Wall clock time and date at job start Tue Mar 31 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48501 * 109.46913 * 239.99634 * 3 2 1 5 5 H 1.48506 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47312 * 119.99753 * 3 2 1 7 7 C 1.37875 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49461 * 299.93378 * 9 7 2 11 11 C 1.53040 * 109.49819 * 59.99418 * 9 7 2 12 12 C 1.53033 * 109.54167 * 181.31812 * 11 9 7 13 13 C 1.53199 * 109.31308 * 298.63755 * 12 11 9 14 14 N 1.46922 * 108.77234 * 54.63295 * 13 12 11 15 15 C 1.34775 * 120.63025 * 126.37127 * 14 13 12 16 16 O 1.21276 * 120.00204 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00059 * 359.97438 * 15 14 13 18 18 H 1.09006 * 112.83383 * 51.61331 * 17 15 14 19 19 C 1.52261 * 113.59372 * 182.84508 * 17 15 14 20 20 C 1.50557 * 87.23569 * 114.58652 * 19 17 15 21 21 C 1.38815 * 147.30889 * 180.02562 * 20 19 17 22 22 C 1.38062 * 120.09219 * 179.97438 * 21 20 19 23 23 C 1.38231 * 119.98387 * 0.02880 * 22 21 20 24 24 C 1.38067 * 119.97787 * 359.96303 * 23 22 21 25 25 C 1.37715 * 92.76683 * 359.97438 * 20 19 17 26 26 C 1.46924 * 118.73869 * 306.64226 * 14 13 12 27 27 H 0.97004 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.45618 * 61.29721 * 11 9 7 29 29 H 1.09002 * 109.46530 * 301.34333 * 11 9 7 30 30 H 1.09006 * 109.50068 * 178.68772 * 12 11 9 31 31 H 1.09001 * 109.49665 * 58.58787 * 12 11 9 32 32 H 1.08996 * 109.58402 * 294.84538 * 13 12 11 33 33 H 1.08999 * 109.70331 * 174.48743 * 13 12 11 34 34 H 1.08997 * 113.58824 * 359.97438 * 19 17 15 35 35 H 1.09001 * 113.58985 * 229.17499 * 19 17 15 36 36 H 1.08000 * 119.94828 * 359.71225 * 21 20 19 37 37 H 1.08004 * 120.00869 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.01062 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.94792 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.58664 * 173.14508 * 26 14 13 41 41 H 1.08993 * 109.58811 * 293.56709 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5577 0.8908 11 6 0.3714 -2.5812 -1.2491 12 6 -0.4189 -3.8915 -1.2336 13 6 0.5571 -5.0722 -1.2511 14 7 1.4999 -4.9228 -0.1342 15 6 1.6766 -5.9215 0.7534 16 8 2.4581 -5.7862 1.6709 17 6 0.9031 -7.2064 0.6059 18 1 0.9832 -7.6361 -0.3927 19 6 1.1636 -8.2064 1.7242 20 6 -0.2764 -8.0238 2.1240 21 6 -1.2998 -8.3705 2.9954 22 6 -2.5530 -7.8099 2.8492 23 6 -2.7898 -6.9026 1.8336 24 6 -1.7726 -6.5568 0.9664 25 6 -0.5119 -7.1189 1.1130 26 6 2.2419 -3.6619 0.0002 27 1 -0.4850 0.8401 -0.0004 28 1 1.0003 -2.5469 -2.1388 29 1 -0.3211 -1.7395 -1.2616 30 1 -1.0626 -3.9386 -2.1121 31 1 -1.0294 -3.9375 -0.3318 32 1 1.1050 -5.0793 -2.1933 33 1 0.0060 -6.0062 -1.1417 34 1 1.8727 -7.8501 2.4714 35 1 1.3932 -9.2102 1.3669 36 1 -1.1166 -9.0829 3.7861 37 1 -3.3483 -8.0803 3.5282 38 1 -3.7700 -6.4641 1.7186 39 1 -1.9580 -5.8476 0.1733 40 1 2.8003 -3.6645 0.9363 41 1 2.9300 -3.5517 -0.8378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397582945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:18 Heat of formation + Delta-G solvation = 21.175193 kcal Electronic energy + Delta-G solvation = -22690.298062 eV Core-core repulsion = 19535.827857 eV Total energy + Delta-G solvation = -3154.470205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11190 -38.97070 -36.89010 -35.18923 -33.50055 -31.35386 -30.90231 -30.16003 -27.67184 -25.85334 -25.01623 -23.86977 -22.04378 -21.70372 -20.64376 -19.49911 -18.20026 -17.22963 -16.70624 -16.21205 -15.62293 -15.08450 -14.78654 -14.67069 -14.18139 -13.83897 -13.49397 -13.01968 -13.00398 -12.90226 -12.67267 -12.41211 -12.17202 -12.02295 -11.89741 -11.82068 -10.96857 -10.95577 -10.85119 -10.75574 -10.48595 -10.31569 -9.96781 -9.83315 -9.58590 -9.37876 -8.87070 -8.77183 -8.51597 -8.39040 -7.91641 -6.02392 -4.09654 1.29832 1.39027 2.93761 3.31149 3.35508 3.37780 3.48762 3.78330 4.22483 4.40708 4.42619 4.51617 4.84467 5.03326 5.09280 5.20107 5.26828 5.38309 5.56364 5.60868 5.62747 5.69792 5.77295 5.87594 5.98567 6.09670 6.12980 6.31338 6.37490 6.38324 6.47240 6.49812 6.64664 6.73774 6.80400 6.96076 6.98144 7.15390 7.31996 7.68102 7.90382 7.99257 8.06666 8.36272 8.60336 8.93746 9.55257 11.03139 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.004541 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.388833 B = 6164.798683 C = 6564.451893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.597 5.597 15 C 0.526 3.474 16 O -0.546 6.546 17 C -0.069 4.069 18 H 0.116 0.884 19 C -0.060 4.060 20 C -0.120 4.120 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.083 4.083 25 C -0.118 4.118 26 C 0.117 3.883 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -16.363 -0.832 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.328 5.328 15 C 0.312 3.688 16 O -0.424 6.424 17 C -0.090 4.090 18 H 0.134 0.866 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.004 4.004 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.509 -16.138 -0.357 16.760 hybrid contribution 0.202 1.048 -0.148 1.077 sum -4.307 -15.091 -0.504 15.701 Atomic orbital electron populations 1.69862 1.05903 1.26582 1.50425 1.24926 0.94848 0.99055 0.94896 0.86640 0.79596 0.82988 0.78682 1.20247 1.21302 1.20216 1.21034 0.92951 0.90278 1.51085 0.92529 1.18881 0.93010 0.91168 0.94819 0.95345 1.21625 0.99464 0.95337 0.98558 1.22021 0.97687 0.96676 1.00934 1.21776 0.91433 0.99188 0.89137 1.48237 1.41935 1.15775 1.26863 1.19904 0.82408 0.84485 0.81967 1.90649 1.37921 1.81328 1.32532 1.21164 0.91003 0.95368 1.01421 0.86577 1.21431 0.92719 0.98704 0.96793 1.21841 0.96301 0.97953 0.95865 1.20374 0.91864 1.00696 0.98825 1.20985 0.96469 0.97506 0.98364 1.20982 0.98947 0.98399 0.95495 1.20580 0.91084 0.98845 0.99612 1.21334 0.93478 0.98592 0.98476 1.21933 0.95173 0.81781 1.01525 0.92921 0.94564 0.88605 0.92447 0.92305 0.91874 0.91102 0.87278 0.88811 0.86417 0.85756 0.85561 0.85886 0.90304 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 11.31 55.43 0.63 -24.34 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 2.24 -91.88 -0.21 0.79 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.14 -2.37 6.02 -26.61 -0.16 -2.54 16 13 C 0.11 1.67 6.29 -3.71 -0.02 1.65 16 14 N -0.60 -11.15 2.98 -173.04 -0.52 -11.67 16 15 C 0.53 9.68 7.22 -10.99 -0.08 9.60 16 16 O -0.55 -11.89 15.10 5.56 0.08 -11.81 16 17 C -0.07 -0.96 2.89 -93.66 -0.27 -1.23 16 18 H 0.12 1.31 7.62 -51.93 -0.40 0.91 16 19 C -0.06 -0.75 7.69 -28.62 -0.22 -0.97 16 20 C -0.12 -1.62 7.42 -104.96 -0.78 -2.40 16 21 C -0.10 -1.20 10.06 -39.43 -0.40 -1.60 16 22 C -0.12 -1.30 10.04 -39.65 -0.40 -1.70 16 23 C -0.12 -1.45 10.04 -39.65 -0.40 -1.85 16 24 C -0.08 -1.14 9.88 -39.43 -0.39 -1.53 16 25 C -0.12 -1.70 6.22 -104.96 -0.65 -2.35 16 26 C 0.12 2.55 5.63 -3.94 -0.02 2.53 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.09 7.34 -51.93 -0.38 0.71 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.92 5.23 -51.93 -0.27 0.65 16 34 H 0.11 1.56 7.02 -51.93 -0.36 1.19 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.61 7.08 -52.48 -0.37 1.24 16 40 H 0.08 1.86 7.01 -51.93 -0.36 1.49 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -30.76 327.13 -10.22 -40.98 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.81 Total: 2.65 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -4.52 Total: -16.85 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.11 Total: -36.01 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.76 -10.22 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.154 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds