Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35455 * 117.00091 * 2 1 4 4 N 1.32331 * 119.19859 * 0.02562 * 3 2 1 5 5 C 1.32284 * 120.75951 * 180.02562 * 4 3 2 6 6 C 1.38613 * 119.17340 * 359.97438 * 5 4 3 7 7 C 1.38565 * 118.52136 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.41191 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46630 * 94.99949 * 8 7 6 10 10 C 1.38862 * 119.99395 * 180.02562 * 9 8 7 11 11 C 1.39568 * 119.83821 * 180.02562 * 10 9 8 12 12 C 1.36337 * 120.16064 * 180.25014 * 11 10 9 13 13 C 1.40885 * 119.83577 * 359.50735 * 12 11 10 14 14 C 1.41136 * 120.15703 * 180.25148 * 13 12 11 15 15 H 1.07994 * 119.99982 * 24.87913 * 14 13 12 16 16 C 1.39868 * 119.99700 * 204.88066 * 14 13 12 17 17 N 1.30905 * 120.00320 * 17.96337 * 16 14 13 18 18 Si 1.86807 * 119.99880 * 197.96241 * 16 14 13 19 19 H 1.48498 * 109.47058 * 59.99975 * 18 16 14 20 20 H 1.48494 * 109.47133 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47092 * 300.00264 * 18 16 14 22 22 C 1.40887 * 119.68702 * 0.50986 * 13 12 11 23 23 C 1.36336 * 119.83640 * 359.74041 * 22 13 12 24 24 N 1.32304 * 119.19187 * 180.28056 * 3 2 1 25 25 H 1.09003 * 109.47198 * 59.99366 * 1 2 3 26 26 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46325 * 299.99957 * 1 2 3 28 28 H 1.08002 * 120.40955 * 180.02562 * 5 4 3 29 29 H 1.08006 * 120.73470 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46956 * 335.00401 * 8 7 6 31 31 H 1.08997 * 109.47174 * 215.00370 * 8 7 6 32 32 H 0.96996 * 120.00419 * 0.02562 * 9 8 7 33 33 H 1.08003 * 119.92178 * 359.97438 * 11 10 9 34 34 H 1.08007 * 120.08377 * 179.74254 * 12 11 10 35 35 H 0.96992 * 120.00260 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.08024 * 179.71686 * 22 13 12 37 37 H 1.08005 * 119.91675 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3078 2.3065 0.0005 5 6 1.8761 3.5011 0.0000 6 6 3.2593 3.5914 -0.0005 7 6 3.9988 2.4195 -0.0010 8 6 5.5050 2.4680 -0.0022 9 7 5.9979 2.3634 1.3734 10 6 7.3634 2.3858 1.6252 11 6 7.8294 2.2854 2.9369 12 6 9.1684 2.3118 3.1920 13 6 10.0827 2.4302 2.1267 14 6 11.4705 2.4529 2.3827 15 1 11.8618 1.9950 3.2791 16 6 12.3390 3.0683 1.4753 17 7 11.8712 3.9133 0.5917 18 14 14.1665 2.6845 1.5244 19 1 14.3738 1.2327 1.2911 20 1 14.8639 3.4607 0.4679 21 1 14.7146 3.0555 2.8537 22 6 9.6050 2.5315 0.8052 23 6 8.2631 2.5089 0.5654 24 7 3.3661 1.2575 -0.0057 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8901 28 1 1.2698 4.3949 0.0009 29 1 3.7496 4.5537 -0.0013 30 1 5.8379 3.4107 -0.4368 31 1 5.8948 1.6384 -0.5920 32 1 5.3706 2.2786 2.1083 33 1 7.1274 2.1911 3.7523 34 1 9.5275 2.2382 4.2080 35 1 12.4734 4.3404 -0.0373 36 1 10.3001 2.6272 -0.0158 37 1 7.8954 2.5869 -0.4471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395119293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = 46.868339 kcal Electronic energy + Delta-G solvation = -20661.606869 eV Core-core repulsion = 17404.710459 eV Total energy + Delta-G solvation = -3256.896410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44344 -38.68893 -37.90059 -35.51130 -33.96273 -32.90970 -31.63713 -29.46905 -28.97484 -27.81342 -26.72177 -24.29374 -23.93474 -22.67643 -20.99241 -20.00414 -18.63231 -18.04980 -17.20378 -16.64738 -16.33521 -15.86464 -15.13450 -15.01044 -14.89958 -14.35359 -14.05976 -13.80380 -13.44229 -13.07755 -12.65920 -12.46551 -12.24354 -11.87317 -11.68957 -11.60655 -11.34801 -11.25904 -11.04148 -10.99043 -10.74565 -10.47245 -9.71316 -9.39367 -9.31685 -9.23826 -9.20448 -8.56707 -7.49437 -6.64666 -6.41642 -4.03757 0.73167 0.83823 2.34036 2.93228 3.10586 3.15003 3.18468 3.36064 3.48532 3.77216 4.05997 4.16239 4.42503 4.49695 4.76698 4.85652 4.92900 4.96956 4.99625 5.26370 5.38632 5.72154 5.77227 5.86566 5.94370 6.26783 6.31087 6.56391 6.87500 6.92993 6.93611 7.19782 7.35504 7.52422 7.68446 7.82368 7.88357 8.15114 8.26534 8.46006 8.64156 8.77942 9.06218 9.14625 10.37421 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.002756 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.675850 B =10155.509628 C =10310.371674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.290 6.290 3 C 0.496 3.504 4 N -0.571 5.571 5 C 0.183 3.817 6 C -0.251 4.251 7 C 0.210 3.790 8 C 0.187 3.813 9 N -0.753 5.753 10 C 0.091 3.909 11 C -0.154 4.154 12 C -0.187 4.187 13 C 0.076 3.924 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.807 5.807 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.125 4.125 23 C -0.162 4.162 24 N -0.510 5.510 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.385 0.615 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.277 0.723 36 H 0.119 0.881 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.475 -0.248 -3.533 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.191 6.191 3 C 0.193 3.807 4 N -0.301 5.301 5 C 0.018 3.982 6 C -0.274 4.274 7 C 0.063 3.937 8 C 0.061 3.939 9 N -0.390 5.390 10 C -0.006 4.006 11 C -0.176 4.176 12 C -0.207 4.207 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.434 5.434 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.145 4.145 23 C -0.184 4.184 24 N -0.235 5.235 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.191 0.809 29 H 0.173 0.827 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.218 0.782 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.772 -1.299 -3.930 19.223 hybrid contribution 0.680 0.833 0.235 1.101 sum -18.092 -0.466 -3.695 18.472 Atomic orbital electron populations 1.22980 0.75805 1.03513 1.02721 1.86110 1.23228 1.22717 1.87051 1.20720 0.86103 0.84765 0.89094 1.68039 1.41566 0.99353 1.21172 1.22967 0.92559 0.94335 0.88293 1.22718 0.95937 1.01235 1.07477 1.21781 0.97436 0.86618 0.87835 1.19937 0.83867 1.02368 0.87695 1.43595 1.04207 1.87170 1.04030 1.17275 0.81692 1.07933 0.93659 1.19788 0.95509 1.09180 0.93128 1.20547 0.92083 1.10607 0.97487 1.17502 0.93009 0.91332 0.90822 1.19342 0.91486 1.32769 1.06191 0.90949 1.25797 1.00915 0.92951 0.94364 1.69840 1.37409 1.20030 1.16156 0.86460 0.82537 0.79563 0.78609 1.19065 1.20592 1.19278 1.20934 0.93149 1.02890 0.97523 1.20080 0.93816 1.09046 0.95418 1.67462 1.07438 1.30339 1.18306 0.91973 0.87892 0.91954 0.80932 0.82728 0.90724 0.90867 0.78235 0.89607 0.88986 0.91250 0.86298 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.37 10.36 101.05 1.05 1.42 16 2 O -0.29 -3.77 10.55 -18.06 -0.19 -3.96 16 3 C 0.50 6.93 8.49 -91.25 -0.77 6.16 16 4 N -0.57 -6.76 9.23 -14.73 -0.14 -6.89 16 5 C 0.18 1.74 11.30 -17.22 -0.19 1.54 16 6 C -0.25 -2.61 9.83 -39.32 -0.39 -3.00 16 7 C 0.21 2.84 6.19 -82.26 -0.51 2.33 16 8 C 0.19 2.79 5.24 -5.19 -0.03 2.76 16 9 N -0.75 -13.21 5.69 -59.67 -0.34 -13.54 16 10 C 0.09 1.96 6.67 -83.69 -0.56 1.40 16 11 C -0.15 -3.46 9.82 -39.77 -0.39 -3.85 16 12 C -0.19 -4.63 9.74 -39.27 -0.38 -5.01 16 13 C 0.08 2.06 5.57 -106.79 -0.60 1.46 16 14 C -0.47 -12.65 9.03 -37.87 -0.34 -13.00 16 15 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 16 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 17 N -0.81 -21.26 10.96 55.54 0.61 -20.65 16 18 Si 0.90 19.20 29.60 -169.99 -5.03 14.17 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 C -0.13 -3.25 8.64 -39.26 -0.34 -3.59 16 23 C -0.16 -3.72 9.23 -39.77 -0.37 -4.09 16 24 N -0.51 -7.83 10.40 -10.95 -0.11 -7.94 16 25 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.48 8.09 -51.92 -0.42 0.06 16 28 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 31 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.39 6.36 8.46 -40.82 -0.35 6.02 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 37 H 0.09 1.83 6.68 -52.48 -0.35 1.48 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -30.64 322.83 -8.59 -39.22 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.34 Total: 8.36 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.91 Total: -13.63 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.02 Total: -49.02 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.19 Total: -3.96 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.64 -8.59 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395119293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.092 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds