Wall clock time and date at job start Tue Mar 31 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00356 * 2 1 4 4 H 1.48504 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00116 * 3 2 1 6 6 H 1.48505 * 109.47026 * 60.00139 * 3 2 1 7 7 C 1.37879 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99900 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52356 * 300.08341 * 9 7 2 11 11 C 1.53070 * 109.62238 * 60.10710 * 9 7 2 12 12 C 1.53039 * 109.65812 * 181.16791 * 11 9 7 13 13 C 1.53191 * 109.31416 * 298.69913 * 12 11 9 14 14 N 1.46928 * 108.77343 * 54.63452 * 13 12 11 15 15 C 1.34784 * 120.62829 * 126.41175 * 14 13 12 16 16 O 1.21276 * 119.99470 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99966 * 359.97438 * 15 14 13 18 18 H 1.08998 * 112.83222 * 309.66896 * 17 15 14 19 19 C 1.53525 * 113.58513 * 178.55307 * 17 15 14 20 20 C 1.51605 * 87.24564 * 245.40996 * 19 17 15 21 21 C 1.38376 * 147.52608 * 180.02562 * 20 19 17 22 22 C 1.38099 * 120.32752 * 179.97438 * 21 20 19 23 23 C 1.38249 * 119.95073 * 0.02562 * 22 21 20 24 24 C 1.38089 * 119.95765 * 0.02562 * 23 22 21 25 25 C 1.38250 * 120.40880 * 359.92741 * 24 23 22 26 26 C 1.46919 * 118.73982 * 306.39079 * 14 13 12 27 27 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.35101 * 61.14545 * 11 9 7 29 29 H 1.09000 * 109.44413 * 301.25089 * 11 9 7 30 30 H 1.09002 * 109.49876 * 178.74890 * 12 11 9 31 31 H 1.09005 * 109.52615 * 58.67140 * 12 11 9 32 32 H 1.08998 * 109.58966 * 294.84519 * 13 12 11 33 33 H 1.09007 * 109.70227 * 174.48874 * 13 12 11 34 34 H 1.08994 * 113.58815 * 0.02562 * 19 17 15 35 35 H 1.09000 * 113.58604 * 130.73789 * 19 17 15 36 36 H 1.07994 * 119.84143 * 359.95668 * 21 20 19 37 37 H 1.07996 * 120.02015 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.01673 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.83195 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.58751 * 173.39743 * 26 14 13 41 41 H 1.08996 * 109.58750 * 293.67928 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6232 -2.5573 0.8886 11 6 0.3711 -2.5847 -1.2502 12 6 -0.4165 -3.8968 -1.2365 13 6 0.5620 -5.0754 -1.2527 14 7 1.5026 -4.9244 -0.1340 15 6 1.6805 -5.9234 0.7531 16 8 2.4602 -5.7866 1.6719 17 6 0.9106 -7.2102 0.6033 18 1 -0.1600 -7.0501 0.4758 19 6 1.2521 -8.2583 1.6718 20 6 1.8183 -9.1089 0.5518 21 6 2.4328 -10.2919 0.1807 22 6 2.7394 -10.5326 -1.1442 23 6 2.4324 -9.5885 -2.1062 24 6 1.8201 -8.4058 -1.7412 25 6 1.5094 -8.1584 -0.4169 26 6 2.2458 -3.6641 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 1.0014 -2.5489 -2.1388 29 1 -0.3232 -1.7446 -1.2634 30 1 -1.0586 -3.9450 -2.1160 31 1 -1.0289 -3.9447 -0.3360 32 1 1.1115 -5.0812 -2.1939 33 1 0.0126 -6.0107 -1.1445 34 1 2.0026 -7.9230 2.3875 35 1 0.3755 -8.6937 2.1515 36 1 2.6741 -11.0304 0.9307 37 1 3.2193 -11.4574 -1.4282 38 1 2.6721 -9.7755 -3.1426 39 1 1.5816 -7.6694 -2.4944 40 1 2.8058 -3.6669 0.9340 41 1 2.9345 -3.5559 -0.8391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397582948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:19 Heat of formation + Delta-G solvation = 3.543758 kcal Electronic energy + Delta-G solvation = -22382.453070 eV Core-core repulsion = 19227.218308 eV Total energy + Delta-G solvation = -3155.234762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05919 -40.29584 -38.41978 -36.12816 -35.37254 -33.08377 -32.14250 -31.60975 -28.73504 -27.34296 -26.68209 -25.24641 -23.41372 -22.98343 -21.88463 -20.90311 -19.67777 -18.70637 -18.12770 -17.65462 -16.93309 -16.68063 -16.22066 -15.84783 -15.33261 -15.30237 -15.08803 -14.67517 -14.48455 -13.99368 -13.87678 -13.70508 -13.64062 -13.47352 -13.02532 -12.92986 -12.86991 -12.67795 -12.54553 -11.99606 -11.86882 -11.86173 -11.63832 -11.43960 -11.27059 -10.94620 -10.77332 -10.44814 -9.76353 -9.53760 -9.48893 -8.12018 -6.27015 0.32940 0.47101 1.39160 1.41424 1.51694 1.53834 2.05669 2.42973 2.82934 3.14534 3.14895 3.40206 3.43173 3.61423 4.03075 4.18899 4.22426 4.23983 4.28506 4.34095 4.51454 4.57947 4.65266 4.73179 4.78892 4.82413 4.84118 4.94117 4.95672 5.00521 5.10190 5.17081 5.26778 5.45948 5.48892 5.53534 5.58788 5.60275 5.77109 5.91654 6.07689 6.11841 6.33083 6.50176 6.82113 7.13837 7.41166 8.91997 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.003813 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.290081 B = 7342.212074 C = 7541.376358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.012 1.012 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.112 3.888 14 N -0.601 5.601 15 C 0.519 3.481 16 O -0.589 6.589 17 C -0.063 4.063 18 H 0.142 0.858 19 C -0.056 4.056 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.098 4.098 25 C -0.139 4.139 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.130 0.870 40 H 0.052 0.948 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -20.675 -5.712 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.006 0.994 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.331 5.331 15 C 0.308 3.692 16 O -0.471 6.471 17 C -0.084 4.084 18 H 0.160 0.840 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.116 4.116 25 C -0.139 4.139 26 C 0.007 3.993 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.070 0.930 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.423 -20.480 -5.268 21.151 hybrid contribution 0.407 1.565 0.290 1.643 sum -0.016 -18.915 -4.978 19.559 Atomic orbital electron populations 1.70010 1.07044 1.27180 1.50883 1.25677 0.95709 1.02232 0.94523 0.85548 0.78997 0.79643 0.77719 1.19417 1.20078 1.20814 1.21453 0.93036 0.91911 1.51274 0.93080 1.18876 0.93088 0.91477 0.94276 0.99383 1.21426 0.98770 0.97050 0.97107 1.21920 0.97741 0.94761 1.02098 1.21966 0.90692 0.99578 0.88701 1.48305 1.42325 1.14579 1.27940 1.20739 0.82298 0.85248 0.80883 1.90622 1.39644 1.82327 1.34476 1.21545 1.01261 0.90084 0.95514 0.84042 1.21808 1.01807 0.90852 0.94776 1.22452 0.98631 0.95234 0.97264 1.20621 0.98797 0.95959 0.97253 1.21417 0.99269 1.00407 0.92008 1.21355 0.98636 0.93077 1.01081 1.20615 0.98645 0.98266 0.94079 1.21782 1.01660 0.96161 0.94346 1.21570 0.94603 0.82810 1.00320 0.92893 0.94457 0.91812 0.89054 0.93413 0.90192 0.87523 0.89522 0.85899 0.84593 0.82756 0.82961 0.85187 0.92956 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.22 11.33 21.45 0.24 -51.98 16 2 C 0.02 0.99 5.30 84.66 0.45 1.44 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.54 -30.15 8.57 25.60 0.22 -29.93 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 2.14 2.25 -11.45 -0.03 2.12 16 10 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 11 C -0.11 -4.74 4.96 30.63 0.15 -4.58 16 12 C -0.13 -4.28 6.08 30.67 0.19 -4.09 16 13 C 0.11 3.24 6.29 86.36 0.54 3.78 16 14 N -0.60 -22.39 2.97 -818.91 -2.44 -24.83 16 15 C 0.52 19.20 7.23 87.66 0.63 19.83 16 16 O -0.59 -26.67 15.12 -3.02 -0.05 -26.71 16 17 C -0.06 -1.68 2.94 -11.83 -0.03 -1.72 16 18 H 0.14 3.02 7.29 -2.39 -0.02 3.00 16 19 C -0.06 -1.34 7.77 30.30 0.24 -1.11 16 20 C -0.14 -3.24 7.49 -19.33 -0.14 -3.39 16 21 C -0.11 -2.13 10.03 22.27 0.22 -1.90 16 22 C -0.11 -1.87 10.04 22.24 0.22 -1.65 16 23 C -0.12 -2.14 10.04 22.24 0.22 -1.91 16 24 C -0.10 -2.08 10.02 22.24 0.22 -1.85 16 25 C -0.14 -3.43 6.68 -19.35 -0.13 -3.56 16 26 C 0.13 5.85 5.65 86.36 0.49 6.34 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 3.29 6.06 -2.39 -0.01 3.27 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.11 2.36 5.65 -2.38 -0.01 2.35 16 34 H 0.09 2.50 7.04 -2.39 -0.02 2.48 16 35 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.05 2.61 7.01 -2.39 -0.02 2.59 16 41 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -69.67 329.95 4.27 -65.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.02 Total: 14.42 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.47 Total: -22.19 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.19 Total: -76.81 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.67 4.27 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.946 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds