Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86793 * 120.00197 * 2 1 4 4 H 1.48505 * 109.47195 * 274.98435 * 3 2 1 5 5 H 1.48500 * 109.47452 * 34.98450 * 3 2 1 6 6 H 1.48501 * 109.47127 * 154.98580 * 3 2 1 7 7 C 1.40049 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00161 * 186.14704 * 7 2 1 9 9 C 1.46377 * 119.99908 * 6.14908 * 7 2 1 10 10 O 1.21682 * 120.00196 * 353.92310 * 9 7 2 11 11 N 1.34780 * 119.99856 * 173.92801 * 9 7 2 12 12 C 1.47276 * 136.54998 * 359.62214 * 11 9 7 13 13 C 1.54096 * 87.58535 * 151.69076 * 12 11 9 14 14 H 1.08994 * 113.86450 * 140.34323 * 13 12 11 15 15 C 1.51508 * 112.95656 * 270.96832 * 13 12 11 16 16 C 1.51532 * 114.03726 * 126.40433 * 15 13 12 17 17 C 1.52567 * 111.29119 * 311.98614 * 16 15 13 18 18 C 1.51719 * 109.10839 * 63.32910 * 17 16 15 19 19 C 1.46511 * 136.55148 * 179.97438 * 11 9 7 20 20 C 1.50709 * 112.39575 * 94.96690 * 19 11 9 21 21 C 1.38233 * 120.00062 * 130.22144 * 20 19 11 22 22 C 1.38235 * 120.00204 * 179.81311 * 21 20 19 23 23 C 1.38232 * 119.99439 * 0.42009 * 22 21 20 24 24 C 1.38239 * 120.00475 * 359.80976 * 23 22 21 25 25 C 1.38230 * 119.99807 * 310.49635 * 20 19 11 26 26 H 0.97002 * 120.00081 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.53191 * 266.36417 * 12 11 9 28 28 H 1.08996 * 113.53471 * 37.00910 * 12 11 9 29 29 H 1.08996 * 108.57138 * 247.58923 * 15 13 12 30 30 H 1.09004 * 108.56962 * 5.37872 * 15 13 12 31 31 H 1.09007 * 109.10851 * 72.45194 * 16 15 13 32 32 H 1.09000 * 109.11588 * 191.51523 * 16 15 13 33 33 H 1.09003 * 109.58866 * 183.52597 * 17 16 15 34 34 H 1.08997 * 109.59457 * 303.96537 * 17 16 15 35 35 H 1.09001 * 109.97538 * 177.40039 * 18 17 16 36 36 H 1.09009 * 108.25009 * 57.82471 * 18 17 16 37 37 H 1.08008 * 119.99745 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.99933 * 180.20533 * 22 21 20 39 39 H 1.08009 * 119.99795 * 179.79364 * 23 22 21 40 40 H 1.08003 * 119.99888 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.00108 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1385 11 7 1.9609 -3.6341 -0.2605 12 6 3.3747 -4.0437 -0.3099 13 6 2.9362 -5.3956 0.2857 14 1 3.4517 -6.2546 -0.1437 15 6 2.9369 -5.4019 1.8007 16 6 1.6239 -5.8411 2.4167 17 6 0.4426 -5.1176 1.7774 18 6 0.3642 -5.4950 0.3100 19 6 1.6273 -5.0526 -0.4127 20 6 1.6147 -5.4879 -1.8554 21 6 2.3078 -6.6198 -2.2419 22 6 2.2931 -7.0213 -3.5646 23 6 1.5924 -6.2861 -4.5022 24 6 0.9031 -5.1515 -4.1166 25 6 0.9147 -4.7522 -2.7933 26 1 -0.4850 0.8401 0.0004 27 1 3.7700 -4.1221 -1.3227 28 1 4.0189 -3.4649 0.3519 29 1 3.7236 -6.0733 2.1447 30 1 3.1630 -4.3951 2.1520 31 1 1.5044 -6.9152 2.2740 32 1 1.6402 -5.6236 3.4847 33 1 -0.4794 -5.4067 2.2819 34 1 0.5851 -4.0403 1.8609 35 1 -0.5030 -5.0216 -0.1504 36 1 0.2665 -6.5785 0.2408 37 1 2.8587 -7.1919 -1.5099 38 1 2.8319 -7.9074 -3.8659 39 1 1.5836 -6.5979 -5.5363 40 1 0.3560 -4.5769 -4.8494 41 1 0.3764 -3.8657 -2.4920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372240680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = 0.635242 kcal Electronic energy + Delta-G solvation = -23473.014712 eV Core-core repulsion = 20317.653828 eV Total energy + Delta-G solvation = -3155.360884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48961 -39.40931 -38.11913 -35.73668 -34.65356 -32.96103 -32.01726 -31.35434 -29.66271 -27.87126 -26.46027 -24.61845 -23.58079 -22.66762 -22.12255 -21.22337 -19.27991 -18.51877 -17.86700 -17.27482 -16.59767 -16.32270 -16.01129 -15.66314 -15.56079 -15.20828 -14.78521 -14.58996 -14.34152 -14.00795 -13.91508 -13.48419 -13.43246 -13.23671 -13.06755 -12.89948 -12.75184 -12.54046 -12.17963 -12.07171 -12.02424 -11.84854 -11.76870 -11.34106 -11.16907 -10.97126 -10.83515 -9.78963 -9.73727 -9.55560 -9.04813 -8.31316 -6.85464 0.47222 0.53035 1.32351 1.34078 1.49286 2.17426 2.45478 2.67153 2.93333 3.33409 3.49124 3.80205 3.99663 4.02589 4.10681 4.18273 4.22947 4.25578 4.35091 4.48918 4.56926 4.62221 4.69446 4.73438 4.77294 4.81938 4.90932 5.01567 5.03726 5.12514 5.14186 5.18975 5.27431 5.27877 5.35402 5.42320 5.50400 5.60817 5.63747 5.70235 5.84239 5.99116 6.17002 6.51447 6.84934 7.72539 8.48783 8.69299 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.006804 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.645809 B = 4114.080758 C = 5046.903677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.579 3.421 10 O -0.620 6.620 11 N -0.656 5.656 12 C 0.104 3.896 13 C -0.090 4.090 14 H 0.128 0.872 15 C -0.093 4.093 16 C -0.102 4.102 17 C -0.112 4.112 18 C -0.096 4.096 19 C 0.195 3.805 20 C -0.088 4.088 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.129 4.129 26 H 0.273 0.727 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 -15.776 -2.495 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.607 4.607 8 H 0.092 0.908 9 C 0.386 3.614 10 O -0.506 6.506 11 N -0.394 5.394 12 C -0.020 4.020 13 C -0.109 4.109 14 H 0.146 0.854 15 C -0.131 4.131 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.134 4.134 19 C 0.109 3.891 20 C -0.089 4.089 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.153 4.153 25 C -0.147 4.147 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.106 0.894 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.740 -15.442 -2.441 17.910 hybrid contribution -0.636 1.864 -0.221 1.982 sum 8.103 -13.578 -2.662 16.035 Atomic orbital electron populations 1.70194 1.09343 1.28710 1.36953 1.26891 0.95488 1.04606 0.91322 0.85092 0.79021 0.75559 0.79164 1.18919 1.19373 1.17306 1.21292 0.94605 0.90351 1.54445 0.90762 1.17978 0.85933 0.81910 0.75557 1.90553 1.15732 1.86314 1.58005 1.49767 1.08206 1.04663 1.76730 1.23136 0.85150 0.93960 0.99753 1.22536 0.94234 0.97803 0.96316 0.85414 1.20687 0.98543 1.01639 0.92188 1.21041 0.93035 1.00645 0.99247 1.21073 0.99253 0.99350 0.95320 1.20994 0.96073 1.00604 0.95704 1.20107 0.95775 0.82405 0.90858 1.20124 0.97870 0.96457 0.94498 1.21340 0.98639 0.95228 0.97608 1.21546 0.98799 1.00425 0.92346 1.21454 0.97044 0.94326 1.01161 1.21260 1.00762 0.98479 0.94754 1.20906 0.99934 0.98962 0.94923 0.91717 0.91391 0.91619 0.87905 0.94421 0.89527 0.91437 0.92401 0.96038 0.96035 0.89374 0.82512 0.82016 0.83227 0.86291 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.29 11.85 21.84 0.26 -52.04 16 2 C 0.03 1.84 5.49 85.30 0.47 2.31 16 3 Si 0.99 43.17 29.56 68.60 2.03 45.20 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.57 -34.25 9.39 24.83 0.23 -34.02 16 8 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 9 C 0.58 35.09 6.93 86.36 0.60 35.69 16 10 O -0.62 -42.77 14.60 -4.29 -0.06 -42.83 16 11 N -0.66 -31.08 2.59 -849.46 -2.20 -33.28 16 12 C 0.10 3.75 7.42 81.09 0.60 4.35 16 13 C -0.09 -2.55 3.85 -11.15 -0.04 -2.60 16 14 H 0.13 2.50 5.90 -2.39 -0.01 2.49 16 15 C -0.09 -2.46 5.58 29.62 0.17 -2.29 16 16 C -0.10 -2.78 5.83 29.97 0.17 -2.60 16 17 C -0.11 -4.28 5.76 30.03 0.17 -4.11 16 18 C -0.10 -3.74 4.62 29.87 0.14 -3.60 16 19 C 0.19 7.30 1.05 -3.19 0.00 7.30 16 20 C -0.09 -3.07 4.02 -19.86 -0.08 -3.15 16 21 C -0.11 -2.70 9.14 22.27 0.20 -2.49 16 22 C -0.11 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.12 -2.92 10.05 22.27 0.22 -2.69 16 24 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 25 C -0.13 -5.26 9.49 22.27 0.21 -5.05 16 26 H 0.27 15.75 8.29 -92.71 -0.77 14.98 16 27 H 0.07 2.34 7.74 -2.39 -0.02 2.33 16 28 H 0.07 2.35 7.83 -2.39 -0.02 2.33 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.21 7.50 -2.39 -0.02 1.19 16 31 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.02 1.05 6.53 -2.39 -0.02 1.03 16 35 H 0.02 1.03 7.75 -2.39 -0.02 1.01 16 36 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.16 2.69 6.24 -2.91 -0.02 2.68 16 38 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.06 3.44 7.97 -2.91 -0.02 3.42 16 Total: -1.00 -83.20 327.08 4.55 -78.65 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.02 Total: 23.53 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 3.51 Total: -19.24 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.94 Total: -85.32 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.06 Total: -42.83 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -83.20 4.55 -78.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372240680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.282 kcal (2) G-P(sol) polarization free energy of solvation -83.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds