Wall clock time and date at job start Tue Mar 31 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86795 * 119.99542 * 2 1 4 4 H 1.48503 * 109.47437 * 269.99556 * 3 2 1 5 5 H 1.48497 * 109.47715 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.46979 * 150.00182 * 3 2 1 7 7 C 1.40042 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99734 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00478 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99623 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00177 * 179.97438 * 9 7 2 12 12 C 1.47662 * 134.89739 * 0.09312 * 11 9 7 13 13 C 1.54360 * 85.93343 * 204.68565 * 12 11 9 14 14 H 1.09001 * 113.12804 * 222.50108 * 13 12 11 15 15 C 1.51961 * 112.18300 * 93.95505 * 13 12 11 16 16 C 1.52514 * 111.41472 * 225.50518 * 15 13 12 17 17 C 1.53136 * 108.84037 * 57.49988 * 16 15 13 18 18 C 1.52585 * 108.73245 * 291.57562 * 17 16 15 19 19 C 1.47198 * 134.80915 * 179.97438 * 11 9 7 20 20 C 1.50699 * 112.14719 * 266.73283 * 19 11 9 21 21 C 1.38245 * 119.99931 * 229.70797 * 20 19 11 22 22 C 1.38231 * 119.99835 * 179.76543 * 21 20 19 23 23 C 1.38243 * 119.99922 * 0.50954 * 22 21 20 24 24 C 1.38229 * 119.99932 * 359.74313 * 23 22 21 25 25 C 1.38234 * 120.00124 * 49.98156 * 20 19 11 26 26 H 0.96992 * 119.99980 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.84110 * 90.41803 * 12 11 9 28 28 H 1.09004 * 113.84246 * 318.95557 * 12 11 9 29 29 H 1.09002 * 109.08255 * 105.02292 * 15 13 12 30 30 H 1.08999 * 109.08103 * 345.98047 * 15 13 12 31 31 H 1.09000 * 109.57606 * 177.31208 * 16 15 13 32 32 H 1.09004 * 109.57328 * 297.56496 * 16 15 13 33 33 H 1.09002 * 109.59644 * 51.34922 * 17 16 15 34 34 H 1.09003 * 109.59756 * 171.80231 * 17 16 15 35 35 H 1.08999 * 109.04694 * 177.32584 * 18 17 16 36 36 H 1.08996 * 109.04603 * 296.28444 * 18 17 16 37 37 H 1.07992 * 119.99640 * 0.02562 * 21 20 19 38 38 H 1.08004 * 120.00052 * 180.23278 * 22 21 20 39 39 H 1.08003 * 119.99859 * 179.72670 * 23 22 21 40 40 H 1.07999 * 119.99808 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.00138 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0005 12 6 3.3761 -4.0272 0.0022 13 6 2.9116 -5.3505 -0.6425 14 1 3.4094 -6.2269 -0.2275 15 6 2.9834 -5.3057 -2.1598 16 6 1.7175 -5.8724 -2.7941 17 6 0.5109 -5.0803 -2.2826 18 6 0.3187 -5.3835 -0.7996 19 6 1.5635 -5.0682 0.0010 20 6 1.4920 -5.6370 1.3947 21 6 2.1350 -6.8245 1.6904 22 6 2.0734 -7.3438 2.9700 23 6 1.3600 -6.6810 3.9513 24 6 0.7128 -5.4963 3.6543 25 6 0.7787 -4.9742 2.3760 26 1 -0.4850 0.8400 0.0004 27 1 3.7986 -4.1483 0.9997 28 1 3.9962 -3.4132 -0.6511 29 1 3.8413 -5.8897 -2.4933 30 1 3.1103 -4.2716 -2.4801 31 1 1.7806 -5.7822 -3.8786 32 1 1.6103 -6.9221 -2.5206 33 1 0.6900 -4.0136 -2.4174 34 1 -0.3813 -5.3760 -2.8347 35 1 -0.5096 -4.7859 -0.4188 36 1 0.0789 -6.4401 -0.6807 37 1 2.6888 -7.3443 0.9228 38 1 2.5788 -8.2696 3.2021 39 1 1.3083 -7.0889 4.9500 40 1 0.1552 -4.9787 4.4208 41 1 0.2724 -4.0490 2.1437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372240677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:07 Heat of formation + Delta-G solvation = 13.696343 kcal Electronic energy + Delta-G solvation = -23436.911118 eV Core-core repulsion = 20282.116606 eV Total energy + Delta-G solvation = -3154.794513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -40.86789 -38.11083 -36.08835 -34.17006 -32.49248 -31.67013 -30.69130 -29.91597 -27.95530 -25.83781 -25.05090 -23.18711 -22.30816 -21.26064 -20.65494 -19.69333 -17.61690 -17.10789 -16.05436 -15.35237 -15.27278 -14.91044 -14.42808 -14.17230 -14.08066 -13.67922 -13.41155 -13.14519 -13.00813 -12.38414 -12.26925 -12.15795 -11.77235 -11.69316 -11.44408 -11.25642 -11.00246 -10.83232 -10.76776 -10.64502 -10.47688 -10.36988 -10.16250 -9.96041 -9.95142 -9.51777 -8.85611 -8.57154 -8.33578 -7.52998 -7.20733 -6.18614 -4.63401 1.68475 1.76299 3.12760 3.19920 3.23102 3.99002 4.14739 4.32666 4.53862 4.79659 4.96493 5.22045 5.25830 5.30423 5.34854 5.43396 5.60272 5.63511 5.71999 5.75812 5.89127 5.96816 6.00297 6.03388 6.11994 6.17249 6.26970 6.28519 6.33694 6.36456 6.44236 6.55867 6.60366 6.70765 6.75634 6.81074 6.89575 6.92264 7.03506 7.20358 7.37561 7.43494 8.12964 8.50185 9.02552 9.63718 10.58287 10.78773 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.006716 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.465228 B = 4168.011751 C = 5086.401609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.583 3.417 10 O -0.570 6.570 11 N -0.642 5.642 12 C 0.112 3.888 13 C -0.116 4.116 14 H 0.077 0.923 15 C -0.095 4.095 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.102 4.102 19 C 0.209 3.791 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.090 4.090 26 H 0.268 0.732 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 -12.637 0.655 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.391 3.609 10 O -0.453 6.453 11 N -0.382 5.382 12 C -0.013 4.013 13 C -0.135 4.135 14 H 0.095 0.905 15 C -0.132 4.132 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.140 4.140 19 C 0.123 3.877 20 C -0.074 4.074 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.108 4.108 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.729 -12.267 0.646 13.163 hybrid contribution 0.585 0.911 0.295 1.122 sum 5.314 -11.356 0.941 12.573 Atomic orbital electron populations 1.70011 1.06932 1.27214 1.35556 1.25678 0.94608 1.00114 0.92677 0.86410 0.80213 0.81550 0.78839 1.19736 1.20455 1.18970 1.20826 0.93533 0.89004 1.54058 0.91676 1.17937 0.86529 0.80642 0.75816 1.90600 1.13589 1.85593 1.55491 1.50312 1.05298 1.02961 1.79587 1.22974 0.87084 0.92648 0.98610 1.22670 0.96468 0.98324 0.96021 0.90527 1.20995 0.97319 1.01824 0.93076 1.21416 0.95439 0.99158 0.99150 1.21346 0.96856 1.01407 0.95121 1.21028 0.97729 1.00208 0.95042 1.19619 0.94156 0.84289 0.89675 1.20203 0.96653 0.94577 0.95974 1.21004 1.00119 0.95963 0.96569 1.21002 1.00306 0.99921 0.93486 1.21050 0.98793 0.96033 0.98934 1.21151 1.00023 0.96205 0.96778 1.21251 0.97294 0.99888 0.92373 0.92154 0.92281 0.91209 0.92415 0.91335 0.92447 0.92514 0.90889 0.92673 0.89887 0.92812 0.86127 0.86644 0.86775 0.86511 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.78 11.83 55.55 0.66 -22.12 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.54 -15.17 9.34 -35.63 -0.33 -15.50 16 8 H 0.06 1.73 7.70 -52.48 -0.40 1.33 16 9 C 0.58 16.23 7.62 -12.99 -0.10 16.13 16 10 O -0.57 -17.71 14.11 5.20 0.07 -17.64 16 11 N -0.64 -14.34 2.91 -169.10 -0.49 -14.83 16 12 C 0.11 2.04 7.52 -2.94 -0.02 2.02 16 13 C -0.12 -1.81 3.56 -90.99 -0.32 -2.14 16 14 H 0.08 1.02 5.80 -51.93 -0.30 0.72 16 15 C -0.09 -1.36 5.60 -27.51 -0.15 -1.52 16 16 C -0.11 -1.61 5.91 -26.91 -0.16 -1.77 16 17 C -0.11 -1.92 5.85 -26.87 -0.16 -2.08 16 18 C -0.10 -1.91 4.76 -27.79 -0.13 -2.05 16 19 C 0.21 3.89 1.08 -134.18 -0.15 3.75 16 20 C -0.07 -1.28 4.34 -104.62 -0.45 -1.74 16 21 C -0.12 -1.73 9.05 -39.58 -0.36 -2.09 16 22 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 23 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 24 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 16 25 C -0.09 -1.73 9.49 -39.58 -0.38 -2.11 16 26 H 0.27 7.24 8.29 -40.82 -0.34 6.91 16 27 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 28 H 0.07 1.24 7.81 -51.93 -0.41 0.84 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.12 7.56 -51.93 -0.39 0.73 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.07 1.56 8.12 -51.93 -0.42 1.13 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.86 7.03 -51.93 -0.37 1.50 16 36 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.12 1.50 6.32 -52.49 -0.33 1.17 16 38 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 40 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.13 3.01 7.56 -52.49 -0.40 2.61 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -32.45 328.60 -9.79 -42.23 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.95 Total: 5.57 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -4.00 Total: -13.42 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.17 Total: -36.95 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.07 Total: -17.64 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.45 -9.79 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.931 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds