Wall clock time and date at job start Tue Mar 31 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00018 * 2 1 4 4 H 1.48510 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47176 * 299.99407 * 3 2 1 6 6 H 1.48504 * 109.47280 * 59.99921 * 3 2 1 7 7 C 1.40051 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00088 * 28.31671 * 7 2 1 9 9 C 1.46374 * 119.99869 * 208.31386 * 7 2 1 10 10 O 1.21692 * 120.00176 * 8.42980 * 9 7 2 11 11 N 1.34785 * 120.00174 * 188.42615 * 9 7 2 12 12 C 1.49149 * 137.97038 * 359.97438 * 11 9 7 13 13 C 1.50452 * 85.08588 * 140.94176 * 12 11 9 14 14 H 1.09002 * 113.78750 * 283.87122 * 13 12 11 15 15 C 1.51853 * 124.01717 * 138.21535 * 13 12 11 16 16 C 1.53554 * 106.20107 * 206.44617 * 15 13 12 17 17 C 1.52368 * 112.44499 * 56.99259 * 16 15 13 18 18 C 1.54264 * 112.11049 * 306.36848 * 17 16 15 19 19 C 1.43131 * 137.97528 * 179.62272 * 11 9 7 20 20 C 1.50695 * 112.00385 * 106.42702 * 19 11 9 21 21 C 1.38226 * 120.00346 * 153.31558 * 20 19 11 22 22 C 1.38233 * 120.00114 * 179.80861 * 21 20 19 23 23 C 1.38234 * 120.00120 * 0.41570 * 22 21 20 24 24 C 1.38230 * 119.99796 * 359.81607 * 23 22 21 25 25 C 1.38239 * 119.99548 * 333.58470 * 20 19 11 26 26 H 0.97001 * 119.99635 * 185.01368 * 1 2 3 27 27 H 1.08998 * 113.93520 * 254.97532 * 12 11 9 28 28 H 1.09001 * 113.93534 * 26.90630 * 12 11 9 29 29 H 1.08998 * 110.09042 * 326.10816 * 15 13 12 30 30 H 1.09004 * 110.09381 * 87.74580 * 15 13 12 31 31 H 1.08997 * 108.99252 * 296.18267 * 16 15 13 32 32 H 1.09001 * 108.85473 * 177.70511 * 16 15 13 33 33 H 1.08996 * 108.95596 * 185.69099 * 17 16 15 34 34 H 1.08999 * 108.88743 * 66.99446 * 17 16 15 35 35 H 1.09001 * 110.18093 * 297.65724 * 18 17 16 36 36 H 1.09007 * 110.18234 * 175.78715 * 18 17 16 37 37 H 1.08009 * 119.99972 * 359.97438 * 21 20 19 38 38 H 1.08004 * 120.00091 * 180.20980 * 22 21 20 39 39 H 1.08001 * 120.00376 * 179.79194 * 23 22 21 40 40 H 1.08003 * 120.00118 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.00148 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 1.5638 -2.0924 -0.4427 9 6 3.3393 -1.2885 0.6018 10 8 3.7757 -0.3451 1.2346 11 7 4.0828 -2.4030 0.4548 12 6 3.9623 -3.7365 -0.2023 13 6 5.4125 -3.5490 -0.5564 14 1 5.5779 -2.8510 -1.3771 15 6 6.4563 -4.6488 -0.4734 16 6 7.8032 -3.9452 -0.2526 17 6 7.8010 -3.0606 0.9879 18 6 6.6348 -2.0508 0.9789 19 6 5.3738 -2.8795 0.8483 20 6 5.2853 -3.9102 1.9441 21 6 6.2793 -4.8610 2.0806 22 6 6.2001 -5.8041 3.0882 23 6 5.1225 -5.8016 3.9540 24 6 4.1260 -4.8537 3.8146 25 6 4.2072 -3.9083 2.8093 26 1 -0.4850 -0.8369 0.0734 27 1 3.7791 -4.5566 0.4919 28 1 3.2945 -3.7463 -1.0637 29 1 6.2325 -5.3153 0.3595 30 1 6.4836 -5.2104 -1.4072 31 1 8.0291 -3.3302 -1.1237 32 1 8.5818 -4.7005 -0.1455 33 1 8.7426 -2.5135 1.0344 34 1 7.7151 -3.6926 1.8718 35 1 6.7300 -1.3739 0.1299 36 1 6.6188 -1.4865 1.9114 37 1 7.1193 -4.8655 1.4016 38 1 6.9784 -6.5449 3.1970 39 1 5.0588 -6.5404 4.7392 40 1 3.2839 -4.8520 4.4907 41 1 3.4286 -3.1678 2.7002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372240679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:09 Heat of formation + Delta-G solvation = 88.288518 kcal Electronic energy + Delta-G solvation = -23668.519801 eV Core-core repulsion = 20516.959848 eV Total energy + Delta-G solvation = -3151.559953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30660 -38.10620 -36.87469 -35.35764 -32.89795 -31.28592 -30.48474 -30.19316 -28.49838 -25.93310 -25.40864 -23.22277 -22.55473 -21.41955 -20.49337 -19.86587 -18.71753 -17.42627 -16.16016 -15.66864 -15.48974 -15.21670 -14.83023 -14.38096 -13.88981 -13.76689 -13.68081 -13.34090 -12.69535 -12.59106 -12.45431 -12.35624 -12.29917 -12.02293 -11.82310 -11.54966 -11.29414 -10.94320 -10.83455 -10.75900 -10.69480 -10.39323 -10.02436 -9.57986 -9.34127 -9.29749 -8.81733 -8.55641 -8.27377 -7.98334 -7.46173 -7.02346 -4.85802 1.54576 1.61636 3.47035 3.54896 3.84043 3.99405 4.03627 4.20603 4.51810 4.55841 4.82145 4.92587 5.06841 5.12400 5.16682 5.24544 5.36940 5.37743 5.48189 5.59052 5.62666 5.70831 5.77168 5.80815 5.84240 5.89048 6.04994 6.07040 6.16971 6.17836 6.20456 6.32239 6.34625 6.39728 6.46583 6.59078 6.66756 6.71784 6.81824 6.96917 7.23594 7.76980 7.85224 8.27608 8.82012 9.27372 10.19329 10.24804 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.006338 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.615662 B = 4416.609389 C = 5027.759932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.078 3.922 3 Si 1.080 2.920 4 H -0.252 1.252 5 H -0.306 1.306 6 H -0.286 1.286 7 C -0.605 4.605 8 H 0.070 0.930 9 C 0.581 3.419 10 O -0.612 6.612 11 N -0.636 5.636 12 C 0.118 3.882 13 C -0.129 4.129 14 H 0.102 0.898 15 C -0.140 4.140 16 C -0.120 4.120 17 C -0.145 4.145 18 C -0.094 4.094 19 C 0.179 3.821 20 C -0.072 4.072 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.098 4.098 26 H 0.282 0.718 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.167 0.833 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.375 -12.748 1.465 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.143 4.143 3 Si 0.907 3.093 4 H -0.176 1.176 5 H -0.235 1.235 6 H -0.212 1.212 7 C -0.641 4.641 8 H 0.088 0.912 9 C 0.393 3.607 10 O -0.502 6.502 11 N -0.371 5.371 12 C -0.006 4.006 13 C -0.148 4.148 14 H 0.120 0.880 15 C -0.177 4.177 16 C -0.157 4.157 17 C -0.182 4.182 18 C -0.133 4.133 19 C 0.090 3.910 20 C -0.074 4.074 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.116 4.116 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.184 0.816 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.163 -10.432 1.751 16.887 hybrid contribution -0.245 -1.836 0.179 1.861 sum 12.918 -12.268 1.930 17.919 Atomic orbital electron populations 1.70606 1.08256 1.32119 1.33476 1.26894 0.94868 1.04448 0.88082 0.83387 0.78174 0.72138 0.75628 1.17639 1.23527 1.21236 1.21780 0.99336 0.99475 1.43470 0.91166 1.18016 0.83811 0.78384 0.80471 1.90465 1.74716 1.36543 1.48523 1.49547 1.15919 1.13950 1.57685 1.22446 0.94967 0.86549 0.96600 1.23275 0.95131 0.98844 0.97599 0.88024 1.22229 0.94185 0.98281 1.03035 1.21416 0.96973 0.98702 0.98614 1.22302 0.98196 0.98376 0.99349 1.21362 0.92148 0.96949 1.02805 1.19875 0.87595 0.91651 0.91862 1.20126 0.94458 0.96019 0.96832 1.22145 1.00234 0.94974 0.98883 1.21096 0.98489 0.99500 0.96214 1.21073 0.94926 0.99027 0.99571 1.21122 0.99013 0.95709 0.98478 1.21187 0.98075 0.98179 0.94130 0.90759 0.90607 0.91040 0.88248 0.91940 0.91763 0.92008 0.92069 0.89317 0.91052 0.91553 0.81650 0.86475 0.86744 0.86515 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.65 13.64 55.55 0.76 -22.89 16 2 C 0.08 2.25 5.47 -17.37 -0.09 2.15 16 3 Si 1.08 28.09 27.33 -169.99 -4.65 23.45 16 4 H -0.25 -6.83 5.87 56.52 0.33 -6.49 16 5 H -0.31 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.61 -17.37 9.72 -35.63 -0.35 -17.71 16 8 H 0.07 2.02 8.06 -52.49 -0.42 1.60 16 9 C 0.58 15.97 7.44 -12.98 -0.10 15.88 16 10 O -0.61 -18.27 13.58 5.20 0.07 -18.20 16 11 N -0.64 -14.25 2.47 -235.97 -0.58 -14.83 16 12 C 0.12 2.13 7.91 -24.08 -0.19 1.94 16 13 C -0.13 -2.02 3.66 -91.58 -0.34 -2.36 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 15 C -0.14 -1.65 5.61 -27.03 -0.15 -1.80 16 16 C -0.12 -1.28 4.93 -26.77 -0.13 -1.41 16 17 C -0.14 -1.79 5.35 -26.39 -0.14 -1.93 16 18 C -0.09 -1.60 5.81 -26.85 -0.16 -1.76 16 19 C 0.18 3.25 1.83 -154.35 -0.28 2.97 16 20 C -0.07 -1.20 3.26 -104.63 -0.34 -1.54 16 21 C -0.15 -1.92 4.86 -39.59 -0.19 -2.11 16 22 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 23 C -0.13 -1.62 10.05 -39.59 -0.40 -2.02 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.10 -1.75 8.48 -39.58 -0.34 -2.09 16 26 H 0.28 7.86 8.72 -40.82 -0.36 7.50 16 27 H 0.08 1.31 6.00 -51.93 -0.31 1.00 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.10 1.17 3.92 -54.05 -0.21 0.96 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.08 4.30 -51.93 -0.22 0.85 16 35 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.17 1.87 2.55 -52.48 -0.13 1.74 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.12 2.67 7.26 -52.49 -0.38 2.28 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -32.08 311.66 -9.25 -41.33 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.56 Total: 2.54 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.99 Total: -16.08 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.17 Total: -37.72 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.07 Total: -18.20 kcal Atomic # 14 Polarization: 28.09 SS G_CDS: -4.65 Total: 23.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.08 -9.25 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.615 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds