Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48501 * 109.46913 * 239.99634 * 3 2 1 5 5 H 1.48506 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47312 * 119.99753 * 3 2 1 7 7 C 1.37875 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49461 * 299.93378 * 9 7 2 11 11 C 1.53040 * 109.49819 * 59.99418 * 9 7 2 12 12 C 1.53033 * 109.54167 * 181.31812 * 11 9 7 13 13 C 1.53199 * 109.31308 * 298.63755 * 12 11 9 14 14 N 1.46922 * 108.77234 * 54.63295 * 13 12 11 15 15 C 1.34775 * 120.63025 * 126.37127 * 14 13 12 16 16 O 1.21276 * 120.00204 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00059 * 359.97438 * 15 14 13 18 18 H 1.09006 * 112.83383 * 51.61331 * 17 15 14 19 19 C 1.52261 * 113.59372 * 182.84508 * 17 15 14 20 20 C 1.50557 * 87.23569 * 114.58652 * 19 17 15 21 21 C 1.38815 * 147.30889 * 180.02562 * 20 19 17 22 22 C 1.38062 * 120.09219 * 179.97438 * 21 20 19 23 23 C 1.38231 * 119.98387 * 0.02880 * 22 21 20 24 24 C 1.38067 * 119.97787 * 359.96303 * 23 22 21 25 25 C 1.37715 * 92.76683 * 359.97438 * 20 19 17 26 26 C 1.46924 * 118.73869 * 306.64226 * 14 13 12 27 27 H 0.97004 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.45618 * 61.29721 * 11 9 7 29 29 H 1.09002 * 109.46530 * 301.34333 * 11 9 7 30 30 H 1.09006 * 109.50068 * 178.68772 * 12 11 9 31 31 H 1.09001 * 109.49665 * 58.58787 * 12 11 9 32 32 H 1.08996 * 109.58402 * 294.84538 * 13 12 11 33 33 H 1.08999 * 109.70331 * 174.48743 * 13 12 11 34 34 H 1.08997 * 113.58824 * 359.97438 * 19 17 15 35 35 H 1.09001 * 113.58985 * 229.17499 * 19 17 15 36 36 H 1.08000 * 119.94828 * 359.71225 * 21 20 19 37 37 H 1.08004 * 120.00869 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.01062 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.94792 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.58664 * 173.14508 * 26 14 13 41 41 H 1.08993 * 109.58811 * 293.56709 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5577 0.8908 11 6 0.3714 -2.5812 -1.2491 12 6 -0.4189 -3.8915 -1.2336 13 6 0.5571 -5.0722 -1.2511 14 7 1.4999 -4.9228 -0.1342 15 6 1.6766 -5.9215 0.7534 16 8 2.4581 -5.7862 1.6709 17 6 0.9031 -7.2064 0.6059 18 1 0.9832 -7.6361 -0.3927 19 6 1.1636 -8.2064 1.7242 20 6 -0.2764 -8.0238 2.1240 21 6 -1.2998 -8.3705 2.9954 22 6 -2.5530 -7.8099 2.8492 23 6 -2.7898 -6.9026 1.8336 24 6 -1.7726 -6.5568 0.9664 25 6 -0.5119 -7.1189 1.1130 26 6 2.2419 -3.6619 0.0002 27 1 -0.4850 0.8401 -0.0004 28 1 1.0003 -2.5469 -2.1388 29 1 -0.3211 -1.7395 -1.2616 30 1 -1.0626 -3.9386 -2.1121 31 1 -1.0294 -3.9375 -0.3318 32 1 1.1050 -5.0793 -2.1933 33 1 0.0060 -6.0062 -1.1417 34 1 1.8727 -7.8501 2.4714 35 1 1.3932 -9.2102 1.3669 36 1 -1.1166 -9.0829 3.7861 37 1 -3.3483 -8.0803 3.5282 38 1 -3.7700 -6.4641 1.7186 39 1 -1.9580 -5.8476 0.1733 40 1 2.8003 -3.6645 0.9363 41 1 2.9300 -3.5517 -0.8378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397582945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = 5.016675 kcal Electronic energy + Delta-G solvation = -22690.998748 eV Core-core repulsion = 19535.827857 eV Total energy + Delta-G solvation = -3155.170891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24640 -40.32719 -38.45728 -36.24288 -35.38345 -33.07601 -32.22883 -31.53476 -28.75469 -27.34881 -26.67696 -25.26070 -23.38008 -23.10053 -21.80773 -20.99872 -19.60629 -18.74840 -18.12148 -17.65745 -16.99231 -16.61981 -16.23923 -15.95703 -15.46159 -15.26311 -15.02291 -14.65352 -14.43582 -14.01259 -13.87911 -13.81023 -13.61423 -13.44603 -13.05054 -12.90297 -12.85570 -12.66955 -12.59580 -11.96219 -11.90816 -11.84933 -11.66341 -11.42491 -11.30955 -10.95482 -10.77443 -10.44445 -9.74360 -9.54971 -9.50792 -8.11806 -6.27372 0.33190 0.43915 1.40636 1.42221 1.49453 1.54291 2.06225 2.42810 2.81228 3.14709 3.18866 3.44005 3.46385 3.62790 4.04979 4.18664 4.20134 4.24293 4.27334 4.33864 4.51719 4.59519 4.65462 4.69582 4.79284 4.80775 4.85060 4.94711 4.96085 5.02022 5.10878 5.16711 5.26750 5.45638 5.46385 5.53812 5.57880 5.59658 5.75730 5.91354 6.06471 6.12193 6.32612 6.50872 6.81732 7.14461 7.40914 8.91825 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.004541 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.388833 B = 6164.798683 C = 6564.451893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.043 3.957 10 H -0.019 1.019 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.601 5.601 15 C 0.519 3.481 16 O -0.589 6.589 17 C -0.061 4.061 18 H 0.151 0.849 19 C -0.054 4.054 20 C -0.135 4.135 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.142 4.142 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.123 0.877 40 H 0.051 0.949 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -18.096 -1.798 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.071 0.929 9 C 0.024 3.976 10 H -0.001 1.001 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.332 5.332 15 C 0.308 3.692 16 O -0.470 6.470 17 C -0.082 4.082 18 H 0.169 0.831 19 C -0.091 4.091 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.146 4.146 24 C -0.119 4.119 25 C -0.143 4.143 26 C 0.006 3.994 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.141 0.859 40 H 0.069 0.931 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.333 -17.891 -1.345 18.717 hybrid contribution 0.398 1.598 0.231 1.663 sum -4.935 -16.292 -1.114 17.060 Atomic orbital electron populations 1.70003 1.07123 1.27298 1.50776 1.25681 0.95679 1.02257 0.94467 0.85661 0.78454 0.79002 0.78844 1.19152 1.20718 1.20222 1.21410 0.93087 0.91885 1.51484 0.92916 1.18772 0.93160 0.91676 0.94035 1.00068 1.21414 0.98772 0.96981 0.97108 1.21916 0.97820 0.94905 1.01797 1.21986 0.90774 0.99567 0.88872 1.48303 1.42201 1.14630 1.28015 1.20768 0.81964 0.85689 0.80812 1.90622 1.39895 1.82386 1.34135 1.21202 0.90195 0.92986 1.03811 0.83138 1.21435 0.91855 1.00009 0.95756 1.22088 0.96939 0.98262 0.96183 1.20745 0.91805 1.01004 0.98996 1.21392 0.97027 0.96488 0.98225 1.21327 0.99535 0.98453 0.95285 1.20780 0.91504 0.99241 1.00398 1.21444 0.93640 0.99704 0.99486 1.21499 0.94638 0.82747 1.00472 0.92907 0.94208 0.91876 0.89082 0.93810 0.89569 0.87733 0.89482 0.85295 0.84203 0.82792 0.83577 0.85880 0.93062 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.69 11.31 21.45 0.24 -52.45 16 2 C 0.02 1.03 5.30 84.65 0.45 1.47 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -30.33 8.56 25.60 0.22 -30.11 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 2.20 2.24 -11.61 -0.03 2.17 16 10 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 11 C -0.10 -4.73 4.96 30.62 0.15 -4.57 16 12 C -0.13 -4.30 6.02 30.67 0.18 -4.12 16 13 C 0.11 3.16 6.29 86.37 0.54 3.70 16 14 N -0.60 -22.32 2.98 -819.77 -2.44 -24.76 16 15 C 0.52 19.05 7.22 87.66 0.63 19.69 16 16 O -0.59 -26.50 15.10 -3.02 -0.05 -26.54 16 17 C -0.06 -1.61 2.89 -12.76 -0.04 -1.64 16 18 H 0.15 2.83 7.62 -2.38 -0.02 2.81 16 19 C -0.05 -1.27 7.69 29.37 0.23 -1.05 16 20 C -0.13 -3.43 7.42 -20.08 -0.15 -3.58 16 21 C -0.11 -2.35 10.06 22.37 0.22 -2.13 16 22 C -0.11 -2.27 10.04 22.23 0.22 -2.05 16 23 C -0.13 -2.85 10.04 22.23 0.22 -2.62 16 24 C -0.10 -2.63 9.88 22.37 0.22 -2.41 16 25 C -0.14 -3.86 6.22 -20.09 -0.12 -3.99 16 26 C 0.13 5.81 5.63 86.22 0.49 6.29 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 30 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.04 1.62 7.34 -2.39 -0.02 1.60 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.10 2.37 5.23 -2.39 -0.01 2.35 16 34 H 0.09 2.48 7.02 -2.39 -0.02 2.46 16 35 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.12 3.08 7.08 -2.91 -0.02 3.06 16 40 H 0.05 2.56 7.01 -2.38 -0.02 2.54 16 41 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -70.44 327.13 4.25 -66.18 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.02 Total: 16.59 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 3.45 Total: -24.95 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.20 Total: -77.21 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.44 4.25 -66.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.199 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds