Wall clock time and date at job start Tue Mar 31 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86793 * 120.00197 * 2 1 4 4 H 1.48505 * 109.47195 * 274.98435 * 3 2 1 5 5 H 1.48500 * 109.47452 * 34.98450 * 3 2 1 6 6 H 1.48501 * 109.47127 * 154.98580 * 3 2 1 7 7 C 1.40049 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00161 * 186.14704 * 7 2 1 9 9 C 1.46377 * 119.99908 * 6.14908 * 7 2 1 10 10 O 1.21682 * 120.00196 * 353.92310 * 9 7 2 11 11 N 1.34780 * 119.99856 * 173.92801 * 9 7 2 12 12 C 1.47276 * 136.54998 * 359.62214 * 11 9 7 13 13 C 1.54096 * 87.58535 * 151.69076 * 12 11 9 14 14 H 1.08994 * 113.86450 * 140.34323 * 13 12 11 15 15 C 1.51508 * 112.95656 * 270.96832 * 13 12 11 16 16 C 1.51532 * 114.03726 * 126.40433 * 15 13 12 17 17 C 1.52567 * 111.29119 * 311.98614 * 16 15 13 18 18 C 1.51719 * 109.10839 * 63.32910 * 17 16 15 19 19 C 1.46511 * 136.55148 * 179.97438 * 11 9 7 20 20 C 1.50709 * 112.39575 * 94.96690 * 19 11 9 21 21 C 1.38233 * 120.00062 * 130.22144 * 20 19 11 22 22 C 1.38235 * 120.00204 * 179.81311 * 21 20 19 23 23 C 1.38232 * 119.99439 * 0.42009 * 22 21 20 24 24 C 1.38239 * 120.00475 * 359.80976 * 23 22 21 25 25 C 1.38230 * 119.99807 * 310.49635 * 20 19 11 26 26 H 0.97002 * 120.00081 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.53191 * 266.36417 * 12 11 9 28 28 H 1.08996 * 113.53471 * 37.00910 * 12 11 9 29 29 H 1.08996 * 108.57138 * 247.58923 * 15 13 12 30 30 H 1.09004 * 108.56962 * 5.37872 * 15 13 12 31 31 H 1.09007 * 109.10851 * 72.45194 * 16 15 13 32 32 H 1.09000 * 109.11588 * 191.51523 * 16 15 13 33 33 H 1.09003 * 109.58866 * 183.52597 * 17 16 15 34 34 H 1.08997 * 109.59457 * 303.96537 * 17 16 15 35 35 H 1.09001 * 109.97538 * 177.40039 * 18 17 16 36 36 H 1.09009 * 108.25009 * 57.82471 * 18 17 16 37 37 H 1.08008 * 119.99745 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.99933 * 180.20533 * 22 21 20 39 39 H 1.08009 * 119.99795 * 179.79364 * 23 22 21 40 40 H 1.08003 * 119.99888 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.00108 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1385 11 7 1.9609 -3.6341 -0.2605 12 6 3.3747 -4.0437 -0.3099 13 6 2.9362 -5.3956 0.2857 14 1 3.4517 -6.2546 -0.1437 15 6 2.9369 -5.4019 1.8007 16 6 1.6239 -5.8411 2.4167 17 6 0.4426 -5.1176 1.7774 18 6 0.3642 -5.4950 0.3100 19 6 1.6273 -5.0526 -0.4127 20 6 1.6147 -5.4879 -1.8554 21 6 2.3078 -6.6198 -2.2419 22 6 2.2931 -7.0213 -3.5646 23 6 1.5924 -6.2861 -4.5022 24 6 0.9031 -5.1515 -4.1166 25 6 0.9147 -4.7522 -2.7933 26 1 -0.4850 0.8401 0.0004 27 1 3.7700 -4.1221 -1.3227 28 1 4.0189 -3.4649 0.3519 29 1 3.7236 -6.0733 2.1447 30 1 3.1630 -4.3951 2.1520 31 1 1.5044 -6.9152 2.2740 32 1 1.6402 -5.6236 3.4847 33 1 -0.4794 -5.4067 2.2819 34 1 0.5851 -4.0403 1.8609 35 1 -0.5030 -5.0216 -0.1504 36 1 0.2665 -6.5785 0.2408 37 1 2.8587 -7.1919 -1.5099 38 1 2.8319 -7.9074 -3.8659 39 1 1.5836 -6.5979 -5.5363 40 1 0.3560 -4.5769 -4.8494 41 1 0.3764 -3.8657 -2.4920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372240680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:13 Heat of formation + Delta-G solvation = 19.936503 kcal Electronic energy + Delta-G solvation = -23472.177747 eV Core-core repulsion = 20317.653828 eV Total energy + Delta-G solvation = -3154.523919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03850 -38.14633 -36.08678 -34.26270 -32.50740 -31.64440 -30.70916 -29.95775 -28.02899 -25.91199 -24.98800 -23.23145 -22.31172 -21.22910 -20.67446 -19.66155 -17.57926 -17.13088 -16.07692 -15.39100 -15.27948 -14.87947 -14.43572 -14.18716 -14.17334 -13.67729 -13.34954 -13.17903 -13.01272 -12.38643 -12.31813 -12.14076 -11.83288 -11.73970 -11.42823 -11.27084 -11.00035 -10.81381 -10.75300 -10.62057 -10.47017 -10.38998 -10.14373 -9.94641 -9.85627 -9.42460 -8.86007 -8.58460 -8.32054 -7.58429 -7.23532 -6.21630 -4.64361 1.67373 1.74972 3.12065 3.19571 3.22820 3.99448 4.13644 4.36557 4.52110 4.73305 4.95969 5.21364 5.24759 5.31179 5.35337 5.43905 5.61049 5.64577 5.72169 5.75563 5.88291 5.95671 6.00630 6.06715 6.14793 6.17761 6.27784 6.30439 6.34196 6.36702 6.43878 6.58328 6.62863 6.72238 6.73334 6.81290 6.87791 6.93639 7.09205 7.17745 7.36024 7.42715 8.11839 8.49831 9.01218 9.64414 10.56379 10.76600 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.006804 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.645809 B = 4114.080758 C = 5046.903677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.589 3.411 10 O -0.568 6.568 11 N -0.641 5.641 12 C 0.110 3.890 13 C -0.120 4.120 14 H 0.081 0.919 15 C -0.090 4.090 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.098 4.098 19 C 0.204 3.796 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.090 4.090 26 H 0.268 0.732 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -12.307 -2.007 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.397 3.603 10 O -0.450 6.450 11 N -0.381 5.381 12 C -0.015 4.015 13 C -0.139 4.139 14 H 0.099 0.901 15 C -0.128 4.128 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.136 4.136 19 C 0.117 3.883 20 C -0.073 4.073 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.109 4.109 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.959 -11.920 -1.949 13.057 hybrid contribution 0.570 0.902 -0.298 1.107 sum 5.529 -11.018 -2.247 12.531 Atomic orbital electron populations 1.70017 1.06959 1.27267 1.35441 1.25674 0.94599 1.00140 0.92657 0.86383 0.80292 0.81580 0.78693 1.19829 1.20418 1.18899 1.20806 0.94044 0.89035 1.53518 0.91595 1.17865 0.86348 0.80097 0.75963 1.90617 1.13529 1.84798 1.56027 1.50035 1.05781 1.04002 1.78247 1.22870 0.87464 0.92235 0.98935 1.22548 0.97278 0.98172 0.95855 0.90125 1.20583 0.97247 1.01977 0.92965 1.21068 0.95174 0.99396 0.99100 1.21112 0.96720 1.02467 0.94812 1.21032 0.97549 0.99212 0.95853 1.19740 0.94381 0.84875 0.89278 1.20172 0.96497 0.94801 0.95791 1.21015 0.99822 0.96875 0.95953 1.21004 1.00347 0.99894 0.93406 1.21050 0.98700 0.96034 0.99036 1.21147 0.99838 0.96957 0.96172 1.21207 0.97697 0.99488 0.92468 0.92124 0.92175 0.91537 0.92556 0.91588 0.92999 0.92521 0.92792 0.90234 0.90798 0.92806 0.86097 0.86623 0.86764 0.86507 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.71 11.85 55.55 0.66 -22.05 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.24 29.56 -169.99 -5.03 15.21 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -15.13 9.39 -35.63 -0.33 -15.46 16 8 H 0.07 1.75 7.80 -52.49 -0.41 1.34 16 9 C 0.59 16.35 6.93 -12.98 -0.09 16.26 16 10 O -0.57 -17.60 14.60 5.20 0.08 -17.52 16 11 N -0.64 -14.30 2.59 -182.48 -0.47 -14.77 16 12 C 0.11 2.01 7.42 -11.55 -0.09 1.92 16 13 C -0.12 -1.87 3.85 -91.17 -0.35 -2.22 16 14 H 0.08 1.06 5.90 -51.93 -0.31 0.75 16 15 C -0.09 -1.33 5.58 -28.23 -0.16 -1.48 16 16 C -0.11 -1.62 5.83 -27.70 -0.16 -1.78 16 17 C -0.11 -2.08 5.76 -27.60 -0.16 -2.24 16 18 C -0.10 -1.84 4.62 -27.84 -0.13 -1.97 16 19 C 0.20 3.79 1.05 -142.30 -0.15 3.64 16 20 C -0.07 -1.25 4.02 -104.62 -0.42 -1.67 16 21 C -0.12 -1.71 9.14 -39.58 -0.36 -2.07 16 22 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 24 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.09 -1.72 9.49 -39.59 -0.38 -2.10 16 26 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 27 H 0.06 1.07 7.74 -51.93 -0.40 0.66 16 28 H 0.07 1.19 7.83 -51.93 -0.41 0.78 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.81 6.53 -51.93 -0.34 1.47 16 35 H 0.07 1.61 7.75 -51.93 -0.40 1.21 16 36 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.12 1.49 6.24 -52.48 -0.33 1.16 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.13 2.93 7.97 -52.48 -0.42 2.51 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -32.30 327.08 -9.82 -42.12 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.92 Total: 5.50 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -4.06 Total: -13.42 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.19 Total: -36.82 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.08 Total: -17.52 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.30 -9.82 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.055 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds