Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00219 * 2 1 4 4 H 1.48506 * 109.47004 * 270.00035 * 3 2 1 5 5 H 1.48500 * 109.46998 * 29.99502 * 3 2 1 6 6 H 1.48497 * 109.47241 * 149.99574 * 3 2 1 7 7 C 1.37884 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99482 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99504 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50021 * 60.06846 * 9 7 2 11 11 C 1.53039 * 109.49925 * 299.99690 * 9 7 2 12 12 C 1.53045 * 109.53587 * 178.69128 * 11 9 7 13 13 C 1.53192 * 109.31749 * 61.36286 * 12 11 9 14 14 N 1.46924 * 108.77540 * 305.36599 * 13 12 11 15 15 C 1.34773 * 120.63315 * 233.58560 * 14 13 12 16 16 O 1.21279 * 120.00368 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99815 * 359.97438 * 15 14 13 18 18 H 1.08996 * 113.12670 * 47.62938 * 17 15 14 19 19 C 1.52881 * 113.99117 * 180.02562 * 17 15 14 20 20 C 1.50766 * 89.76635 * 114.10091 * 19 17 15 21 21 C 1.38233 * 149.34623 * 180.34140 * 20 19 17 22 22 C 1.38169 * 120.12909 * 179.97438 * 21 20 19 23 23 C 1.38243 * 119.74857 * 359.65770 * 22 21 20 24 24 C 1.37979 * 120.17413 * 0.13700 * 23 22 21 25 25 C 1.38358 * 90.24500 * 0.02562 * 20 19 17 26 26 C 1.46934 * 118.73801 * 53.85825 * 14 13 12 27 27 H 0.97002 * 120.00150 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46110 * 58.66965 * 11 9 7 29 29 H 1.09000 * 109.46210 * 298.70630 * 11 9 7 30 30 H 1.09004 * 109.49616 * 301.41294 * 12 11 9 31 31 H 1.08999 * 109.52334 * 181.33274 * 12 11 9 32 32 H 1.09001 * 109.58737 * 185.57760 * 13 12 11 33 33 H 1.09001 * 109.58178 * 65.15226 * 13 12 11 34 34 H 1.08998 * 113.16406 * 358.88055 * 19 17 15 35 35 H 1.09001 * 113.17185 * 229.32496 * 19 17 15 36 36 H 1.08008 * 119.93049 * 359.91696 * 21 20 19 37 37 H 1.08003 * 120.12979 * 179.81016 * 22 21 20 38 38 H 1.07999 * 119.91358 * 180.15499 * 23 22 21 39 39 H 1.08000 * 119.83781 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.58652 * 65.92609 * 26 14 13 41 41 H 1.08992 * 109.58620 * 186.34969 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6253 -2.5580 -0.8901 11 6 0.3703 -2.5805 1.2496 12 6 -0.4200 -3.8910 1.2341 13 6 0.5559 -5.0717 1.2527 14 7 1.4995 -4.9229 0.1364 15 6 1.6775 -5.9222 -0.7502 16 8 2.4597 -5.7873 -1.6671 17 6 0.9054 -7.2078 -0.6015 18 1 -0.1592 -7.0502 -0.4288 19 6 1.2135 -8.2463 -1.6803 20 6 1.8195 -9.1455 -0.6329 21 6 2.4445 -10.3335 -0.3027 22 6 2.7891 -10.5944 1.0096 23 6 2.5129 -9.6599 1.9902 24 6 1.8930 -8.4720 1.6612 25 6 1.5402 -8.2061 0.3437 26 6 2.2500 -3.6661 0.0084 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3221 -1.7389 1.2612 29 1 0.9986 -2.5460 2.1397 30 1 -1.0299 -3.9374 0.3318 31 1 -1.0647 -3.9380 2.1117 32 1 0.0031 -6.0045 1.1420 33 1 1.1032 -5.0784 2.1954 34 1 1.9373 -7.8976 -2.4169 35 1 0.3185 -8.6658 -2.1399 36 1 2.6629 -11.0594 -1.0720 37 1 3.2746 -11.5239 1.2681 38 1 2.7834 -9.8601 3.0164 39 1 1.6802 -7.7455 2.4315 40 1 2.9326 -3.5607 0.8517 41 1 2.8153 -3.6714 -0.9234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397582952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = 21.177466 kcal Electronic energy + Delta-G solvation = -22358.213222 eV Core-core repulsion = 19203.743115 eV Total energy + Delta-G solvation = -3154.470107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.03903 -39.03019 -36.85822 -35.21330 -33.50010 -31.38507 -30.91103 -30.22043 -27.74951 -25.86816 -25.02556 -23.88995 -22.10184 -21.66172 -20.77037 -19.45001 -18.27309 -17.24241 -16.74944 -16.26653 -15.63422 -15.12669 -14.89340 -14.59904 -14.18153 -13.92932 -13.48795 -13.25281 -13.06819 -12.81101 -12.69633 -12.51180 -12.11808 -12.08290 -11.96010 -11.81217 -11.05864 -10.97493 -10.86369 -10.73473 -10.50944 -10.29822 -9.97334 -9.84521 -9.60844 -9.40304 -8.91558 -8.84924 -8.58237 -8.40162 -7.92323 -6.03246 -4.10328 1.18377 1.30029 2.89974 3.29427 3.35908 3.38274 3.45893 3.70120 4.12115 4.32989 4.41647 4.49076 4.83462 4.91744 4.99394 5.15065 5.26553 5.40309 5.47830 5.53140 5.59969 5.63030 5.75708 5.81439 5.92689 6.05135 6.10127 6.26816 6.31340 6.37223 6.38194 6.45784 6.63728 6.64670 6.78204 6.87645 6.93897 7.14658 7.31314 7.67611 7.89045 7.98064 8.05794 8.35743 8.59234 8.93197 9.54633 11.02227 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032756 B = 0.003778 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.604948 B = 7409.182594 C = 7591.001681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.597 5.597 15 C 0.528 3.472 16 O -0.545 6.545 17 C -0.073 4.073 18 H 0.122 0.878 19 C -0.057 4.057 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.090 4.090 25 C -0.116 4.116 26 C 0.116 3.884 27 H 0.260 0.740 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.055 0.945 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -18.592 3.794 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.014 4.014 14 N -0.328 5.328 15 C 0.315 3.685 16 O -0.424 6.424 17 C -0.094 4.094 18 H 0.139 0.861 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.005 4.005 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.211 -18.373 3.336 18.675 hybrid contribution 0.337 0.949 0.285 1.047 sum 0.126 -17.424 3.620 17.796 Atomic orbital electron populations 1.69868 1.05894 1.26486 1.50533 1.24935 0.94860 0.99083 0.94917 0.86576 0.79852 0.83307 0.78169 1.20651 1.21249 1.19877 1.21081 0.93014 0.90288 1.50925 0.92478 1.19051 0.92859 0.91088 0.94830 0.95178 1.21632 0.99465 0.95371 0.98574 1.22019 0.97636 0.96672 1.01039 1.21769 0.91329 0.99050 0.89214 1.48245 1.41718 1.15912 1.26911 1.19785 0.82663 0.84011 0.82083 1.90653 1.37514 1.81286 1.32897 1.21377 1.00689 0.92278 0.95008 0.86078 1.21504 1.01059 0.90850 0.95972 1.21755 0.97691 0.94362 0.98086 1.20160 0.99087 0.95760 0.96299 1.21017 1.00265 0.99450 0.92573 1.20934 0.99794 0.93851 0.99505 1.20611 0.98166 0.97079 0.94963 1.21870 1.00091 0.96007 0.93667 1.22127 0.95041 0.81779 1.01518 0.92969 0.88576 0.94584 0.92310 0.92411 0.91132 0.91949 0.87468 0.88930 0.86282 0.85637 0.85727 0.86305 0.92650 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.31 55.43 0.63 -24.18 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 2.27 -91.43 -0.21 0.79 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C 0.11 1.69 6.34 -3.71 -0.02 1.67 16 14 N -0.60 -11.11 2.97 -172.50 -0.51 -11.62 16 15 C 0.53 9.69 7.27 -10.99 -0.08 9.61 16 16 O -0.55 -11.86 15.13 5.56 0.08 -11.77 16 17 C -0.07 -1.01 3.05 -92.63 -0.28 -1.29 16 18 H 0.12 1.43 7.15 -51.93 -0.37 1.06 16 19 C -0.06 -0.72 7.54 -31.55 -0.24 -0.96 16 20 C -0.12 -1.52 7.60 -104.55 -0.79 -2.32 16 21 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 22 C -0.12 -1.15 10.06 -39.60 -0.40 -1.55 16 23 C -0.12 -1.28 10.03 -39.67 -0.40 -1.68 16 24 C -0.09 -1.09 10.05 -39.41 -0.40 -1.49 16 25 C -0.12 -1.55 6.78 -107.59 -0.73 -2.28 16 26 C 0.12 2.53 5.68 -3.48 -0.02 2.51 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.90 5.73 -51.93 -0.30 0.60 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.52 7.04 -51.93 -0.37 1.16 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.86 7.00 -51.93 -0.36 1.50 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -30.51 330.11 -10.40 -40.91 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.90 Total: 1.81 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -4.65 Total: -16.16 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.12 Total: -35.80 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.51 -10.40 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.087 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds