Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42892 * 114.00383 * 2 1 4 4 C 1.52995 * 109.47555 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46989 * 65.00182 * 4 3 2 6 6 C 1.36937 * 119.99849 * 270.00523 * 5 4 3 7 7 H 1.08004 * 120.00125 * 140.21043 * 6 5 4 8 8 C 1.38808 * 120.00001 * 320.19975 * 6 5 4 9 9 N 1.31617 * 120.00329 * 156.70954 * 8 6 5 10 10 Si 1.86806 * 120.00101 * 336.71491 * 8 6 5 11 11 H 1.48497 * 109.47253 * 95.19063 * 10 8 6 12 12 H 1.48496 * 109.46995 * 215.19183 * 10 8 6 13 13 H 1.48501 * 109.47010 * 335.18928 * 10 8 6 14 14 C 1.46500 * 120.00149 * 89.99800 * 5 4 3 15 15 C 1.53001 * 109.47430 * 264.54463 * 14 5 4 16 16 C 1.50699 * 109.47333 * 183.00828 * 15 14 5 17 17 C 1.38414 * 120.02852 * 87.02430 * 16 15 14 18 18 F 1.35098 * 120.01175 * 359.69993 * 17 16 15 19 19 C 1.38471 * 119.97712 * 179.97438 * 17 16 15 20 20 C 1.38214 * 120.02259 * 0.02562 * 19 17 16 21 21 C 1.38210 * 120.04942 * 359.97438 * 20 19 17 22 22 C 1.38424 * 120.02095 * 267.00689 * 16 15 14 23 23 F 1.35095 * 120.01418 * 359.97438 * 22 16 15 24 24 H 1.09008 * 109.47353 * 299.99718 * 1 2 3 25 25 H 1.08999 * 109.47341 * 59.99482 * 1 2 3 26 26 H 1.09005 * 109.47620 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46879 * 60.00055 * 3 2 1 28 28 H 1.09007 * 109.47186 * 300.00451 * 3 2 1 29 29 H 1.08992 * 109.47462 * 305.00488 * 4 3 2 30 30 H 1.08997 * 109.47405 * 184.99839 * 4 3 2 31 31 H 0.97001 * 120.00115 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47202 * 144.54107 * 14 5 4 33 33 H 1.09005 * 109.47107 * 24.54432 * 14 5 4 34 34 H 1.08996 * 109.47323 * 62.99818 * 15 14 5 35 35 H 1.09009 * 109.46743 * 303.00305 * 15 14 5 36 36 H 1.07995 * 119.98954 * 179.97438 * 19 17 16 37 37 H 1.08003 * 119.97164 * 180.02562 * 20 19 17 38 38 H 1.07998 * 119.98366 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0976 -0.7976 -1.3345 7 1 3.7895 -1.3130 -2.2322 8 6 4.6166 -1.5151 -0.2657 9 7 4.3287 -2.7921 -0.1285 10 14 5.7236 -0.6685 0.9783 11 1 4.9122 -0.2190 2.1379 12 1 6.7653 -1.6197 1.4420 13 1 6.3734 0.5064 0.3437 14 6 4.2882 1.3997 -2.4131 15 6 3.0621 1.4836 -3.3245 16 6 3.4051 2.2820 -4.5557 17 6 3.9643 1.6538 -5.6551 18 9 4.2086 0.3254 -5.6226 19 6 4.2785 2.3883 -6.7861 20 6 4.0344 3.7483 -6.8173 21 6 3.4761 4.3766 -5.7202 22 6 3.1607 3.6441 -4.5883 23 9 2.6141 4.2583 -3.5164 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8507 0.5684 0.8426 30 1 3.9784 2.1764 0.0902 31 1 4.6911 -3.2934 0.6187 32 1 5.1206 0.9612 -2.9633 33 1 4.5611 2.4005 -2.0782 34 1 2.2457 1.9706 -2.7913 35 1 2.7570 0.4786 -3.6164 36 1 4.7153 1.8984 -7.6437 37 1 4.2795 4.3204 -7.7000 38 1 3.2862 5.4395 -5.7456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402950456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -83.881646 kcal Electronic energy + Delta-G solvation = -23154.992814 eV Core-core repulsion = 19441.737473 eV Total energy + Delta-G solvation = -3713.255341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.90910 -48.75280 -38.86211 -37.39323 -35.73376 -33.10120 -31.40451 -30.27089 -29.36621 -27.63051 -25.63674 -24.31124 -22.79733 -22.64241 -21.22791 -20.27015 -18.03280 -17.26907 -16.64336 -16.11608 -15.81684 -15.75664 -15.47404 -15.26757 -15.10899 -14.65405 -14.30733 -14.21925 -13.87654 -13.38011 -13.11368 -12.71663 -12.68069 -12.38655 -12.05500 -11.89563 -11.78253 -11.49388 -11.35073 -11.14851 -10.72001 -10.63578 -10.53603 -10.00590 -9.72566 -9.49955 -8.83991 -8.78866 -8.74184 -8.30955 -6.70117 -5.83985 -3.26282 0.97017 1.02306 3.36577 3.40711 3.54345 3.59230 3.97613 4.45791 4.56014 4.63955 4.66524 4.73466 4.80959 5.07253 5.20431 5.52551 5.62066 5.74613 5.76722 5.82364 5.94991 5.96487 5.99205 6.03136 6.03877 6.10215 6.10693 6.17096 6.27221 6.31012 6.38150 6.68198 6.78975 6.82358 6.94418 8.01918 8.21400 8.54621 9.09819 9.85982 10.23092 11.31865 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.005688 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.272559 B = 4921.582453 C = 5530.267296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.046 3.954 4 C 0.133 3.867 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.075 0.925 8 C 0.047 3.953 9 N -0.894 5.894 10 Si 0.869 3.131 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.271 1.271 14 C 0.158 3.842 15 C -0.103 4.103 16 C -0.136 4.136 17 C 0.131 3.869 18 F -0.122 7.122 19 C -0.165 4.165 20 C -0.077 4.077 21 C -0.167 4.167 22 C 0.123 3.877 23 F -0.131 7.131 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 14.585 -10.259 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.034 4.034 4 C 0.007 3.993 5 N -0.314 5.314 6 C -0.383 4.383 7 H 0.093 0.907 8 C -0.154 4.154 9 N -0.535 5.535 10 Si 0.699 3.301 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.196 1.196 14 C 0.032 3.968 15 C -0.143 4.143 16 C -0.139 4.139 17 C 0.111 3.889 18 F -0.100 7.100 19 C -0.184 4.184 20 C -0.095 4.095 21 C -0.186 4.186 22 C 0.104 3.896 23 F -0.109 7.109 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.181 14.192 -10.101 17.707 hybrid contribution 0.143 0.538 0.964 1.114 sum -3.038 14.730 -9.137 17.598 Atomic orbital electron populations 1.22640 0.83901 1.01825 0.98225 1.88302 1.16810 1.26491 1.94779 1.23311 0.97446 0.85046 0.97577 1.21366 0.90336 0.96547 0.91077 1.44010 1.75962 1.03871 1.07566 1.18540 1.36525 0.79702 1.03509 0.90746 1.25375 0.97708 0.94764 0.97563 1.69902 1.44025 1.08679 1.30869 0.87029 0.81843 0.79455 0.81736 1.21466 1.22999 1.19604 1.20789 0.93438 0.93880 0.88739 1.21337 1.01748 0.99491 0.91726 1.20271 1.02283 0.93471 0.97869 1.17287 0.99085 0.78388 0.94099 1.91581 1.91548 1.30186 1.96698 1.21196 1.04262 0.94882 0.98085 1.20726 0.97313 0.93532 0.97960 1.21130 1.03573 1.00913 0.92953 1.17242 0.97985 0.89833 0.84573 1.91505 1.82974 1.82563 1.53884 0.95618 0.95320 0.90338 0.95525 0.94414 0.91822 0.92865 0.93020 0.92696 0.94362 0.91045 0.89636 0.84327 0.84392 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.92 10.18 -35.23 -0.36 -8.28 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.13 2.95 4.99 -4.04 -0.02 2.93 16 5 N -0.59 -14.28 2.02 -173.24 -0.35 -14.63 16 6 C -0.25 -7.22 9.38 -15.06 -0.14 -7.37 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 8 C 0.05 1.37 5.27 -17.43 -0.09 1.28 16 9 N -0.89 -27.96 13.97 55.49 0.78 -27.18 16 10 Si 0.87 22.64 25.24 -169.99 -4.29 18.35 16 11 H -0.29 -7.32 6.67 56.52 0.38 -6.94 16 12 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 13 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.16 3.23 5.70 -4.04 -0.02 3.21 16 15 C -0.10 -1.89 5.28 -27.88 -0.15 -2.04 16 16 C -0.14 -2.11 5.15 -104.49 -0.54 -2.65 16 17 C 0.13 1.92 7.24 -39.43 -0.29 1.63 16 18 F -0.12 -2.07 16.53 2.25 0.04 -2.03 16 19 C -0.17 -1.83 10.03 -39.50 -0.40 -2.23 16 20 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 21 C -0.17 -1.75 10.02 -39.51 -0.40 -2.15 16 22 C 0.12 1.68 7.24 -39.43 -0.29 1.40 16 23 F -0.13 -1.90 16.43 2.25 0.04 -1.86 16 24 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.71 6.58 -51.92 -0.34 0.37 16 29 H 0.06 1.57 3.64 -51.93 -0.19 1.38 16 30 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.04 0.71 7.83 -51.93 -0.41 0.31 16 34 H 0.07 1.30 5.99 -51.93 -0.31 0.99 16 35 H 0.09 1.76 7.73 -51.92 -0.40 1.36 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -32.49 323.70 -5.67 -38.16 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.02 Total: -3.12 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.38 Total: -4.28 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.43 Total: -41.82 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.36 Total: -8.28 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.29 Total: 18.35 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.49 -5.67 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402950456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.726 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds