Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00525 * 2 1 4 4 H 1.48504 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47151 * 300.00387 * 3 2 1 6 6 H 1.48499 * 109.46867 * 59.99874 * 3 2 1 7 7 C 1.37881 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99815 * 173.54709 * 7 2 1 9 9 C 1.50704 * 120.00040 * 353.55590 * 7 2 1 10 10 C 1.52994 * 115.55356 * 85.40118 * 9 7 2 11 11 N 1.46500 * 109.47108 * 65.14102 * 10 9 7 12 12 C 1.34778 * 120.00309 * 178.27402 * 11 10 9 13 13 O 1.21284 * 119.99680 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00321 * 180.02562 * 12 11 10 15 15 C 1.54343 * 110.82207 * 292.97171 * 14 12 11 16 16 C 1.51369 * 105.17517 * 215.42414 * 15 14 12 17 17 C 1.38489 * 130.39542 * 197.19008 * 16 15 14 18 18 C 1.38110 * 120.21597 * 180.02562 * 17 16 15 19 19 C 1.38255 * 119.93475 * 359.97438 * 18 17 16 20 20 C 1.38109 * 119.93414 * 0.02562 * 19 18 17 21 21 C 1.38225 * 109.75121 * 17.18713 * 16 15 14 22 22 C 1.51359 * 109.76174 * 0.02562 * 21 16 15 23 23 C 1.53002 * 117.49624 * 231.07264 * 9 7 2 24 24 C 1.53003 * 117.49484 * 299.73173 * 9 7 2 25 25 H 0.97001 * 119.99483 * 5.05610 * 1 2 3 26 26 H 1.09003 * 109.47577 * 305.14588 * 10 9 7 27 27 H 1.08997 * 109.47173 * 185.14298 * 10 9 7 28 28 H 0.97000 * 120.00105 * 358.27436 * 11 10 9 29 29 H 1.09000 * 110.73139 * 56.59164 * 14 12 11 30 30 H 1.09001 * 110.30412 * 334.35269 * 15 14 12 31 31 H 1.09007 * 110.30550 * 96.49926 * 15 14 12 32 32 H 1.08003 * 119.89633 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.03309 * 180.02562 * 18 17 16 34 34 H 1.07989 * 120.03304 * 179.97438 * 19 18 17 35 35 H 1.07992 * 119.89117 * 180.02562 * 20 19 18 36 36 H 1.09007 * 110.30580 * 223.88759 * 22 21 16 37 37 H 1.08996 * 110.39125 * 101.77443 * 22 21 16 38 38 H 1.08997 * 117.49890 * 214.99691 * 23 9 7 39 39 H 1.09002 * 117.49974 * 0.02858 * 23 9 7 40 40 H 1.08995 * 117.50142 * 359.97438 * 24 9 7 41 41 H 1.09006 * 117.49761 * 144.97335 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1046 9 6 1.2580 -2.4950 0.1476 10 6 0.7018 -3.0870 -1.1489 11 7 1.8108 -3.4602 -2.0305 12 6 1.5595 -4.0376 -3.2221 13 8 0.4153 -4.2479 -3.5648 14 6 2.7003 -4.4220 -4.1287 15 6 3.4335 -3.1678 -4.6499 16 6 3.8498 -3.5113 -6.0640 17 6 4.7874 -2.9179 -6.8927 18 6 5.0012 -3.4105 -8.1652 19 6 4.2776 -4.4998 -8.6138 20 6 3.3421 -5.0929 -7.7889 21 6 3.1265 -4.6004 -6.5125 22 6 2.1742 -5.0628 -5.4307 23 6 1.7469 -3.4729 1.2180 24 6 0.4416 -2.7004 1.4252 25 1 -0.4849 0.8368 -0.0740 26 1 0.0752 -2.3470 -1.6468 27 1 0.1072 -3.9710 -0.9190 28 1 2.7259 -3.2917 -1.7566 29 1 3.3902 -5.0933 -3.6173 30 1 2.7611 -2.3099 -4.6514 31 1 4.3108 -2.9605 -4.0371 32 1 5.3528 -2.0667 -6.5432 33 1 5.7334 -2.9457 -8.8088 34 1 4.4431 -4.8860 -9.6086 35 1 2.7777 -5.9440 -8.1399 36 1 2.1917 -6.1498 -5.3506 37 1 1.1626 -4.7161 -5.6416 38 1 1.6722 -4.5379 0.9985 39 1 2.6081 -3.1751 1.8161 40 1 0.4448 -1.8950 2.1595 41 1 -0.4920 -3.2570 1.3419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404102959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -0.809062 kcal Electronic energy + Delta-G solvation = -21784.485457 eV Core-core repulsion = 18629.061943 eV Total energy + Delta-G solvation = -3155.423514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42206 -38.80773 -36.76837 -35.27384 -33.32631 -32.00079 -31.43845 -29.44837 -27.29523 -26.35280 -25.26660 -23.07903 -21.38357 -21.13133 -20.91630 -19.60484 -19.09301 -17.01358 -16.28852 -16.17639 -15.66653 -15.25730 -14.75532 -14.72938 -14.33176 -14.00581 -13.60043 -13.27578 -13.05623 -12.91657 -12.77317 -12.56082 -12.13494 -11.72928 -11.64881 -11.25970 -11.11755 -11.08555 -11.04782 -10.93024 -10.81862 -10.54643 -10.29747 -9.68201 -9.30514 -8.99334 -8.85171 -8.53306 -8.51885 -8.30914 -8.10514 -6.10927 -4.19716 1.30976 1.34000 3.14054 3.22599 3.32059 3.33644 3.70479 3.79610 4.32661 4.34857 4.60415 4.93331 4.96114 5.03023 5.07998 5.17559 5.21831 5.30162 5.45856 5.54018 5.60573 5.77285 5.80613 5.86466 6.00824 6.06314 6.13331 6.24459 6.30971 6.39275 6.43943 6.44300 6.54279 6.63785 6.66676 6.86130 6.95259 7.06754 7.25696 7.40437 7.45761 7.78601 8.26991 8.30913 8.80779 8.85338 9.47428 10.96933 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.004127 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.623687 B = 6783.491696 C = 7771.842029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.162 3.838 11 N -0.700 5.700 12 C 0.512 3.488 13 O -0.555 6.555 14 C -0.109 4.109 15 C -0.073 4.073 16 C -0.092 4.092 17 C -0.106 4.106 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.091 4.091 22 C -0.068 4.068 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.261 0.739 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.401 0.599 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 -8.175 -11.721 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.039 3.961 11 N -0.348 5.348 12 C 0.297 3.703 13 O -0.434 6.434 14 C -0.131 4.131 15 C -0.110 4.110 16 C -0.092 4.092 17 C -0.124 4.124 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.105 4.105 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.235 0.765 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.957 -8.178 -11.857 16.456 hybrid contribution 0.842 1.112 0.134 1.401 sum 8.798 -7.067 -11.723 16.272 Atomic orbital electron populations 1.69987 1.05903 1.26844 1.48227 1.24986 0.94789 0.98951 0.94281 0.86591 0.80192 0.83871 0.77679 1.19686 1.21031 1.20931 1.20375 0.92857 0.88578 1.52001 0.92118 1.19037 0.98593 0.93946 0.85731 1.21006 0.87362 0.96922 0.90775 1.45968 1.11510 1.59657 1.17618 1.20176 0.89816 0.78150 0.82132 1.90650 1.22662 1.55799 1.74316 1.21970 0.96824 0.98314 0.95949 1.21006 1.00433 0.97596 0.91956 1.20592 0.96254 0.96091 0.96291 1.20642 0.97986 1.00019 0.93772 1.21005 1.00255 0.97205 0.95820 1.21002 0.96898 0.96749 0.99493 1.20609 0.98738 1.00380 0.93017 1.20675 0.97133 0.96430 0.94847 1.20947 0.99120 1.00542 0.89911 1.23027 0.98682 0.95653 1.07440 1.22494 0.92273 1.01082 1.02790 0.92875 0.90947 0.94477 0.76537 0.87875 0.89206 0.89686 0.86162 0.86080 0.86116 0.86299 0.90484 0.88132 0.91655 0.90346 0.89825 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.96 12.91 55.43 0.72 -23.25 16 2 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -12.58 8.63 -34.44 -0.30 -12.88 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 10 C 0.16 3.61 5.50 -4.04 -0.02 3.59 16 11 N -0.70 -13.09 5.47 -60.30 -0.33 -13.42 16 12 C 0.51 9.22 7.04 -10.99 -0.08 9.14 16 13 O -0.55 -12.01 15.50 5.55 0.09 -11.93 16 14 C -0.11 -1.49 3.47 -90.36 -0.31 -1.81 16 15 C -0.07 -0.95 6.31 -26.85 -0.17 -1.12 16 16 C -0.09 -1.18 6.14 -104.21 -0.64 -1.82 16 17 C -0.11 -1.22 10.04 -39.54 -0.40 -1.61 16 18 C -0.12 -1.28 10.05 -39.62 -0.40 -1.67 16 19 C -0.12 -1.25 10.05 -39.62 -0.40 -1.64 16 20 C -0.11 -1.22 10.04 -39.53 -0.40 -1.62 16 21 C -0.09 -1.16 6.14 -104.21 -0.64 -1.80 16 22 C -0.07 -0.91 6.10 -26.85 -0.16 -1.07 16 23 C -0.21 -4.29 9.96 -26.69 -0.27 -4.55 16 24 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 25 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 26 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 27 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.40 6.80 8.37 -40.82 -0.34 6.46 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.32 7.89 -51.93 -0.41 0.91 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.54 6.98 -51.93 -0.36 1.18 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -29.22 345.24 -10.24 -39.47 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.15 Total: 8.90 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -4.74 Total: -20.20 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.39 Total: -36.67 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.22 -10.24 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404102959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.657 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds