Wall clock time and date at job start Tue Mar 31 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42892 * 114.00383 * 2 1 4 4 C 1.52995 * 109.47555 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46989 * 65.00182 * 4 3 2 6 6 C 1.36937 * 119.99849 * 270.00523 * 5 4 3 7 7 H 1.08004 * 120.00125 * 140.21043 * 6 5 4 8 8 C 1.38808 * 120.00001 * 320.19975 * 6 5 4 9 9 N 1.31617 * 120.00329 * 156.70954 * 8 6 5 10 10 Si 1.86806 * 120.00101 * 336.71491 * 8 6 5 11 11 H 1.48497 * 109.47253 * 95.19063 * 10 8 6 12 12 H 1.48496 * 109.46995 * 215.19183 * 10 8 6 13 13 H 1.48501 * 109.47010 * 335.18928 * 10 8 6 14 14 C 1.46500 * 120.00149 * 89.99800 * 5 4 3 15 15 C 1.53001 * 109.47430 * 264.54463 * 14 5 4 16 16 C 1.50699 * 109.47333 * 183.00828 * 15 14 5 17 17 C 1.38414 * 120.02852 * 87.02430 * 16 15 14 18 18 F 1.35098 * 120.01175 * 359.69993 * 17 16 15 19 19 C 1.38471 * 119.97712 * 179.97438 * 17 16 15 20 20 C 1.38214 * 120.02259 * 0.02562 * 19 17 16 21 21 C 1.38210 * 120.04942 * 359.97438 * 20 19 17 22 22 C 1.38424 * 120.02095 * 267.00689 * 16 15 14 23 23 F 1.35095 * 120.01418 * 359.97438 * 22 16 15 24 24 H 1.09008 * 109.47353 * 299.99718 * 1 2 3 25 25 H 1.08999 * 109.47341 * 59.99482 * 1 2 3 26 26 H 1.09005 * 109.47620 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46879 * 60.00055 * 3 2 1 28 28 H 1.09007 * 109.47186 * 300.00451 * 3 2 1 29 29 H 1.08992 * 109.47462 * 305.00488 * 4 3 2 30 30 H 1.08997 * 109.47405 * 184.99839 * 4 3 2 31 31 H 0.97001 * 120.00115 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47202 * 144.54107 * 14 5 4 33 33 H 1.09005 * 109.47107 * 24.54432 * 14 5 4 34 34 H 1.08996 * 109.47323 * 62.99818 * 15 14 5 35 35 H 1.09009 * 109.46743 * 303.00305 * 15 14 5 36 36 H 1.07995 * 119.98954 * 179.97438 * 19 17 16 37 37 H 1.08003 * 119.97164 * 180.02562 * 20 19 17 38 38 H 1.07998 * 119.98366 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0976 -0.7976 -1.3345 7 1 3.7895 -1.3130 -2.2322 8 6 4.6166 -1.5151 -0.2657 9 7 4.3287 -2.7921 -0.1285 10 14 5.7236 -0.6685 0.9783 11 1 4.9122 -0.2190 2.1379 12 1 6.7653 -1.6197 1.4420 13 1 6.3734 0.5064 0.3437 14 6 4.2882 1.3997 -2.4131 15 6 3.0621 1.4836 -3.3245 16 6 3.4051 2.2820 -4.5557 17 6 3.9643 1.6538 -5.6551 18 9 4.2086 0.3254 -5.6226 19 6 4.2785 2.3883 -6.7861 20 6 4.0344 3.7483 -6.8173 21 6 3.4761 4.3766 -5.7202 22 6 3.1607 3.6441 -4.5883 23 9 2.6141 4.2583 -3.5164 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8507 0.5684 0.8426 30 1 3.9784 2.1764 0.0902 31 1 4.6911 -3.2934 0.6187 32 1 5.1206 0.9612 -2.9633 33 1 4.5611 2.4005 -2.0782 34 1 2.2457 1.9706 -2.7913 35 1 2.7570 0.4786 -3.6164 36 1 4.7153 1.8984 -7.6437 37 1 4.2795 4.3204 -7.7000 38 1 3.2862 5.4395 -5.7456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402950456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:03 Heat of formation + Delta-G solvation = -104.384704 kcal Electronic energy + Delta-G solvation = -23155.881894 eV Core-core repulsion = 19441.737473 eV Total energy + Delta-G solvation = -3714.144421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -49.95804 -49.95192 -39.88916 -39.03426 -37.44498 -34.61310 -33.40652 -31.20195 -30.87484 -29.21106 -27.17905 -26.01912 -24.19027 -23.77026 -22.65365 -21.97213 -19.06175 -18.83365 -18.23193 -17.70469 -17.11579 -16.97775 -16.74908 -16.53062 -16.35602 -16.25539 -15.88414 -15.54164 -15.32156 -15.05267 -14.61831 -14.42151 -14.01834 -13.72308 -13.66031 -13.24690 -13.04122 -12.97669 -12.73384 -12.60832 -12.45411 -12.30014 -12.08302 -11.81473 -11.65235 -11.43259 -10.57125 -10.36225 -9.85187 -9.70051 -8.67855 -8.10727 -5.50350 0.02691 0.05154 1.32329 1.41415 1.52937 2.43985 2.48577 2.97849 3.03634 3.10364 3.38881 3.49402 3.72479 3.75147 3.97307 4.23065 4.28073 4.31632 4.38807 4.42738 4.52203 4.55625 4.63360 4.66425 4.71693 4.83774 4.84347 4.92459 5.00661 5.06301 5.11376 5.23399 5.25836 5.29915 5.86102 6.01293 6.25199 6.55599 7.05208 7.68898 8.09731 9.09659 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.005688 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.272559 B = 4921.582453 C = 5530.267296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.048 3.952 4 C 0.124 3.876 5 N -0.605 5.605 6 C -0.236 4.236 7 H 0.026 0.974 8 C -0.012 4.012 9 N -0.946 5.946 10 Si 0.939 3.061 11 H -0.276 1.276 12 H -0.308 1.308 13 H -0.257 1.257 14 C 0.160 3.840 15 C -0.085 4.085 16 C -0.163 4.163 17 C 0.099 3.901 18 F -0.148 7.148 19 C -0.156 4.156 20 C -0.055 4.055 21 C -0.152 4.152 22 C 0.111 3.889 23 F -0.139 7.139 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.259 0.741 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.163 0.837 37 H 0.187 0.813 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 18.783 -11.315 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.031 4.031 4 C -0.001 4.001 5 N -0.327 5.327 6 C -0.366 4.366 7 H 0.043 0.957 8 C -0.208 4.208 9 N -0.590 5.590 10 Si 0.767 3.233 11 H -0.203 1.203 12 H -0.237 1.237 13 H -0.181 1.181 14 C 0.034 3.966 15 C -0.125 4.125 16 C -0.165 4.165 17 C 0.080 3.920 18 F -0.127 7.127 19 C -0.175 4.175 20 C -0.073 4.073 21 C -0.170 4.170 22 C 0.091 3.909 23 F -0.117 7.117 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.181 0.819 37 H 0.204 0.796 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.960 18.448 -11.172 21.769 hybrid contribution -0.018 -0.676 1.114 1.304 sum -2.978 17.772 -10.057 20.637 Atomic orbital electron populations 1.22791 0.81429 1.02459 1.00114 1.88221 1.19787 1.28450 1.95205 1.23268 0.95840 0.84458 0.99491 1.21524 0.92241 0.97455 0.88914 1.44069 1.76715 1.02553 1.09395 1.18263 1.34878 0.81884 1.01566 0.95665 1.25983 0.99283 0.95353 1.00181 1.70042 1.46040 1.10594 1.32327 0.85911 0.79427 0.78405 0.79547 1.20306 1.23706 1.18091 1.20859 0.93888 0.94091 0.87725 1.20895 1.00530 0.98020 0.93005 1.20054 1.04939 0.94419 0.97125 1.17730 1.00892 0.77724 0.95654 1.91514 1.92041 1.32207 1.96927 1.21562 1.02990 0.95729 0.97199 1.21314 0.94457 0.92634 0.98869 1.21571 1.01551 1.02359 0.91537 1.17454 0.98686 0.89155 0.85580 1.91481 1.83241 1.82465 1.54543 0.92851 0.94080 0.90519 0.92271 0.93501 0.94244 0.89322 0.93245 0.94517 0.91766 0.91127 0.93544 0.81915 0.79555 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.40 -18.34 10.18 -148.98 -1.52 -19.86 16 3 C 0.05 1.87 6.28 71.98 0.45 2.32 16 4 C 0.12 5.35 4.99 86.38 0.43 5.78 16 5 N -0.61 -29.64 2.02 -702.01 -1.42 -31.06 16 6 C -0.24 -14.10 9.38 84.03 0.79 -13.31 16 7 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 8 C -0.01 -0.72 5.27 84.86 0.45 -0.28 16 9 N -0.95 -62.10 13.97 21.65 0.30 -61.79 16 10 Si 0.94 47.95 25.24 68.60 1.73 49.69 16 11 H -0.28 -13.50 6.67 99.48 0.66 -12.83 16 12 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 13 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 14 C 0.16 6.64 5.70 86.38 0.49 7.13 16 15 C -0.08 -3.23 5.28 29.85 0.16 -3.07 16 16 C -0.16 -5.03 5.15 -19.78 -0.10 -5.13 16 17 C 0.10 2.91 7.24 22.37 0.16 3.07 16 18 F -0.15 -5.36 16.53 44.97 0.74 -4.62 16 19 C -0.16 -3.00 10.03 22.32 0.22 -2.78 16 20 C -0.06 -0.73 10.04 22.26 0.22 -0.51 16 21 C -0.15 -2.49 10.02 22.32 0.22 -2.27 16 22 C 0.11 2.78 7.24 22.37 0.16 2.94 16 23 F -0.14 -3.73 16.43 44.97 0.74 -2.99 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.71 6.58 -2.38 -0.02 1.70 16 29 H 0.04 1.91 3.64 -2.39 -0.01 1.90 16 30 H 0.09 3.16 7.86 -2.39 -0.02 3.14 16 31 H 0.26 16.11 8.31 -92.71 -0.77 15.33 16 32 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.06 2.32 7.83 -2.38 -0.02 2.30 16 34 H 0.07 2.62 5.99 -2.39 -0.01 2.61 16 35 H 0.05 2.08 7.73 -2.38 -0.02 2.06 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -76.42 323.70 6.51 -69.90 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.02 Total: 4.61 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 4.91 Total: -3.87 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -1.11 Total: -92.85 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.52 Total: -19.86 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.48 Total: -7.61 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.73 Total: 49.69 kcal Total: -76.42 6.51 -69.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402950456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.483 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds