Wall clock time and date at job start Tue Mar 31 2020 06:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00356 * 2 1 4 4 H 1.48504 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00116 * 3 2 1 6 6 H 1.48505 * 109.47026 * 60.00139 * 3 2 1 7 7 C 1.37879 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99900 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52356 * 300.08341 * 9 7 2 11 11 C 1.53070 * 109.62238 * 60.10710 * 9 7 2 12 12 C 1.53039 * 109.65812 * 181.16791 * 11 9 7 13 13 C 1.53191 * 109.31416 * 298.69913 * 12 11 9 14 14 N 1.46928 * 108.77343 * 54.63452 * 13 12 11 15 15 C 1.34784 * 120.62829 * 126.41175 * 14 13 12 16 16 O 1.21276 * 119.99470 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99966 * 359.97438 * 15 14 13 18 18 H 1.08998 * 112.83222 * 309.66896 * 17 15 14 19 19 C 1.53525 * 113.58513 * 178.55307 * 17 15 14 20 20 C 1.51605 * 87.24564 * 245.40996 * 19 17 15 21 21 C 1.38376 * 147.52608 * 180.02562 * 20 19 17 22 22 C 1.38099 * 120.32752 * 179.97438 * 21 20 19 23 23 C 1.38249 * 119.95073 * 0.02562 * 22 21 20 24 24 C 1.38089 * 119.95765 * 0.02562 * 23 22 21 25 25 C 1.38250 * 120.40880 * 359.92741 * 24 23 22 26 26 C 1.46919 * 118.73982 * 306.39079 * 14 13 12 27 27 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.35101 * 61.14545 * 11 9 7 29 29 H 1.09000 * 109.44413 * 301.25089 * 11 9 7 30 30 H 1.09002 * 109.49876 * 178.74890 * 12 11 9 31 31 H 1.09005 * 109.52615 * 58.67140 * 12 11 9 32 32 H 1.08998 * 109.58966 * 294.84519 * 13 12 11 33 33 H 1.09007 * 109.70227 * 174.48874 * 13 12 11 34 34 H 1.08994 * 113.58815 * 0.02562 * 19 17 15 35 35 H 1.09000 * 113.58604 * 130.73789 * 19 17 15 36 36 H 1.07994 * 119.84143 * 359.95668 * 21 20 19 37 37 H 1.07996 * 120.02015 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.01673 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.83195 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.58751 * 173.39743 * 26 14 13 41 41 H 1.08996 * 109.58750 * 293.67928 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6232 -2.5573 0.8886 11 6 0.3711 -2.5847 -1.2502 12 6 -0.4165 -3.8968 -1.2365 13 6 0.5620 -5.0754 -1.2527 14 7 1.5026 -4.9244 -0.1340 15 6 1.6805 -5.9234 0.7531 16 8 2.4602 -5.7866 1.6719 17 6 0.9106 -7.2102 0.6033 18 1 -0.1600 -7.0501 0.4758 19 6 1.2521 -8.2583 1.6718 20 6 1.8183 -9.1089 0.5518 21 6 2.4328 -10.2919 0.1807 22 6 2.7394 -10.5326 -1.1442 23 6 2.4324 -9.5885 -2.1062 24 6 1.8201 -8.4058 -1.7412 25 6 1.5094 -8.1584 -0.4169 26 6 2.2458 -3.6641 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 1.0014 -2.5489 -2.1388 29 1 -0.3232 -1.7446 -1.2634 30 1 -1.0586 -3.9450 -2.1160 31 1 -1.0289 -3.9447 -0.3360 32 1 1.1115 -5.0812 -2.1939 33 1 0.0126 -6.0107 -1.1445 34 1 2.0026 -7.9230 2.3875 35 1 0.3755 -8.6937 2.1515 36 1 2.6741 -11.0304 0.9307 37 1 3.2193 -11.4574 -1.4282 38 1 2.6721 -9.7755 -3.1426 39 1 1.5816 -7.6694 -2.4944 40 1 2.8058 -3.6669 0.9340 41 1 2.9345 -3.5559 -0.8391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397582948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:20 Heat of formation + Delta-G solvation = 19.322952 kcal Electronic energy + Delta-G solvation = -22381.768833 eV Core-core repulsion = 19227.218308 eV Total energy + Delta-G solvation = -3154.550524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95541 -38.99874 -36.86148 -35.14358 -33.49873 -31.38535 -30.93229 -30.22494 -27.72491 -25.87737 -25.02682 -23.88527 -22.09697 -21.65493 -20.79725 -19.44664 -18.25815 -17.24163 -16.71659 -16.27185 -15.62829 -15.13984 -14.86519 -14.59774 -14.16308 -13.90452 -13.48614 -13.23013 -13.08422 -12.81323 -12.67991 -12.50618 -12.10395 -12.07518 -11.96094 -11.82219 -11.04977 -10.98402 -10.86552 -10.72144 -10.55644 -10.28919 -9.97843 -9.84307 -9.59576 -9.39611 -8.92412 -8.84562 -8.56587 -8.40458 -7.92237 -6.03536 -4.10450 1.18649 1.30455 2.91221 3.28024 3.36125 3.39674 3.46982 3.69866 4.12908 4.30164 4.41419 4.45545 4.83270 4.92205 4.99493 5.16807 5.26472 5.40136 5.48708 5.51715 5.60264 5.62998 5.75742 5.81170 5.93174 6.05119 6.10158 6.28107 6.31281 6.37569 6.38380 6.46272 6.63887 6.65314 6.78572 6.88082 6.94979 7.14611 7.31229 7.67739 7.89103 7.98298 8.05753 8.35570 8.59598 8.93411 9.54606 11.02120 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.003813 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.290081 B = 7342.212074 C = 7541.376358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.597 5.597 15 C 0.526 3.474 16 O -0.546 6.546 17 C -0.068 4.068 18 H 0.119 0.881 19 C -0.058 4.058 20 C -0.118 4.118 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.087 4.087 25 C -0.118 4.118 26 C 0.116 3.884 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -18.566 -3.873 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.013 4.013 14 N -0.328 5.328 15 C 0.313 3.687 16 O -0.424 6.424 17 C -0.089 4.089 18 H 0.137 0.863 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.004 4.004 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.233 -18.351 -3.409 18.667 hybrid contribution 0.321 0.950 -0.289 1.043 sum 0.088 -17.402 -3.698 17.790 Atomic orbital electron populations 1.69883 1.05894 1.26377 1.50607 1.24936 0.94862 0.99100 0.94922 0.86521 0.80206 0.83646 0.77554 1.19719 1.21043 1.21009 1.21112 0.93041 0.90246 1.50800 0.92414 1.18980 0.92923 0.91144 0.94838 0.95229 1.21634 0.99478 0.95320 0.98613 1.22012 0.97624 0.96673 1.01034 1.21765 0.91378 0.99014 0.89178 1.48239 1.42045 1.15730 1.26777 1.19875 0.82704 0.84111 0.82056 1.90650 1.37644 1.81310 1.32803 1.21565 1.00853 0.92546 0.93942 0.86328 1.21823 1.01244 0.91106 0.95276 1.22334 0.97644 0.94327 0.97546 1.20280 0.99301 0.96100 0.96037 1.20993 1.00344 0.99440 0.92622 1.20964 0.99689 0.93777 0.99538 1.20335 0.98491 0.97232 0.94413 1.21804 1.00123 0.96359 0.93546 1.22021 0.95130 0.81735 1.01545 0.93029 0.94587 0.88623 0.92406 0.92317 0.91982 0.91144 0.87222 0.88650 0.86403 0.85736 0.85628 0.86265 0.90274 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 11.33 55.43 0.63 -24.19 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.88 8.57 -34.44 -0.30 -14.18 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.99 2.25 -91.63 -0.21 0.78 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.50 4.96 -26.67 -0.13 -2.63 16 12 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C 0.11 1.70 6.29 -3.71 -0.02 1.68 16 14 N -0.60 -11.13 2.97 -172.77 -0.51 -11.65 16 15 C 0.53 9.65 7.23 -10.98 -0.08 9.57 16 16 O -0.55 -11.85 15.12 5.56 0.08 -11.77 16 17 C -0.07 -0.95 2.94 -92.22 -0.27 -1.22 16 18 H 0.12 1.41 7.29 -51.93 -0.38 1.03 16 19 C -0.06 -0.72 7.77 -27.18 -0.21 -0.93 16 20 C -0.12 -1.52 7.49 -103.79 -0.78 -2.29 16 21 C -0.10 -1.10 10.03 -39.58 -0.40 -1.50 16 22 C -0.12 -1.16 10.04 -39.63 -0.40 -1.56 16 23 C -0.12 -1.27 10.04 -39.63 -0.40 -1.66 16 24 C -0.09 -1.04 10.02 -39.63 -0.40 -1.44 16 25 C -0.12 -1.58 6.68 -103.83 -0.69 -2.27 16 26 C 0.12 2.54 5.65 -3.71 -0.02 2.52 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 2.41 6.06 -51.93 -0.31 2.09 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.90 5.65 -51.92 -0.29 0.61 16 34 H 0.11 1.54 7.04 -51.93 -0.37 1.17 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 40 H 0.08 1.86 7.01 -51.93 -0.36 1.49 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -30.55 329.95 -10.32 -40.86 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.91 Total: 1.76 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -4.56 Total: -16.03 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.11 Total: -35.84 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.55 -10.32 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.184 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds