Wall clock time and date at job start Tue Mar 31 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99624 * 2 1 4 4 H 1.48506 * 109.47079 * 269.99891 * 3 2 1 5 5 H 1.48494 * 109.47163 * 30.00104 * 3 2 1 6 6 H 1.48503 * 109.46754 * 150.00284 * 3 2 1 7 7 C 1.37874 * 120.00765 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00773 * 172.57274 * 7 2 1 9 9 C 1.50702 * 119.99471 * 352.56449 * 7 2 1 10 10 C 1.52999 * 115.55051 * 84.67091 * 9 7 2 11 11 N 1.46498 * 109.46985 * 39.68080 * 10 9 7 12 12 C 1.38992 * 120.00246 * 179.26804 * 11 10 9 13 13 C 1.39271 * 120.05228 * 359.97438 * 12 11 10 14 14 N 1.31991 * 120.03612 * 180.02562 * 13 12 11 15 15 C 1.32138 * 120.14938 * 0.02562 * 14 13 12 16 16 C 1.38907 * 120.10626 * 359.97438 * 15 14 13 17 17 N 1.39812 * 120.01751 * 179.97438 * 16 15 14 18 18 C 1.35846 * 126.10372 * 180.02562 * 17 16 15 19 19 C 1.35284 * 107.61272 * 179.97438 * 18 17 16 20 20 C 1.39962 * 107.96891 * 359.97438 * 19 18 17 21 21 N 1.30820 * 108.36646 * 359.74182 * 20 19 18 22 22 N 1.32667 * 120.05172 * 180.02562 * 12 11 10 23 23 C 1.53000 * 117.52136 * 230.37256 * 9 7 2 24 24 C 1.53004 * 60.00185 * 107.48124 * 23 9 7 25 25 H 0.97003 * 120.00175 * 5.02804 * 1 2 3 26 26 H 1.08996 * 109.47378 * 279.68067 * 10 9 7 27 27 H 1.09000 * 109.47412 * 159.67136 * 10 9 7 28 28 H 0.97001 * 120.00284 * 359.25904 * 11 10 9 29 29 H 1.08004 * 119.98361 * 359.74483 * 13 12 11 30 30 H 1.07998 * 119.94433 * 179.97438 * 15 14 13 31 31 H 1.07995 * 126.19085 * 359.95269 * 18 17 16 32 32 H 1.07990 * 126.01534 * 180.02562 * 19 18 17 33 33 H 1.07996 * 125.81500 * 180.02562 * 20 19 18 34 34 H 1.08998 * 117.50188 * 214.97243 * 23 9 7 35 35 H 1.09005 * 117.49417 * 359.97438 * 23 9 7 36 36 H 1.08991 * 117.49986 * 252.51356 * 24 23 9 37 37 H 1.08997 * 117.51304 * 107.47992 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0778 -1.1978 -0.1214 9 6 1.2607 -2.4937 0.1678 10 6 0.6703 -3.0868 -1.1131 11 7 1.6156 -2.9030 -2.2171 12 6 1.3034 -3.3776 -3.4856 13 6 0.0924 -4.0285 -3.7083 14 7 -0.2035 -4.4796 -4.9129 15 6 0.6474 -4.3157 -5.9105 16 6 1.8569 -3.6673 -5.6952 17 7 2.7561 -3.4954 -6.7519 18 6 3.9670 -2.8838 -6.6811 19 6 4.5203 -2.9271 -7.9149 20 6 3.6249 -3.5840 -8.7668 21 7 2.5722 -3.9294 -8.0712 22 7 2.1589 -3.2122 -4.4860 23 6 1.7751 -3.4707 1.2269 24 6 0.4774 -2.6963 1.4665 25 1 -0.4850 0.8368 -0.0736 26 1 -0.2665 -2.5821 -1.3490 27 1 0.4834 -4.1508 -0.9683 28 1 2.4593 -2.4500 -2.0629 29 1 -0.6029 -4.1684 -2.8938 30 1 0.4021 -4.6864 -6.8947 31 1 4.4079 -2.4424 -5.7996 32 1 5.4836 -2.5263 -8.1932 33 1 3.7790 -3.7771 -9.8181 34 1 1.6930 -4.5360 1.0112 35 1 2.6522 -3.1736 1.8019 36 1 0.5006 -1.8898 2.1992 37 1 -0.4585 -3.2519 1.4082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362365728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:23 Heat of formation + Delta-G solvation = 151.685237 kcal Electronic energy + Delta-G solvation = -21389.272639 eV Core-core repulsion = 18169.214181 eV Total energy + Delta-G solvation = -3220.058457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.69730 -41.62402 -38.94521 -36.47475 -35.68244 -34.03069 -33.12160 -31.41494 -30.04806 -27.87023 -27.20900 -25.76143 -24.43631 -22.89037 -22.18521 -21.84932 -21.16104 -19.37407 -18.84239 -17.92027 -17.68622 -17.05131 -16.89159 -16.66414 -16.01229 -15.64293 -15.53182 -15.00683 -14.67623 -14.51946 -14.23044 -13.87774 -13.73048 -13.50758 -12.98717 -12.91146 -12.66610 -12.59046 -12.39420 -12.07251 -11.89834 -11.81224 -11.47652 -10.85370 -10.50164 -10.44536 -10.34442 -10.01861 -9.70838 -8.68858 -8.14629 -6.25672 -0.48490 0.19701 0.92946 1.06413 1.37105 1.42373 1.48345 1.83099 2.14750 2.39202 2.73935 3.14172 3.22573 3.33638 3.47782 3.62655 3.71427 4.05197 4.16256 4.22375 4.39994 4.51652 4.52579 4.65707 4.69290 4.70537 4.95965 5.03402 5.04847 5.16703 5.28605 5.44744 5.54933 5.65719 5.73831 5.81151 5.90705 6.31197 6.40285 6.52711 6.62517 6.80824 6.94664 7.44175 8.91910 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.004380 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.250376 B = 6390.885310 C = 7299.870019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.039 3.961 3 Si 0.936 3.064 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.003 3.997 10 C 0.174 3.826 11 N -0.671 5.671 12 C 0.393 3.607 13 C -0.035 4.035 14 N -0.386 5.386 15 C -0.035 4.035 16 C 0.371 3.629 17 N -0.339 5.339 18 C 0.054 3.946 19 C -0.252 4.252 20 C 0.073 3.927 21 N -0.314 5.314 22 N -0.555 5.555 23 C -0.185 4.185 24 C -0.154 4.154 25 H 0.259 0.741 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.409 0.591 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.183 0.817 32 H 0.189 0.811 33 H 0.236 0.764 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -7.063 -11.732 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.003 3.997 10 C 0.051 3.949 11 N -0.299 5.299 12 C 0.148 3.852 13 C -0.205 4.205 14 N -0.099 5.099 15 C -0.199 4.199 16 C 0.138 3.862 17 N -0.118 5.118 18 C -0.086 4.086 19 C -0.279 4.279 20 C -0.115 4.115 21 N -0.132 5.132 22 N -0.285 5.285 23 C -0.222 4.222 24 C -0.192 4.192 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.247 0.753 29 H 0.200 0.800 30 H 0.199 0.801 31 H 0.200 0.800 32 H 0.206 0.794 33 H 0.252 0.748 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.403 -7.530 -11.405 14.358 hybrid contribution 1.437 1.979 0.450 2.487 sum 5.840 -5.551 -10.954 13.599 Atomic orbital electron populations 1.70029 1.06820 1.27262 1.49201 1.25491 0.95322 1.01280 0.94207 0.85892 0.79190 0.80783 0.77785 1.21008 1.21385 1.19248 1.20525 0.93011 0.89869 1.51124 0.92700 1.19033 0.99608 0.94278 0.86832 1.20950 0.90775 0.98004 0.85209 1.44864 1.22833 1.58398 1.03771 1.19248 0.89789 0.89918 0.86204 1.23292 0.96874 1.03762 0.96611 1.68243 1.29777 1.12672 0.99189 1.22906 0.90801 1.05560 1.00587 1.18531 0.88835 0.93753 0.85057 1.45886 1.14018 1.45284 1.06616 1.23357 0.86039 0.97308 1.01923 1.22092 1.04534 1.10039 0.91264 1.24970 0.89866 0.94635 1.02047 1.77453 1.25588 1.23821 0.86348 1.66943 1.35379 1.27227 0.98910 1.23106 0.97312 0.96611 1.05214 1.22457 0.94187 1.01189 1.01402 0.93159 0.93117 0.91389 0.75347 0.79954 0.80121 0.80033 0.79368 0.74784 0.88703 0.90561 0.92228 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.41 12.98 21.45 0.28 -47.13 16 2 C 0.04 1.98 5.38 84.65 0.46 2.43 16 3 Si 0.94 41.21 29.55 68.60 2.03 43.23 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.51 -24.56 7.41 25.60 0.19 -24.37 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 9 C 0.00 0.14 1.71 -52.93 -0.09 0.05 16 10 C 0.17 6.63 4.98 86.38 0.43 7.06 16 11 N -0.67 -25.36 5.52 -344.77 -1.90 -27.27 16 12 C 0.39 14.30 7.66 133.02 1.02 15.32 16 13 C -0.03 -1.18 10.48 84.92 0.89 -0.29 16 14 N -0.39 -13.08 10.48 -194.17 -2.04 -15.11 16 15 C -0.04 -1.15 10.83 84.81 0.92 -0.23 16 16 C 0.37 12.61 7.55 132.64 1.00 13.61 16 17 N -0.34 -10.21 3.81 -191.99 -0.73 -10.94 16 18 C 0.05 1.36 11.12 83.39 0.93 2.29 16 19 C -0.25 -4.60 10.80 22.01 0.24 -4.36 16 20 C 0.07 1.33 12.02 85.26 1.02 2.36 16 21 N -0.31 -8.30 11.85 -56.97 -0.68 -8.97 16 22 N -0.55 -20.14 10.06 -189.61 -1.91 -22.05 16 23 C -0.19 -6.83 9.88 30.60 0.30 -6.53 16 24 C -0.15 -6.32 9.52 30.60 0.29 -6.02 16 25 H 0.26 13.41 8.32 -92.71 -0.77 12.64 16 26 H 0.05 2.13 7.98 -2.39 -0.02 2.11 16 27 H 0.07 2.20 7.70 -2.39 -0.02 2.18 16 28 H 0.41 16.34 7.54 -92.71 -0.70 15.64 16 29 H 0.18 5.52 6.72 -2.91 -0.02 5.50 16 30 H 0.18 5.29 7.69 -2.91 -0.02 5.27 16 31 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.19 2.08 8.06 -2.92 -0.02 2.05 16 33 H 0.24 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.09 2.98 8.08 -2.39 -0.02 2.96 16 35 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 36 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -58.81 325.35 3.05 -55.76 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.40 Total: 31.18 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 7.60 Total: 1.30 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -6.97 Total: -131.47 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -58.81 3.05 -55.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362365728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.447 kcal (2) G-P(sol) polarization free energy of solvation -58.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds