Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47241 * 240.00195 * 3 2 1 5 5 H 1.48499 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47075 * 119.99913 * 3 2 1 7 7 C 1.37872 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99849 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.49862 * 60.06902 * 9 7 2 11 11 C 1.53037 * 109.49857 * 299.99942 * 9 7 2 12 12 C 1.53045 * 109.54044 * 178.65432 * 11 9 7 13 13 C 1.53190 * 109.31350 * 61.36615 * 12 11 9 14 14 N 1.46930 * 108.77467 * 305.36869 * 13 12 11 15 15 C 1.34776 * 120.63015 * 233.59035 * 14 13 12 16 16 O 1.21281 * 119.99860 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99885 * 359.97438 * 15 14 13 18 18 H 1.09002 * 112.83084 * 309.67387 * 17 15 14 19 19 C 1.53520 * 113.58448 * 178.55826 * 17 15 14 20 20 C 1.51613 * 87.24778 * 245.33131 * 19 17 15 21 21 C 1.38374 * 147.52838 * 179.97438 * 20 19 17 22 22 C 1.38580 * 120.16153 * 180.09237 * 21 20 19 23 23 C 1.38245 * 120.03124 * 359.97056 * 22 21 20 24 24 C 1.38090 * 119.95744 * 0.02562 * 23 22 21 25 25 C 1.38368 * 120.32998 * 359.97438 * 24 23 22 26 26 C 1.46931 * 118.74060 * 53.85696 * 14 13 12 27 27 H 0.97005 * 119.99927 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.45919 * 58.62904 * 11 9 7 29 29 H 1.09003 * 109.46544 * 298.67362 * 11 9 7 30 30 H 1.09001 * 109.49118 * 301.41696 * 12 11 9 31 31 H 1.09002 * 109.49584 * 181.32189 * 12 11 9 32 32 H 1.08994 * 109.58932 * 185.58019 * 13 12 11 33 33 H 1.08993 * 109.70557 * 65.22068 * 13 12 11 34 34 H 1.08994 * 113.59319 * 359.92921 * 19 17 15 35 35 H 1.09003 * 113.58517 * 130.74106 * 19 17 15 36 36 H 1.07996 * 119.83515 * 0.02562 * 21 20 19 37 37 H 1.07997 * 119.94659 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.01949 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.83691 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.58029 * 65.92908 * 26 14 13 41 41 H 1.08993 * 109.58722 * 186.35380 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5576 -0.8907 11 6 0.3714 -2.5811 1.2491 12 6 -0.4197 -3.8912 1.2333 13 6 0.5558 -5.0722 1.2504 14 7 1.4987 -4.9230 0.1334 15 6 1.6755 -5.9218 -0.7541 16 8 2.4571 -5.7865 -1.6715 17 6 0.9028 -7.2071 -0.6057 18 1 0.9655 -7.6247 0.3991 19 6 1.1913 -8.2287 -1.7148 20 6 -0.2513 -8.0564 -2.1480 21 6 -1.2563 -8.4144 -3.0293 22 6 -2.5176 -7.8525 -2.9125 23 6 -2.7752 -6.9322 -1.9136 24 6 -1.7747 -6.5727 -1.0323 25 6 -0.5129 -7.1297 -1.1429 26 6 2.2496 -3.6665 0.0058 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3207 -1.7391 1.2619 29 1 1.0003 -2.5474 2.1388 30 1 -1.0301 -3.9365 0.3314 31 1 -1.0633 -3.9381 2.1117 32 1 0.0026 -6.0047 1.1394 33 1 1.1040 -5.0825 2.1923 34 1 1.9132 -7.8792 -2.4528 35 1 1.4180 -9.2269 -1.3400 36 1 -1.0554 -9.1329 -3.8102 37 1 -3.2993 -8.1341 -3.6024 38 1 -3.7584 -6.4946 -1.8225 39 1 -1.9782 -5.8539 -0.2524 40 1 2.9328 -3.5620 0.8486 41 1 2.8141 -3.6713 -0.9266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397582950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = 3.185359 kcal Electronic energy + Delta-G solvation = -22656.719051 eV Core-core repulsion = 19501.468748 eV Total energy + Delta-G solvation = -3155.250303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.05680 -40.25545 -38.42616 -36.11112 -35.37223 -33.07315 -32.18754 -31.54619 -28.73619 -27.34038 -26.67347 -25.23474 -23.38342 -23.05610 -21.80881 -21.02237 -19.60487 -18.72606 -18.10635 -17.62533 -16.97369 -16.61627 -16.22282 -15.94466 -15.45627 -15.24417 -15.03423 -14.64121 -14.42035 -13.99080 -13.88555 -13.80535 -13.61339 -13.43124 -13.01890 -12.90833 -12.85461 -12.67113 -12.58642 -11.96380 -11.91003 -11.84306 -11.65571 -11.41040 -11.30582 -10.94494 -10.77187 -10.44448 -9.76226 -9.53714 -9.48620 -8.11625 -6.27194 0.31492 0.45489 1.40659 1.42225 1.49434 1.53709 2.06297 2.42854 2.80983 3.14796 3.15742 3.41924 3.43776 3.61292 4.04747 4.18512 4.19973 4.24630 4.27143 4.34632 4.52096 4.58639 4.64664 4.70382 4.78399 4.80530 4.84700 4.94574 4.95242 5.01897 5.10166 5.16357 5.26814 5.45699 5.46964 5.54162 5.57735 5.59802 5.75427 5.91626 6.06432 6.11952 6.32850 6.50969 6.81913 7.14627 7.41054 8.91907 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.004511 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.904245 B = 6205.216887 C = 6598.125461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.044 3.956 10 H -0.018 1.018 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.602 5.602 15 C 0.518 3.482 16 O -0.589 6.589 17 C -0.061 4.061 18 H 0.151 0.849 19 C -0.050 4.050 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.143 4.143 26 C 0.128 3.872 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 -18.178 1.748 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.071 0.929 9 C 0.024 3.976 10 H 0.000 1.000 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.332 5.332 15 C 0.307 3.693 16 O -0.470 6.470 17 C -0.082 4.082 18 H 0.168 0.832 19 C -0.087 4.087 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.146 4.146 24 C -0.119 4.119 25 C -0.143 4.143 26 C 0.006 3.994 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.223 -17.971 1.293 18.759 hybrid contribution 0.388 1.606 -0.228 1.667 sum -4.835 -16.366 1.065 17.098 Atomic orbital electron populations 1.70005 1.07122 1.27287 1.50809 1.25682 0.95679 1.02257 0.94485 0.85663 0.78453 0.79011 0.78843 1.20222 1.20733 1.19153 1.21417 0.93103 0.91914 1.51434 0.92913 1.18922 0.93040 0.91599 0.93999 1.00007 1.21418 0.98766 0.96973 0.97127 1.21911 0.97812 0.94920 1.01773 1.21980 0.90764 0.99557 0.88873 1.48316 1.41926 1.14876 1.28079 1.20766 0.81974 0.85656 0.80861 1.90624 1.39924 1.82375 1.34126 1.21592 0.90019 0.92869 1.03689 0.83154 1.21813 0.91693 0.99678 0.95542 1.22549 0.96946 0.98057 0.96076 1.20752 0.91924 1.01036 0.98873 1.21511 0.96829 0.96435 0.98377 1.21324 0.99620 0.98389 0.95266 1.20644 0.91629 0.99333 1.00324 1.21876 0.93577 0.99493 0.99396 1.21689 0.94491 0.82785 1.00484 0.92917 0.91893 0.94203 0.93847 0.89104 0.87754 0.89535 0.89468 0.85253 0.84210 0.82786 0.83560 0.86014 0.91574 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 11.31 21.45 0.24 -52.48 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -30.33 8.57 25.60 0.22 -30.11 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 2.24 2.26 -11.32 -0.03 2.22 16 10 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C -0.10 -4.73 4.96 30.62 0.15 -4.58 16 12 C -0.13 -4.30 6.08 30.67 0.19 -4.11 16 13 C 0.11 3.16 6.30 86.36 0.54 3.70 16 14 N -0.60 -22.30 2.97 -818.06 -2.43 -24.72 16 15 C 0.52 19.02 7.24 87.66 0.63 19.65 16 16 O -0.59 -26.48 15.12 -3.03 -0.05 -26.52 16 17 C -0.06 -1.60 2.92 -11.83 -0.03 -1.63 16 18 H 0.15 2.82 7.56 -2.39 -0.02 2.80 16 19 C -0.05 -1.19 7.77 30.31 0.24 -0.95 16 20 C -0.14 -3.46 7.49 -19.32 -0.14 -3.61 16 21 C -0.11 -2.36 10.06 22.38 0.23 -2.14 16 22 C -0.11 -2.28 10.06 22.35 0.22 -2.06 16 23 C -0.13 -2.85 10.04 22.24 0.22 -2.63 16 24 C -0.10 -2.65 9.96 22.27 0.22 -2.43 16 25 C -0.14 -3.89 6.37 -19.32 -0.12 -4.02 16 26 C 0.13 5.75 5.69 86.51 0.49 6.24 16 27 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 28 H 0.06 3.27 6.04 -2.38 -0.01 3.26 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.61 7.45 -2.39 -0.02 1.59 16 31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.10 2.35 5.47 -2.39 -0.01 2.34 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.46 7.04 -2.39 -0.02 2.44 16 35 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.12 3.07 7.37 -2.91 -0.02 3.05 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.05 2.57 7.00 -2.39 -0.02 2.55 16 Total: -1.00 -70.51 328.32 4.30 -66.21 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.02 Total: 16.57 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.48 Total: -24.99 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -2.18 Total: -77.21 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.51 4.30 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.394 kcal (2) G-P(sol) polarization free energy of solvation -70.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds