Wall clock time and date at job start Tue Mar 31 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47241 * 240.00195 * 3 2 1 5 5 H 1.48499 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47075 * 119.99913 * 3 2 1 7 7 C 1.37872 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99849 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.49862 * 60.06902 * 9 7 2 11 11 C 1.53037 * 109.49857 * 299.99942 * 9 7 2 12 12 C 1.53045 * 109.54044 * 178.65432 * 11 9 7 13 13 C 1.53190 * 109.31350 * 61.36615 * 12 11 9 14 14 N 1.46930 * 108.77467 * 305.36869 * 13 12 11 15 15 C 1.34776 * 120.63015 * 233.59035 * 14 13 12 16 16 O 1.21281 * 119.99860 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99885 * 359.97438 * 15 14 13 18 18 H 1.09002 * 112.83084 * 309.67387 * 17 15 14 19 19 C 1.53520 * 113.58448 * 178.55826 * 17 15 14 20 20 C 1.51613 * 87.24778 * 245.33131 * 19 17 15 21 21 C 1.38374 * 147.52838 * 179.97438 * 20 19 17 22 22 C 1.38580 * 120.16153 * 180.09237 * 21 20 19 23 23 C 1.38245 * 120.03124 * 359.97056 * 22 21 20 24 24 C 1.38090 * 119.95744 * 0.02562 * 23 22 21 25 25 C 1.38368 * 120.32998 * 359.97438 * 24 23 22 26 26 C 1.46931 * 118.74060 * 53.85696 * 14 13 12 27 27 H 0.97005 * 119.99927 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.45919 * 58.62904 * 11 9 7 29 29 H 1.09003 * 109.46544 * 298.67362 * 11 9 7 30 30 H 1.09001 * 109.49118 * 301.41696 * 12 11 9 31 31 H 1.09002 * 109.49584 * 181.32189 * 12 11 9 32 32 H 1.08994 * 109.58932 * 185.58019 * 13 12 11 33 33 H 1.08993 * 109.70557 * 65.22068 * 13 12 11 34 34 H 1.08994 * 113.59319 * 359.92921 * 19 17 15 35 35 H 1.09003 * 113.58517 * 130.74106 * 19 17 15 36 36 H 1.07996 * 119.83515 * 0.02562 * 21 20 19 37 37 H 1.07997 * 119.94659 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.01949 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.83691 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.58029 * 65.92908 * 26 14 13 41 41 H 1.08993 * 109.58722 * 186.35380 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5576 -0.8907 11 6 0.3714 -2.5811 1.2491 12 6 -0.4197 -3.8912 1.2333 13 6 0.5558 -5.0722 1.2504 14 7 1.4987 -4.9230 0.1334 15 6 1.6755 -5.9218 -0.7541 16 8 2.4571 -5.7865 -1.6715 17 6 0.9028 -7.2071 -0.6057 18 1 0.9655 -7.6247 0.3991 19 6 1.1913 -8.2287 -1.7148 20 6 -0.2513 -8.0564 -2.1480 21 6 -1.2563 -8.4144 -3.0293 22 6 -2.5176 -7.8525 -2.9125 23 6 -2.7752 -6.9322 -1.9136 24 6 -1.7747 -6.5727 -1.0323 25 6 -0.5129 -7.1297 -1.1429 26 6 2.2496 -3.6665 0.0058 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3207 -1.7391 1.2619 29 1 1.0003 -2.5474 2.1388 30 1 -1.0301 -3.9365 0.3314 31 1 -1.0633 -3.9381 2.1117 32 1 0.0026 -6.0047 1.1394 33 1 1.1040 -5.0825 2.1923 34 1 1.9132 -7.8792 -2.4528 35 1 1.4180 -9.2269 -1.3400 36 1 -1.0554 -9.1329 -3.8102 37 1 -3.2993 -8.1341 -3.6024 38 1 -3.7584 -6.4946 -1.8225 39 1 -1.9782 -5.8539 -0.2524 40 1 2.9328 -3.5620 0.8486 41 1 2.8141 -3.6713 -0.9266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397582950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:23 Heat of formation + Delta-G solvation = 19.314225 kcal Electronic energy + Delta-G solvation = -22656.019651 eV Core-core repulsion = 19501.468748 eV Total energy + Delta-G solvation = -3154.550903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89986 -38.92754 -36.85408 -35.06004 -33.48900 -31.35418 -30.89429 -30.13869 -27.65280 -25.84475 -25.01505 -23.85069 -21.99757 -21.70298 -20.66518 -19.50684 -18.19686 -17.20370 -16.67400 -16.19997 -15.60554 -15.06893 -14.78464 -14.66422 -14.17776 -13.83265 -13.49102 -13.00685 -12.98077 -12.90506 -12.67141 -12.39585 -12.16790 -12.01876 -11.87573 -11.81835 -10.97018 -10.95737 -10.85591 -10.75065 -10.45775 -10.31696 -9.96497 -9.82803 -9.58510 -9.37707 -8.87101 -8.78844 -8.49160 -8.39010 -7.91222 -6.02268 -4.09519 1.28049 1.40852 2.92728 3.31191 3.35577 3.37805 3.48501 3.78162 4.18936 4.38519 4.42357 4.48442 4.84215 5.03640 5.08621 5.19904 5.26881 5.38052 5.54931 5.61503 5.63494 5.69350 5.77200 5.86394 5.98321 6.09676 6.12514 6.31609 6.37775 6.38369 6.46343 6.49723 6.64445 6.73164 6.79703 6.94851 6.98254 7.15508 7.32029 7.68182 7.90365 7.99222 8.06540 8.36534 8.60286 8.93818 9.55367 11.03199 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.004511 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.904245 B = 6205.216887 C = 6598.125461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.597 5.597 15 C 0.525 3.475 16 O -0.546 6.546 17 C -0.068 4.068 18 H 0.116 0.884 19 C -0.057 4.057 20 C -0.121 4.121 21 C -0.100 4.100 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.083 4.083 25 C -0.118 4.118 26 C 0.116 3.884 27 H 0.261 0.739 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.056 0.944 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 -16.419 0.792 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.328 5.328 15 C 0.312 3.688 16 O -0.424 6.424 17 C -0.089 4.089 18 H 0.134 0.866 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.005 4.005 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.436 -16.192 0.316 16.792 hybrid contribution 0.203 1.047 0.148 1.077 sum -4.233 -15.145 0.464 15.733 Atomic orbital electron populations 1.69863 1.05901 1.26580 1.50447 1.24926 0.94850 0.99054 0.94906 0.86641 0.79596 0.82994 0.78679 1.20218 1.21306 1.20251 1.21042 0.92967 0.90310 1.51052 0.92532 1.19033 0.92858 0.91068 0.94790 0.95276 1.21631 0.99458 0.95346 0.98570 1.22015 0.97674 0.96666 1.00930 1.21770 0.91418 0.99194 0.89121 1.48249 1.41677 1.15995 1.26925 1.19906 0.82417 0.84456 0.82021 1.90650 1.37942 1.81316 1.32522 1.21552 0.90827 0.95234 1.01276 0.86601 1.21806 0.92605 0.98414 0.96540 1.22297 0.96297 0.97752 0.95747 1.20377 0.91958 1.00732 0.98744 1.21101 0.96315 0.97445 0.98505 1.20982 0.99015 0.98284 0.95486 1.20439 0.91194 0.98968 0.99546 1.21763 0.93399 0.98372 0.98360 1.22123 0.95034 0.81865 1.01485 0.92923 0.88604 0.94570 0.92317 0.92451 0.91136 0.91869 0.87309 0.88805 0.86431 0.85756 0.85543 0.85972 0.92571 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 11.31 55.43 0.63 -24.35 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.98 8.57 -34.44 -0.30 -14.28 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.03 2.26 -91.43 -0.21 0.82 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 12 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C 0.11 1.68 6.30 -3.71 -0.02 1.65 16 14 N -0.60 -11.15 2.97 -172.50 -0.51 -11.66 16 15 C 0.53 9.67 7.24 -10.99 -0.08 9.59 16 16 O -0.55 -11.89 15.12 5.56 0.08 -11.80 16 17 C -0.07 -0.95 2.92 -92.22 -0.27 -1.22 16 18 H 0.12 1.30 7.56 -51.93 -0.39 0.91 16 19 C -0.06 -0.72 7.77 -27.18 -0.21 -0.93 16 20 C -0.12 -1.64 7.49 -103.79 -0.78 -2.42 16 21 C -0.10 -1.21 10.06 -39.41 -0.40 -1.61 16 22 C -0.12 -1.31 10.06 -39.45 -0.40 -1.71 16 23 C -0.12 -1.45 10.04 -39.63 -0.40 -1.85 16 24 C -0.08 -1.15 9.96 -39.59 -0.39 -1.54 16 25 C -0.12 -1.70 6.37 -103.78 -0.66 -2.37 16 26 C 0.12 2.52 5.69 -3.48 -0.02 2.50 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.09 7.45 -51.93 -0.39 0.70 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.91 5.47 -51.93 -0.28 0.63 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.54 7.04 -51.93 -0.37 1.18 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.61 7.37 -52.48 -0.39 1.22 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.86 7.00 -51.93 -0.36 1.49 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -30.78 328.32 -10.23 -41.01 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.84 Total: 2.59 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -4.52 Total: -16.85 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.12 Total: -36.01 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.78 -10.23 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.323 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds