Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00219 * 2 1 4 4 H 1.48506 * 109.47004 * 270.00035 * 3 2 1 5 5 H 1.48500 * 109.46998 * 29.99502 * 3 2 1 6 6 H 1.48497 * 109.47241 * 149.99574 * 3 2 1 7 7 C 1.37884 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99482 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99504 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50021 * 60.06846 * 9 7 2 11 11 C 1.53039 * 109.49925 * 299.99690 * 9 7 2 12 12 C 1.53045 * 109.53587 * 178.69128 * 11 9 7 13 13 C 1.53192 * 109.31749 * 61.36286 * 12 11 9 14 14 N 1.46924 * 108.77540 * 305.36599 * 13 12 11 15 15 C 1.34773 * 120.63315 * 233.58560 * 14 13 12 16 16 O 1.21279 * 120.00368 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99815 * 359.97438 * 15 14 13 18 18 H 1.08996 * 113.12670 * 47.62938 * 17 15 14 19 19 C 1.52881 * 113.99117 * 180.02562 * 17 15 14 20 20 C 1.50766 * 89.76635 * 114.10091 * 19 17 15 21 21 C 1.38233 * 149.34623 * 180.34140 * 20 19 17 22 22 C 1.38169 * 120.12909 * 179.97438 * 21 20 19 23 23 C 1.38243 * 119.74857 * 359.65770 * 22 21 20 24 24 C 1.37979 * 120.17413 * 0.13700 * 23 22 21 25 25 C 1.38358 * 90.24500 * 0.02562 * 20 19 17 26 26 C 1.46934 * 118.73801 * 53.85825 * 14 13 12 27 27 H 0.97002 * 120.00150 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46110 * 58.66965 * 11 9 7 29 29 H 1.09000 * 109.46210 * 298.70630 * 11 9 7 30 30 H 1.09004 * 109.49616 * 301.41294 * 12 11 9 31 31 H 1.08999 * 109.52334 * 181.33274 * 12 11 9 32 32 H 1.09001 * 109.58737 * 185.57760 * 13 12 11 33 33 H 1.09001 * 109.58178 * 65.15226 * 13 12 11 34 34 H 1.08998 * 113.16406 * 358.88055 * 19 17 15 35 35 H 1.09001 * 113.17185 * 229.32496 * 19 17 15 36 36 H 1.08008 * 119.93049 * 359.91696 * 21 20 19 37 37 H 1.08003 * 120.12979 * 179.81016 * 22 21 20 38 38 H 1.07999 * 119.91358 * 180.15499 * 23 22 21 39 39 H 1.08000 * 119.83781 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.58652 * 65.92609 * 26 14 13 41 41 H 1.08992 * 109.58620 * 186.34969 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6253 -2.5580 -0.8901 11 6 0.3703 -2.5805 1.2496 12 6 -0.4200 -3.8910 1.2341 13 6 0.5559 -5.0717 1.2527 14 7 1.4995 -4.9229 0.1364 15 6 1.6775 -5.9222 -0.7502 16 8 2.4597 -5.7873 -1.6671 17 6 0.9054 -7.2078 -0.6015 18 1 -0.1592 -7.0502 -0.4288 19 6 1.2135 -8.2463 -1.6803 20 6 1.8195 -9.1455 -0.6329 21 6 2.4445 -10.3335 -0.3027 22 6 2.7891 -10.5944 1.0096 23 6 2.5129 -9.6599 1.9902 24 6 1.8930 -8.4720 1.6612 25 6 1.5402 -8.2061 0.3437 26 6 2.2500 -3.6661 0.0084 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3221 -1.7389 1.2612 29 1 0.9986 -2.5460 2.1397 30 1 -1.0299 -3.9374 0.3318 31 1 -1.0647 -3.9380 2.1117 32 1 0.0031 -6.0045 1.1420 33 1 1.1032 -5.0784 2.1954 34 1 1.9373 -7.8976 -2.4169 35 1 0.3185 -8.6658 -2.1399 36 1 2.6629 -11.0594 -1.0720 37 1 3.2746 -11.5239 1.2681 38 1 2.7834 -9.8601 3.0164 39 1 1.6802 -7.7455 2.4315 40 1 2.9326 -3.5607 0.8517 41 1 2.8153 -3.6714 -0.9234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397582952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = 5.464584 kcal Electronic energy + Delta-G solvation = -22358.894584 eV Core-core repulsion = 19203.743115 eV Total energy + Delta-G solvation = -3155.151468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12817 -40.34433 -38.41191 -36.19666 -35.37469 -33.08289 -32.11850 -31.60255 -28.77192 -27.32654 -26.67822 -25.25059 -23.40583 -22.99375 -21.87926 -20.89465 -19.68558 -18.71327 -18.12344 -17.67998 -16.93312 -16.68261 -16.21527 -15.88321 -15.35564 -15.29204 -15.08813 -14.67085 -14.48896 -14.03697 -13.87047 -13.71404 -13.63716 -13.48599 -13.04442 -12.91065 -12.86766 -12.66589 -12.55605 -12.01280 -11.88091 -11.85608 -11.62494 -11.40106 -11.26722 -10.95976 -10.77501 -10.44669 -9.74998 -9.53698 -9.51135 -8.11551 -6.26712 0.32278 0.46651 1.40394 1.41543 1.50592 1.52675 2.05258 2.43054 2.82565 3.14292 3.15053 3.40633 3.45826 3.63652 4.02304 4.19032 4.22211 4.24008 4.28601 4.34494 4.51924 4.57801 4.65665 4.72682 4.78294 4.81183 4.84092 4.94112 4.95826 4.99466 5.10021 5.16810 5.26935 5.46012 5.47565 5.53976 5.58328 5.60395 5.76581 5.92073 6.07232 6.12081 6.33438 6.49987 6.82179 7.13638 7.41345 8.92088 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032756 B = 0.003778 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.604948 B = 7409.182594 C = 7591.001681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.012 1.012 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.112 3.888 14 N -0.601 5.601 15 C 0.522 3.478 16 O -0.589 6.589 17 C -0.068 4.068 18 H 0.146 0.854 19 C -0.055 4.055 20 C -0.136 4.136 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.137 4.137 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.129 0.871 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 -20.744 5.617 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.007 0.993 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.010 4.010 14 N -0.331 5.331 15 C 0.311 3.689 16 O -0.471 6.471 17 C -0.089 4.089 18 H 0.163 0.837 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.138 4.138 26 C 0.007 3.993 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.364 -20.545 5.179 21.191 hybrid contribution 0.414 1.575 -0.293 1.655 sum 0.050 -18.970 4.886 19.589 Atomic orbital electron populations 1.69999 1.07044 1.27240 1.50824 1.25676 0.95707 1.02217 0.94526 0.85608 0.78858 0.79396 0.78102 1.20577 1.20455 1.19229 1.21436 0.93052 0.91950 1.51362 0.93071 1.18948 0.93048 0.91432 0.94259 0.99339 1.21423 0.98770 0.97094 0.97073 1.21925 0.97753 0.94777 1.02085 1.21977 0.90643 0.99627 0.88743 1.48308 1.41987 1.14768 1.28058 1.20631 0.82253 0.85148 0.80909 1.90625 1.39540 1.82312 1.34588 1.21332 1.01131 0.89851 0.96544 0.83695 1.21479 1.01710 0.90671 0.95355 1.21892 0.98660 0.95282 0.97766 1.20515 0.98550 0.95586 0.97560 1.21447 0.99147 1.00419 0.91912 1.21324 0.98770 0.93165 1.01038 1.20880 0.98377 0.98122 0.94644 1.21831 1.01615 0.95794 0.94520 1.21677 0.94513 0.82820 1.00334 0.92888 0.91777 0.94451 0.93418 0.89066 0.87439 0.90144 0.89846 0.86246 0.84405 0.82588 0.83090 0.85274 0.92148 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.21 11.31 21.45 0.24 -51.97 16 2 C 0.02 1.00 5.30 84.66 0.45 1.45 16 3 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -30.19 8.56 25.60 0.22 -29.97 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 2.16 2.27 -11.32 -0.03 2.13 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 11 C -0.11 -4.73 4.96 30.62 0.15 -4.58 16 12 C -0.13 -4.27 6.08 30.67 0.19 -4.08 16 13 C 0.11 3.20 6.34 86.36 0.55 3.75 16 14 N -0.60 -22.32 2.97 -818.06 -2.43 -24.75 16 15 C 0.52 19.28 7.27 87.66 0.64 19.91 16 16 O -0.59 -26.72 15.13 -3.03 -0.05 -26.76 16 17 C -0.07 -1.81 3.05 -12.09 -0.04 -1.84 16 18 H 0.15 3.06 7.15 -2.39 -0.02 3.04 16 19 C -0.06 -1.35 7.54 27.47 0.21 -1.14 16 20 C -0.14 -3.26 7.60 -19.82 -0.15 -3.41 16 21 C -0.10 -2.04 10.04 22.25 0.22 -1.82 16 22 C -0.11 -1.83 10.06 22.25 0.22 -1.61 16 23 C -0.13 -2.18 10.03 22.21 0.22 -1.95 16 24 C -0.10 -2.19 10.05 22.38 0.22 -1.96 16 25 C -0.14 -3.40 6.78 -21.79 -0.15 -3.55 16 26 C 0.13 5.82 5.68 86.51 0.49 6.31 16 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.11 2.35 5.73 -2.39 -0.01 2.33 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.44 7.04 -2.39 -0.02 2.42 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.05 2.62 7.00 -2.39 -0.02 2.60 16 Total: -1.00 -69.69 330.11 4.24 -65.45 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.02 Total: 14.55 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.42 Total: -22.37 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.18 Total: -76.72 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.69 4.24 -65.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.914 kcal (2) G-P(sol) polarization free energy of solvation -69.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds