Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48505 * 109.46863 * 264.98970 * 3 2 1 5 5 H 1.48504 * 109.47029 * 144.99395 * 3 2 1 6 6 H 1.48494 * 109.47232 * 24.99266 * 3 2 1 7 7 C 1.40048 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00149 * 186.80590 * 7 2 1 9 9 C 1.46381 * 119.99975 * 6.80611 * 7 2 1 10 10 O 1.21690 * 119.99764 * 6.73966 * 9 7 2 11 11 N 1.34776 * 120.00087 * 186.74861 * 9 7 2 12 12 C 1.49152 * 137.97239 * 359.61136 * 11 9 7 13 13 C 1.50076 * 85.22207 * 219.14039 * 12 11 9 14 14 H 1.09005 * 114.29018 * 76.31038 * 13 12 11 15 15 C 1.51852 * 124.12895 * 221.85516 * 13 12 11 16 16 C 1.53947 * 106.25191 * 153.23980 * 15 13 12 17 17 C 1.52373 * 112.55613 * 303.14618 * 16 15 13 18 18 C 1.54251 * 112.10875 * 53.55578 * 17 16 15 19 19 C 1.43132 * 137.97269 * 179.97438 * 11 9 7 20 20 C 1.50699 * 111.99654 * 252.75485 * 19 11 9 21 21 C 1.38233 * 119.99985 * 26.03656 * 20 19 11 22 22 C 1.38237 * 119.99780 * 179.76789 * 21 20 19 23 23 C 1.38233 * 120.00091 * 0.47785 * 22 21 20 24 24 C 1.38230 * 120.00042 * 359.80027 * 23 22 21 25 25 C 1.38237 * 119.99964 * 206.30799 * 20 19 11 26 26 H 0.96998 * 119.99744 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.93680 * 333.08335 * 12 11 9 28 28 H 1.08998 * 113.93173 * 105.01282 * 12 11 9 29 29 H 1.09007 * 110.08611 * 34.06024 * 15 13 12 30 30 H 1.08990 * 110.18928 * 272.47805 * 15 13 12 31 31 H 1.09006 * 108.86443 * 182.35808 * 16 15 13 32 32 H 1.08998 * 108.86366 * 63.94361 * 16 15 13 33 33 H 1.08994 * 108.95632 * 292.87275 * 17 16 15 34 34 H 1.09008 * 108.94903 * 174.22925 * 17 16 15 35 35 H 1.09004 * 110.18677 * 184.21030 * 18 17 16 36 36 H 1.09002 * 110.29746 * 62.38901 * 18 17 16 37 37 H 1.08004 * 120.00228 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.99998 * 180.25126 * 22 21 20 39 39 H 1.08005 * 119.99771 * 179.77092 * 23 22 21 40 40 H 1.07997 * 120.00001 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.99924 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5941 1.9852 -1.3948 5 1 3.4814 1.4729 0.8032 6 1 1.3894 2.6809 0.5915 7 6 2.0069 -1.2129 0.0005 8 1 3.0812 -1.2161 0.1114 9 6 1.2827 -2.4762 -0.1491 10 8 0.0912 -2.4688 -0.3964 11 7 1.9355 -3.6474 -0.0129 12 6 3.3232 -4.1161 0.2686 13 6 3.0352 -5.1817 -0.7482 14 1 3.0695 -4.8364 -1.7815 15 6 3.4388 -6.6375 -0.5943 16 6 2.4296 -7.4541 -1.4218 17 6 0.9881 -7.2086 -0.9935 18 6 0.6301 -5.7082 -0.9932 19 6 1.6350 -5.0455 -0.0741 20 6 1.6419 -5.6845 1.2907 21 6 1.3790 -4.9211 2.4127 22 6 1.3805 -5.5083 3.6641 23 6 1.6548 -6.8568 3.7945 24 6 1.9233 -7.6191 2.6731 25 6 1.9166 -7.0330 1.4211 26 1 -0.4850 0.8400 -0.0004 27 1 4.0981 -3.4136 -0.0381 28 1 3.4648 -4.4963 1.2803 29 1 3.3879 -6.9313 0.4542 30 1 4.4477 -6.7906 -0.9771 31 1 2.6557 -8.5143 -1.3070 32 1 2.5358 -7.1849 -2.4727 33 1 0.8444 -7.6071 0.0108 34 1 0.3212 -7.7316 -1.6789 35 1 -0.3808 -5.5628 -0.6120 36 1 0.7141 -5.2992 -2.0001 37 1 1.1690 -3.8665 2.3113 38 1 1.1711 -4.9126 4.5404 39 1 1.6596 -7.3148 4.7726 40 1 2.1380 -8.6726 2.7750 41 1 2.1268 -7.6284 0.5449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372240675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = 77.196873 kcal Electronic energy + Delta-G solvation = -23595.624441 eV Core-core repulsion = 20443.583518 eV Total energy + Delta-G solvation = -3152.040923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.56819 -39.35611 -38.32345 -36.66772 -34.70971 -32.40045 -31.53364 -31.40546 -30.04147 -27.98449 -26.71706 -24.53375 -23.63953 -22.81215 -21.79585 -21.03402 -20.20267 -18.60002 -17.68890 -17.13267 -16.63648 -16.60388 -16.32529 -15.83398 -15.47016 -15.03110 -14.95644 -14.59381 -14.21711 -13.89846 -13.54399 -13.45873 -13.41083 -13.31696 -13.00115 -12.95945 -12.76925 -12.64448 -12.37237 -12.06439 -12.01586 -11.91585 -11.83710 -11.49707 -11.00129 -10.60089 -10.51458 -9.91775 -9.61849 -9.35935 -9.12641 -8.39635 -6.91495 0.47670 0.52613 1.32001 1.35305 1.49479 2.14551 2.35887 2.52936 2.86993 3.28413 3.45674 3.79282 3.92438 4.06042 4.06379 4.09385 4.21726 4.29578 4.33001 4.39454 4.47964 4.60894 4.65058 4.67232 4.69593 4.76848 4.90463 4.91280 5.08752 5.11681 5.19155 5.21618 5.23393 5.28028 5.29339 5.36668 5.42076 5.59240 5.65259 5.69445 5.81198 5.94194 6.18050 6.47830 6.79151 7.58430 8.40033 8.60210 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.005860 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.435353 B = 4777.215706 C = 5337.998797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.249 1.249 6 H -0.269 1.269 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.573 3.427 10 O -0.632 6.632 11 N -0.661 5.661 12 C 0.117 3.883 13 C -0.106 4.106 14 H 0.084 0.916 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.134 4.134 18 C -0.098 4.098 19 C 0.154 3.846 20 C -0.083 4.083 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.139 4.139 26 H 0.276 0.724 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.938 -18.157 3.196 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.184 1.184 5 H -0.173 1.173 6 H -0.193 1.193 7 C -0.604 4.604 8 H 0.098 0.902 9 C 0.381 3.619 10 O -0.519 6.519 11 N -0.397 5.397 12 C -0.005 4.005 13 C -0.125 4.125 14 H 0.103 0.897 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.171 4.171 18 C -0.136 4.136 19 C 0.067 3.933 20 C -0.085 4.085 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.155 4.155 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.168 0.832 40 H 0.182 0.818 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.980 -17.809 3.031 20.174 hybrid contribution -0.640 2.010 -0.027 2.110 sum 8.340 -15.799 3.004 18.116 Atomic orbital electron populations 1.70155 1.09639 1.29190 1.36486 1.27003 0.95530 1.04934 0.91015 0.85019 0.78651 0.74746 0.79788 1.18366 1.17260 1.19331 1.21257 0.94948 0.89960 1.54227 0.90227 1.18221 0.85315 0.82356 0.76045 1.90544 1.17827 1.86944 1.56606 1.49742 1.12168 1.03294 1.74495 1.22524 0.84478 0.94607 0.98848 1.23083 0.95264 0.96439 0.97750 0.89725 1.22364 1.00078 0.90924 1.03549 1.21523 0.92256 1.01567 1.00134 1.22282 0.98247 0.92211 1.04393 1.21389 0.96907 0.97909 0.97402 1.20366 0.98133 0.82543 0.92287 1.19987 0.99993 0.95201 0.93325 1.20938 1.01418 0.98600 0.94342 1.21238 1.01224 0.96793 0.96012 1.21465 0.99134 0.92723 1.00543 1.21628 0.99277 1.01387 0.91444 1.22411 0.99053 0.93339 1.00713 0.91391 0.91311 0.89646 0.87443 0.89049 0.87517 0.91735 0.88325 0.90415 0.95506 0.93513 0.91399 0.86153 0.83247 0.81775 0.78914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -53.08 11.91 21.84 0.26 -52.82 16 2 C 0.03 1.76 5.48 85.31 0.47 2.23 16 3 Si 1.00 43.13 29.56 68.60 2.03 45.16 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.57 -34.64 9.46 24.83 0.24 -34.41 16 8 H 0.08 4.47 7.86 -2.91 -0.02 4.45 16 9 C 0.57 36.21 7.81 86.36 0.67 36.89 16 10 O -0.63 -45.80 15.92 -4.32 -0.07 -45.87 16 11 N -0.66 -33.16 2.47 ******* -2.51 -35.67 16 12 C 0.12 4.49 7.87 71.82 0.57 5.05 16 13 C -0.11 -3.40 3.67 -10.89 -0.04 -3.44 16 14 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 15 C -0.13 -2.71 5.65 30.54 0.17 -2.54 16 16 C -0.12 -2.10 4.92 30.71 0.15 -1.95 16 17 C -0.13 -3.20 5.34 30.81 0.16 -3.04 16 18 C -0.10 -3.71 5.83 30.51 0.18 -3.53 16 19 C 0.15 6.14 1.87 -9.09 -0.02 6.13 16 20 C -0.08 -2.90 3.26 -19.87 -0.06 -2.97 16 21 C -0.13 -5.35 8.39 22.27 0.19 -5.16 16 22 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 23 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 24 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 25 C -0.14 -3.33 4.81 22.27 0.11 -3.22 16 26 H 0.28 16.02 8.29 -92.71 -0.77 15.25 16 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.09 3.08 5.91 -2.39 -0.01 3.07 16 29 H 0.11 2.10 3.86 -7.09 -0.03 2.07 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 2.18 4.32 -2.39 -0.01 2.17 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.05 1.91 8.12 -2.39 -0.02 1.90 16 37 H 0.07 3.45 7.28 -2.91 -0.02 3.43 16 38 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.19 3.54 2.52 -2.91 -0.01 3.54 16 Total: -1.00 -86.17 315.02 4.18 -81.99 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 1.02 Total: 25.78 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 3.45 Total: -18.56 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.25 Total: -88.49 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.07 Total: -45.87 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -86.17 4.18 -81.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.185 kcal (2) G-P(sol) polarization free energy of solvation -86.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds