Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35455 * 117.00091 * 2 1 4 4 N 1.32331 * 119.19859 * 0.02562 * 3 2 1 5 5 C 1.32284 * 120.75951 * 180.02562 * 4 3 2 6 6 C 1.38613 * 119.17340 * 359.97438 * 5 4 3 7 7 C 1.38565 * 118.52136 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.41191 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46630 * 94.99949 * 8 7 6 10 10 C 1.38862 * 119.99395 * 180.02562 * 9 8 7 11 11 C 1.39568 * 119.83821 * 180.02562 * 10 9 8 12 12 C 1.36337 * 120.16064 * 180.25014 * 11 10 9 13 13 C 1.40885 * 119.83577 * 359.50735 * 12 11 10 14 14 C 1.41136 * 120.15703 * 180.25148 * 13 12 11 15 15 H 1.07994 * 119.99982 * 24.87913 * 14 13 12 16 16 C 1.39868 * 119.99700 * 204.88066 * 14 13 12 17 17 N 1.30905 * 120.00320 * 17.96337 * 16 14 13 18 18 Si 1.86807 * 119.99880 * 197.96241 * 16 14 13 19 19 H 1.48498 * 109.47058 * 59.99975 * 18 16 14 20 20 H 1.48494 * 109.47133 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47092 * 300.00264 * 18 16 14 22 22 C 1.40887 * 119.68702 * 0.50986 * 13 12 11 23 23 C 1.36336 * 119.83640 * 359.74041 * 22 13 12 24 24 N 1.32304 * 119.19187 * 180.28056 * 3 2 1 25 25 H 1.09003 * 109.47198 * 59.99366 * 1 2 3 26 26 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46325 * 299.99957 * 1 2 3 28 28 H 1.08002 * 120.40955 * 180.02562 * 5 4 3 29 29 H 1.08006 * 120.73470 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46956 * 335.00401 * 8 7 6 31 31 H 1.08997 * 109.47174 * 215.00370 * 8 7 6 32 32 H 0.96996 * 120.00419 * 0.02562 * 9 8 7 33 33 H 1.08003 * 119.92178 * 359.97438 * 11 10 9 34 34 H 1.08007 * 120.08377 * 179.74254 * 12 11 10 35 35 H 0.96992 * 120.00260 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.08024 * 179.71686 * 22 13 12 37 37 H 1.08005 * 119.91675 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3078 2.3065 0.0005 5 6 1.8761 3.5011 0.0000 6 6 3.2593 3.5914 -0.0005 7 6 3.9988 2.4195 -0.0010 8 6 5.5050 2.4680 -0.0022 9 7 5.9979 2.3634 1.3734 10 6 7.3634 2.3858 1.6252 11 6 7.8294 2.2854 2.9369 12 6 9.1684 2.3118 3.1920 13 6 10.0827 2.4302 2.1267 14 6 11.4705 2.4529 2.3827 15 1 11.8618 1.9950 3.2791 16 6 12.3390 3.0683 1.4753 17 7 11.8712 3.9133 0.5917 18 14 14.1665 2.6845 1.5244 19 1 14.3738 1.2327 1.2911 20 1 14.8639 3.4607 0.4679 21 1 14.7146 3.0555 2.8537 22 6 9.6050 2.5315 0.8052 23 6 8.2631 2.5089 0.5654 24 7 3.3661 1.2575 -0.0057 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8901 28 1 1.2698 4.3949 0.0009 29 1 3.7496 4.5537 -0.0013 30 1 5.8379 3.4107 -0.4368 31 1 5.8948 1.6384 -0.5920 32 1 5.3706 2.2786 2.1083 33 1 7.1274 2.1911 3.7523 34 1 9.5275 2.2382 4.2080 35 1 12.4734 4.3404 -0.0373 36 1 10.3001 2.6272 -0.0158 37 1 7.8954 2.5869 -0.4471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395119293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = 25.088977 kcal Electronic energy + Delta-G solvation = -20662.551293 eV Core-core repulsion = 17404.710459 eV Total energy + Delta-G solvation = -3257.840834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.34574 -39.86684 -39.36806 -36.97418 -35.33957 -34.37750 -32.73143 -31.33858 -30.61672 -28.58516 -28.06307 -25.86155 -24.98252 -23.85556 -22.74091 -21.74203 -19.56152 -19.13555 -18.98526 -17.92204 -17.46740 -16.84609 -16.81067 -16.36320 -15.82433 -15.63584 -15.20674 -14.94139 -14.78578 -14.52964 -14.38270 -14.02853 -13.60233 -13.44811 -13.04859 -12.87766 -12.72221 -12.62941 -12.35822 -12.26372 -12.19103 -11.90028 -11.56844 -11.16376 -11.06611 -10.36423 -10.29094 -10.08668 -9.38823 -8.53832 -8.19093 -5.99940 -0.20610 0.00218 1.12711 1.20476 1.41926 1.52023 1.52393 1.61396 2.28977 2.50295 2.85931 2.91563 3.06512 3.34053 3.57793 3.87064 4.01049 4.22995 4.37172 4.37254 4.44923 4.49650 4.51204 4.64439 4.68983 4.77668 5.04778 5.10773 5.12883 5.28544 5.46608 5.66894 5.68932 5.79949 5.96108 6.10343 6.20364 6.39333 6.64983 6.84885 6.97598 7.06749 7.10218 7.26059 8.49583 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.002756 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.675850 B =10155.509628 C =10310.371674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.314 6.314 3 C 0.480 3.520 4 N -0.570 5.570 5 C 0.191 3.809 6 C -0.238 4.238 7 C 0.192 3.808 8 C 0.188 3.812 9 N -0.744 5.744 10 C 0.112 3.888 11 C -0.162 4.162 12 C -0.197 4.197 13 C 0.037 3.963 14 C -0.506 4.506 15 H 0.067 0.933 16 C 0.033 3.967 17 N -0.838 5.838 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.144 4.144 23 C -0.169 4.169 24 N -0.548 5.548 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.182 0.818 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.393 0.607 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.283 0.717 36 H 0.101 0.899 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 0.669 -3.717 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.177 3.823 4 N -0.300 5.300 5 C 0.026 3.974 6 C -0.260 4.260 7 C 0.046 3.954 8 C 0.062 3.938 9 N -0.379 5.379 10 C 0.013 3.987 11 C -0.184 4.184 12 C -0.217 4.217 13 C 0.035 3.965 14 C -0.537 4.537 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.466 5.466 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.187 1.187 22 C -0.164 4.164 23 C -0.191 4.191 24 N -0.275 5.275 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.084 0.916 28 H 0.236 0.764 29 H 0.199 0.801 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.227 0.773 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.715 -0.386 -4.115 21.123 hybrid contribution 0.983 0.556 0.281 1.164 sum -19.731 0.171 -3.834 20.101 Atomic orbital electron populations 1.23252 0.73634 1.05351 1.03060 1.86077 1.25465 1.22970 1.87055 1.20871 0.85963 0.85611 0.89841 1.68156 1.41302 0.99640 1.20938 1.23779 0.92736 0.94879 0.85987 1.22994 0.96340 1.01093 1.05616 1.21573 0.96527 0.87482 0.89794 1.19988 0.85421 1.02578 0.85780 1.43606 1.02636 1.85906 1.05793 1.17349 0.83421 1.04881 0.93011 1.20064 0.95165 1.08705 0.94477 1.20742 0.93056 1.10551 0.97351 1.17829 0.93727 0.93159 0.91834 1.19565 0.92442 1.34551 1.07186 0.91479 1.26588 1.05376 0.92249 0.93706 1.69897 1.39124 1.20732 1.16886 0.85366 0.76732 0.79261 0.78961 1.18927 1.19383 1.18691 1.20882 0.94233 1.04465 0.96833 1.20255 0.92998 1.08846 0.97031 1.67305 1.08675 1.31730 1.19805 0.91481 0.85414 0.91633 0.76356 0.80063 0.89043 0.92256 0.77331 0.86803 0.88547 0.90679 0.88080 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.36 113.37 1.17 1.79 16 2 O -0.31 -7.95 10.55 -87.53 -0.92 -8.87 16 3 C 0.48 12.85 8.49 180.57 1.53 14.38 16 4 N -0.57 -12.05 9.23 -313.47 -2.89 -14.94 16 5 C 0.19 2.88 11.30 84.71 0.96 3.84 16 6 C -0.24 -4.13 9.83 22.44 0.22 -3.91 16 7 C 0.19 4.81 6.19 42.57 0.26 5.07 16 8 C 0.19 5.28 5.24 85.63 0.45 5.73 16 9 N -0.74 -24.69 5.69 -342.69 -1.95 -26.64 16 10 C 0.11 4.72 6.67 38.67 0.26 4.98 16 11 C -0.16 -7.14 9.82 22.15 0.22 -6.92 16 12 C -0.20 -9.90 9.74 22.47 0.22 -9.68 16 13 C 0.04 2.08 5.57 -21.27 -0.12 1.96 16 14 C -0.51 -28.48 9.03 23.38 0.21 -28.27 16 15 H 0.07 3.67 7.91 -2.91 -0.02 3.64 16 16 C 0.03 1.74 5.13 85.23 0.44 2.18 16 17 N -0.84 -45.35 10.96 21.82 0.24 -45.11 16 18 Si 0.98 40.08 29.60 68.60 2.03 42.11 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 C -0.14 -7.71 8.64 22.47 0.19 -7.51 16 23 C -0.17 -7.78 9.23 22.14 0.20 -7.57 16 24 N -0.55 -16.36 10.40 -301.52 -3.14 -19.49 16 25 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 26 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 0.91 8.09 -2.38 -0.02 0.89 16 28 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 29 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.09 2.29 7.84 -2.38 -0.02 2.27 16 31 H 0.06 1.85 7.93 -2.39 -0.02 1.83 16 32 H 0.39 12.10 8.46 -92.71 -0.78 11.31 16 33 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 35 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 36 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 37 H 0.11 4.48 6.68 -2.91 -0.02 4.46 16 Total: -1.00 -68.89 322.83 -0.10 -68.99 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.32 Total: 27.91 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 6.22 Total: -23.94 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -7.74 Total: -106.19 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.92 Total: -8.87 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -68.89 -0.10 -68.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395119293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.074 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds