Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86795 * 119.99542 * 2 1 4 4 H 1.48503 * 109.47437 * 269.99556 * 3 2 1 5 5 H 1.48497 * 109.47715 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.46979 * 150.00182 * 3 2 1 7 7 C 1.40042 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99734 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00478 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99623 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00177 * 179.97438 * 9 7 2 12 12 C 1.47662 * 134.89739 * 0.09312 * 11 9 7 13 13 C 1.54360 * 85.93343 * 204.68565 * 12 11 9 14 14 H 1.09001 * 113.12804 * 222.50108 * 13 12 11 15 15 C 1.51961 * 112.18300 * 93.95505 * 13 12 11 16 16 C 1.52514 * 111.41472 * 225.50518 * 15 13 12 17 17 C 1.53136 * 108.84037 * 57.49988 * 16 15 13 18 18 C 1.52585 * 108.73245 * 291.57562 * 17 16 15 19 19 C 1.47198 * 134.80915 * 179.97438 * 11 9 7 20 20 C 1.50699 * 112.14719 * 266.73283 * 19 11 9 21 21 C 1.38245 * 119.99931 * 229.70797 * 20 19 11 22 22 C 1.38231 * 119.99835 * 179.76543 * 21 20 19 23 23 C 1.38243 * 119.99922 * 0.50954 * 22 21 20 24 24 C 1.38229 * 119.99932 * 359.74313 * 23 22 21 25 25 C 1.38234 * 120.00124 * 49.98156 * 20 19 11 26 26 H 0.96992 * 119.99980 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.84110 * 90.41803 * 12 11 9 28 28 H 1.09004 * 113.84246 * 318.95557 * 12 11 9 29 29 H 1.09002 * 109.08255 * 105.02292 * 15 13 12 30 30 H 1.08999 * 109.08103 * 345.98047 * 15 13 12 31 31 H 1.09000 * 109.57606 * 177.31208 * 16 15 13 32 32 H 1.09004 * 109.57328 * 297.56496 * 16 15 13 33 33 H 1.09002 * 109.59644 * 51.34922 * 17 16 15 34 34 H 1.09003 * 109.59756 * 171.80231 * 17 16 15 35 35 H 1.08999 * 109.04694 * 177.32584 * 18 17 16 36 36 H 1.08996 * 109.04603 * 296.28444 * 18 17 16 37 37 H 1.07992 * 119.99640 * 0.02562 * 21 20 19 38 38 H 1.08004 * 120.00052 * 180.23278 * 22 21 20 39 39 H 1.08003 * 119.99859 * 179.72670 * 23 22 21 40 40 H 1.07999 * 119.99808 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.00138 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0005 12 6 3.3761 -4.0272 0.0022 13 6 2.9116 -5.3505 -0.6425 14 1 3.4094 -6.2269 -0.2275 15 6 2.9834 -5.3057 -2.1598 16 6 1.7175 -5.8724 -2.7941 17 6 0.5109 -5.0803 -2.2826 18 6 0.3187 -5.3835 -0.7996 19 6 1.5635 -5.0682 0.0010 20 6 1.4920 -5.6370 1.3947 21 6 2.1350 -6.8245 1.6904 22 6 2.0734 -7.3438 2.9700 23 6 1.3600 -6.6810 3.9513 24 6 0.7128 -5.4963 3.6543 25 6 0.7787 -4.9742 2.3760 26 1 -0.4850 0.8400 0.0004 27 1 3.7986 -4.1483 0.9997 28 1 3.9962 -3.4132 -0.6511 29 1 3.8413 -5.8897 -2.4933 30 1 3.1103 -4.2716 -2.4801 31 1 1.7806 -5.7822 -3.8786 32 1 1.6103 -6.9221 -2.5206 33 1 0.6900 -4.0136 -2.4174 34 1 -0.3813 -5.3760 -2.8347 35 1 -0.5096 -4.7859 -0.4188 36 1 0.0789 -6.4401 -0.6807 37 1 2.6888 -7.3443 0.9228 38 1 2.5788 -8.2696 3.2021 39 1 1.3083 -7.0889 4.9500 40 1 0.1552 -4.9787 4.4208 41 1 0.2724 -4.0490 2.1437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372240677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = -5.783811 kcal Electronic energy + Delta-G solvation = -23437.755841 eV Core-core repulsion = 20282.116606 eV Total energy + Delta-G solvation = -3155.639235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.31802 -39.38880 -38.11220 -35.63974 -34.64289 -32.99103 -32.00069 -31.32044 -29.60900 -27.79386 -26.50944 -24.56306 -23.58724 -22.69099 -22.08564 -21.25676 -19.29830 -18.51239 -17.87158 -17.23060 -16.60189 -16.35878 -15.98587 -15.66629 -15.47879 -15.17876 -14.83960 -14.54724 -14.35341 -13.97281 -13.86357 -13.53893 -13.43493 -13.17493 -13.04806 -12.85490 -12.75415 -12.51609 -12.22178 -12.07322 -12.03631 -11.87031 -11.78341 -11.38354 -11.22970 -10.96422 -10.90112 -9.79099 -9.68812 -9.56706 -9.03000 -8.28860 -6.85354 0.46970 0.52821 1.32414 1.34702 1.48996 2.17687 2.45132 2.63902 2.92869 3.41407 3.50501 3.79917 4.01641 4.03545 4.10728 4.18364 4.21956 4.25865 4.34828 4.49905 4.55248 4.61140 4.69065 4.73796 4.76669 4.82707 4.90198 5.00849 5.04279 5.14248 5.14650 5.18554 5.27743 5.28756 5.32663 5.42275 5.50165 5.59780 5.62966 5.69780 5.84562 5.99833 6.16830 6.51858 6.85491 7.70256 8.49825 8.70392 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.006716 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.465228 B = 4168.011751 C = 5086.401609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.571 4.571 8 H 0.074 0.926 9 C 0.571 3.429 10 O -0.622 6.622 11 N -0.656 5.656 12 C 0.105 3.895 13 C -0.089 4.089 14 H 0.121 0.879 15 C -0.096 4.096 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.099 4.099 19 C 0.200 3.800 20 C -0.090 4.090 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.128 4.128 26 H 0.272 0.728 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.083 0.917 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -16.158 0.805 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.607 4.607 8 H 0.092 0.908 9 C 0.378 3.622 10 O -0.508 6.508 11 N -0.393 5.393 12 C -0.019 4.019 13 C -0.108 4.108 14 H 0.139 0.861 15 C -0.134 4.134 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.137 4.137 19 C 0.115 3.885 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.153 4.153 25 C -0.147 4.147 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.101 0.899 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.402 -15.841 0.795 17.949 hybrid contribution -0.591 1.888 0.325 2.005 sum 7.810 -13.953 1.121 16.030 Atomic orbital electron populations 1.70193 1.09331 1.28654 1.37047 1.26898 0.95505 1.04624 0.91335 0.85107 0.78755 0.75463 0.79522 1.18389 1.19598 1.17595 1.21320 0.94146 0.90304 1.54955 0.90769 1.18106 0.86138 0.82589 0.75391 1.90542 1.15766 1.87082 1.57442 1.50125 1.07669 1.03576 1.77976 1.23254 0.84796 0.94339 0.99495 1.22610 0.93380 0.98036 0.96735 0.86107 1.21078 0.99219 1.01047 0.92020 1.21392 0.92800 0.99826 1.00116 1.21313 0.99632 0.98866 0.94789 1.20983 0.96332 1.00673 0.95717 1.19978 0.95647 0.81844 0.91081 1.20176 0.97950 0.96303 0.94731 1.21327 0.99030 0.94180 0.98298 1.21546 0.98622 1.00732 0.92262 1.21454 0.97187 0.94335 1.00985 1.21263 1.00898 0.97711 0.95438 1.20943 0.99727 0.98972 0.95054 0.91766 0.91555 0.91137 0.87923 0.94292 0.90624 0.89385 0.96227 0.91821 0.95613 0.89886 0.82574 0.82011 0.83204 0.86307 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.44 11.83 21.83 0.26 -52.18 16 2 C 0.03 1.81 5.50 85.30 0.47 2.28 16 3 Si 0.99 43.22 29.56 68.60 2.03 45.25 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.57 -34.34 9.34 24.83 0.23 -34.11 16 8 H 0.07 4.14 7.70 -2.91 -0.02 4.11 16 9 C 0.57 34.71 7.62 86.36 0.66 35.37 16 10 O -0.62 -43.02 14.11 -4.32 -0.06 -43.08 16 11 N -0.66 -31.15 2.91 -807.13 -2.34 -33.49 16 12 C 0.10 3.80 7.52 86.46 0.65 4.45 16 13 C -0.09 -2.55 3.56 -10.97 -0.04 -2.59 16 14 H 0.12 2.47 5.80 -2.39 -0.01 2.46 16 15 C -0.10 -2.48 5.60 30.09 0.17 -2.32 16 16 C -0.10 -2.64 5.91 30.48 0.18 -2.46 16 17 C -0.11 -3.94 5.85 30.50 0.18 -3.76 16 18 C -0.10 -3.90 4.76 29.91 0.14 -3.76 16 19 C 0.20 7.56 1.08 1.70 0.00 7.57 16 20 C -0.09 -3.18 4.34 -19.86 -0.09 -3.27 16 21 C -0.11 -2.75 9.05 22.27 0.20 -2.55 16 22 C -0.11 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 24 C -0.14 -4.44 10.05 22.27 0.22 -4.22 16 25 C -0.13 -5.31 9.49 22.27 0.21 -5.10 16 26 H 0.27 15.78 8.29 -92.71 -0.77 15.01 16 27 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 28 H 0.07 2.52 7.81 -2.38 -0.02 2.50 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.24 7.56 -2.39 -0.02 1.22 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.76 8.12 -2.38 -0.02 1.74 16 33 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.02 1.28 7.03 -2.39 -0.02 1.26 16 36 H 0.08 2.70 8.10 -2.39 -0.02 2.68 16 37 H 0.16 2.77 6.32 -2.91 -0.02 2.75 16 38 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 41 H 0.07 3.55 7.56 -2.91 -0.02 3.53 16 Total: -1.00 -83.45 328.60 4.54 -78.91 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 1.02 Total: 23.97 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.64 Total: -19.37 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.09 Total: -85.68 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.06 Total: -43.08 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -83.45 4.54 -78.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.131 kcal (2) G-P(sol) polarization free energy of solvation -83.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds