Wall clock time and date at job start Tue Mar 31 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48505 * 109.46863 * 264.98970 * 3 2 1 5 5 H 1.48504 * 109.47029 * 144.99395 * 3 2 1 6 6 H 1.48494 * 109.47232 * 24.99266 * 3 2 1 7 7 C 1.40048 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00149 * 186.80590 * 7 2 1 9 9 C 1.46381 * 119.99975 * 6.80611 * 7 2 1 10 10 O 1.21690 * 119.99764 * 6.73966 * 9 7 2 11 11 N 1.34776 * 120.00087 * 186.74861 * 9 7 2 12 12 C 1.49152 * 137.97239 * 359.61136 * 11 9 7 13 13 C 1.50076 * 85.22207 * 219.14039 * 12 11 9 14 14 H 1.09005 * 114.29018 * 76.31038 * 13 12 11 15 15 C 1.51852 * 124.12895 * 221.85516 * 13 12 11 16 16 C 1.53947 * 106.25191 * 153.23980 * 15 13 12 17 17 C 1.52373 * 112.55613 * 303.14618 * 16 15 13 18 18 C 1.54251 * 112.10875 * 53.55578 * 17 16 15 19 19 C 1.43132 * 137.97269 * 179.97438 * 11 9 7 20 20 C 1.50699 * 111.99654 * 252.75485 * 19 11 9 21 21 C 1.38233 * 119.99985 * 26.03656 * 20 19 11 22 22 C 1.38237 * 119.99780 * 179.76789 * 21 20 19 23 23 C 1.38233 * 120.00091 * 0.47785 * 22 21 20 24 24 C 1.38230 * 120.00042 * 359.80027 * 23 22 21 25 25 C 1.38237 * 119.99964 * 206.30799 * 20 19 11 26 26 H 0.96998 * 119.99744 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.93680 * 333.08335 * 12 11 9 28 28 H 1.08998 * 113.93173 * 105.01282 * 12 11 9 29 29 H 1.09007 * 110.08611 * 34.06024 * 15 13 12 30 30 H 1.08990 * 110.18928 * 272.47805 * 15 13 12 31 31 H 1.09006 * 108.86443 * 182.35808 * 16 15 13 32 32 H 1.08998 * 108.86366 * 63.94361 * 16 15 13 33 33 H 1.08994 * 108.95632 * 292.87275 * 17 16 15 34 34 H 1.09008 * 108.94903 * 174.22925 * 17 16 15 35 35 H 1.09004 * 110.18677 * 184.21030 * 18 17 16 36 36 H 1.09002 * 110.29746 * 62.38901 * 18 17 16 37 37 H 1.08004 * 120.00228 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.99998 * 180.25126 * 22 21 20 39 39 H 1.08005 * 119.99771 * 179.77092 * 23 22 21 40 40 H 1.07997 * 120.00001 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.99924 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5941 1.9852 -1.3948 5 1 3.4814 1.4729 0.8032 6 1 1.3894 2.6809 0.5915 7 6 2.0069 -1.2129 0.0005 8 1 3.0812 -1.2161 0.1114 9 6 1.2827 -2.4762 -0.1491 10 8 0.0912 -2.4688 -0.3964 11 7 1.9355 -3.6474 -0.0129 12 6 3.3232 -4.1161 0.2686 13 6 3.0352 -5.1817 -0.7482 14 1 3.0695 -4.8364 -1.7815 15 6 3.4388 -6.6375 -0.5943 16 6 2.4296 -7.4541 -1.4218 17 6 0.9881 -7.2086 -0.9935 18 6 0.6301 -5.7082 -0.9932 19 6 1.6350 -5.0455 -0.0741 20 6 1.6419 -5.6845 1.2907 21 6 1.3790 -4.9211 2.4127 22 6 1.3805 -5.5083 3.6641 23 6 1.6548 -6.8568 3.7945 24 6 1.9233 -7.6191 2.6731 25 6 1.9166 -7.0330 1.4211 26 1 -0.4850 0.8400 -0.0004 27 1 4.0981 -3.4136 -0.0381 28 1 3.4648 -4.4963 1.2803 29 1 3.3879 -6.9313 0.4542 30 1 4.4477 -6.7906 -0.9771 31 1 2.6557 -8.5143 -1.3070 32 1 2.5358 -7.1849 -2.4727 33 1 0.8444 -7.6071 0.0108 34 1 0.3212 -7.7316 -1.6789 35 1 -0.3808 -5.5628 -0.6120 36 1 0.7141 -5.2992 -2.0001 37 1 1.1690 -3.8665 2.3113 38 1 1.1711 -4.9126 4.5404 39 1 1.6596 -7.3148 4.7726 40 1 2.1380 -8.6726 2.7750 41 1 2.1268 -7.6284 0.5449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372240675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:04 Heat of formation + Delta-G solvation = 98.605291 kcal Electronic energy + Delta-G solvation = -23594.696102 eV Core-core repulsion = 20443.583518 eV Total energy + Delta-G solvation = -3151.112584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18702 -37.94398 -36.55311 -35.10957 -32.50719 -31.15102 -30.37096 -30.06688 -28.32614 -26.02535 -25.28541 -23.17310 -22.44797 -21.36202 -20.39009 -19.80455 -18.56790 -16.71476 -16.02299 -15.58340 -15.38969 -15.09108 -14.83831 -14.34112 -13.96103 -13.69289 -13.51720 -13.06011 -12.54004 -12.46652 -12.26600 -12.19059 -11.94367 -11.73028 -11.51494 -11.44911 -11.16143 -10.99281 -10.78601 -10.71028 -10.63185 -10.44886 -10.28262 -10.12284 -9.45245 -9.19429 -8.87382 -8.44399 -8.15321 -7.67225 -7.25784 -6.26194 -4.66247 1.65057 1.72346 3.12800 3.19123 3.21848 3.92590 4.05801 4.25578 4.47315 4.71534 4.91432 5.02577 5.16625 5.23072 5.26279 5.37130 5.48217 5.49352 5.63133 5.71872 5.73972 5.85503 5.91396 5.93721 5.96057 5.98532 6.16737 6.19379 6.26987 6.28583 6.31977 6.43485 6.45270 6.53713 6.58876 6.70706 6.80375 6.82825 6.94588 7.10476 7.34890 7.41183 8.10268 8.50067 8.98964 9.57835 10.54012 10.73087 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.005860 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.435353 B = 4777.215706 C = 5337.998797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.089 3.911 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.588 3.412 10 O -0.570 6.570 11 N -0.640 5.640 12 C 0.116 3.884 13 C -0.132 4.132 14 H 0.099 0.901 15 C -0.142 4.142 16 C -0.119 4.119 17 C -0.145 4.145 18 C -0.093 4.093 19 C 0.180 3.820 20 C -0.071 4.071 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.146 4.146 26 H 0.270 0.730 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -14.494 2.493 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.397 3.603 10 O -0.452 6.452 11 N -0.378 5.378 12 C -0.007 4.007 13 C -0.151 4.151 14 H 0.117 0.883 15 C -0.179 4.179 16 C -0.157 4.157 17 C -0.182 4.182 18 C -0.131 4.131 19 C 0.091 3.909 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.164 4.164 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.845 -14.079 2.316 15.419 hybrid contribution 0.359 0.970 0.137 1.043 sum 6.204 -13.110 2.453 14.709 Atomic orbital electron populations 1.69979 1.07118 1.27572 1.35242 1.25696 0.94606 1.00269 0.92519 0.86367 0.80055 0.81148 0.79104 1.19551 1.18936 1.20468 1.20770 0.94252 0.88866 1.53456 0.91346 1.17975 0.85777 0.80213 0.76374 1.90624 1.15452 1.85197 1.53925 1.49935 1.09562 1.02429 1.75908 1.22337 0.87126 0.93930 0.97328 1.23281 0.98038 0.94148 0.99650 0.88294 1.22334 0.98134 0.94886 1.02532 1.21473 0.94625 0.99177 1.00389 1.22303 0.95982 0.96788 1.03133 1.21320 0.98936 0.93674 0.99173 1.19886 0.95845 0.85007 0.90140 1.20159 0.98142 0.93521 0.95437 1.21232 0.97479 1.00924 0.91742 1.21119 1.00942 0.95017 0.97357 1.21054 1.01133 0.94281 0.98262 1.21075 1.02244 0.99343 0.92838 1.22162 1.00166 0.95343 0.98687 0.91932 0.91259 0.90734 0.88255 0.92076 0.92130 0.91883 0.89308 0.92210 0.91621 0.91170 0.85463 0.86580 0.86876 0.86611 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.15 11.91 55.55 0.66 -22.49 16 2 C 0.09 2.49 5.48 -17.37 -0.10 2.39 16 3 Si 0.91 20.29 29.56 -169.99 -5.03 15.26 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.32 9.46 -35.63 -0.34 -15.66 16 8 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 9 C 0.59 16.99 7.81 -12.98 -0.10 16.89 16 10 O -0.57 -18.71 15.92 5.20 0.08 -18.63 16 11 N -0.64 -14.80 2.47 -235.89 -0.58 -15.38 16 12 C 0.12 2.14 7.87 -24.25 -0.19 1.95 16 13 C -0.13 -2.13 3.67 -91.58 -0.34 -2.47 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 15 C -0.14 -1.75 5.65 -26.82 -0.15 -1.90 16 16 C -0.12 -1.35 4.92 -26.56 -0.13 -1.48 16 17 C -0.14 -1.90 5.34 -26.40 -0.14 -2.04 16 18 C -0.09 -1.66 5.83 -26.85 -0.16 -1.82 16 19 C 0.18 3.41 1.87 -154.15 -0.29 3.12 16 20 C -0.07 -1.22 3.26 -104.63 -0.34 -1.56 16 21 C -0.10 -1.78 8.39 -39.58 -0.33 -2.11 16 22 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 24 C -0.14 -1.72 10.05 -39.58 -0.40 -2.12 16 25 C -0.15 -2.03 4.81 -39.58 -0.19 -2.22 16 26 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.31 5.91 -51.93 -0.31 1.01 16 29 H 0.10 1.23 3.86 -56.94 -0.22 1.01 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.14 4.32 -51.93 -0.22 0.92 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 37 H 0.13 2.84 7.28 -52.48 -0.38 2.45 16 38 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.17 1.98 2.52 -52.49 -0.13 1.85 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -33.77 315.02 -9.56 -43.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.46 Total: 6.65 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.99 Total: -13.49 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.08 Total: -37.87 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.08 Total: -18.63 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.77 -9.56 -43.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.944 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds