0.093 5.093 15 C -0.197 4.197 16 C 0.142 3.858 17 N -0.097 5.097 18 C -0.059 4.059 19 C -0.300 4.300 20 C -0.128 4.128 21 N -0.101 5.101 22 N -0.272 5.272 23 C -0.246 4.246 24 C -0.187 4.187 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.255 0.745 29 H 0.187 0.813 30 H 0.186 0.814 31 H 0.200 0.800 32 H 0.172 0.828 33 H 0.209 0.791 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.166 -6.687 -9.775 12.260 hybrid contribution 1.685 1.745 0.124 2.429 sum 4.851 -4.942 -9.652 11.879 Atomic orbital electron populations 1.69943 1.05959 1.27204 1.47422 1.24959 0.94779 0.99005 0.93809 0.86642 0.80080 0.83379 0.78311 1.20577 1.21028 1.19651 1.20281 0.93120 0.88518 1.52568 0.92044 1.18924 0.98612 0.94207 0.85528 1.21161 0.91891 0.97015 0.86234 1.45007 1.23176 1.57579 1.03436 1.19145 0.89258 0.89499 0.86370 1.23121 0.96958 1.03751 0.96173 1.68221 1.29536 1.12490 0.99050 1.22666 0.90946 1.05920 1.00212 1.18350 0.88217 0.94299 0.84915 1.45797 1.13554 1.43864 1.06507 1.23015 0.86079 0.96299 1.00477 1.21635 1.03759 1.11960 0.92621 1.24135 0.91352 0.96889 1.00466 1.77450 1.23691 1.22397 0.86610 1.66948 1.35038 1.26781 0.98426 1.23106 0.98489 0.95607 1.07405 1.22525 0.92619 1.01187 1.02373 0.92685 0.91011 0.93977 0.74550 0.81267 0.81422 0.80041 0.82762 0.79123 0.91458 0.90241 0.89757 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.63 12.98 55.43 0.72 -21.91 16 2 C 0.08 2.00 5.38 -17.82 -0.10 1.90 16 3 Si 0.89 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.51 -12.22 7.41 -34.44 -0.26 -12.47 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.03 0.60 1.71 -155.66 -0.27 0.33 16 10 C 0.16 3.09 4.98 -4.04 -0.02 3.07 16 11 N -0.66 -12.54 5.52 -60.32 -0.33 -12.88 16 12 C 0.40 7.32 7.66 -154.75 -1.19 6.13 16 13 C -0.03 -0.49 10.48 -17.10 -0.18 -0.67 16 14 N -0.38 -6.53 10.48 -12.73 -0.13 -6.66 16 15 C -0.03 -0.57 10.83 -17.17 -0.19 -0.76 16 16 C 0.37 6.40 7.55 -154.07 -1.16 5.23 16 17 N -0.32 -4.94 3.81 -12.03 -0.05 -4.98 16 18 C 0.08 1.11 11.12 -16.83 -0.19 0.92 16 19 C -0.27 -2.91 10.80 -39.99 -0.43 -3.34 16 20 C 0.06 0.65 12.02 -17.34 -0.21 0.44 16 21 N -0.28 -4.00 11.85 30.64 0.36 -3.63 16 22 N -0.54 -9.80 10.06 -11.28 -0.11 -9.92 16 23 C -0.21 -4.02 9.88 -26.73 -0.26 -4.28 16 24 C -0.15 -3.09 9.52 -26.73 -0.25 -3.34 16 25 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 26 H 0.07 1.50 7.98 -51.93 -0.41 1.08 16 27 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 28 H 0.42 8.21 7.54 -40.82 -0.31 7.90 16 29 H 0.17 2.61 6.72 -52.48 -0.35 2.26 16 30 H 0.17 2.51 7.69 -52.49 -0.40 2.11 16 31 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -27.24 325.35 -8.74 -35.98 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -4.38 Total: 11.11 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -4.70 Total: -6.83 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.46 Total: -59.98 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.24 -8.74 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362365728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.279 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds