Wall clock time and date at job start Tue Mar 31 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00525 * 2 1 4 4 H 1.48504 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47151 * 300.00387 * 3 2 1 6 6 H 1.48499 * 109.46867 * 59.99874 * 3 2 1 7 7 C 1.37881 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99815 * 173.54709 * 7 2 1 9 9 C 1.50704 * 120.00040 * 353.55590 * 7 2 1 10 10 C 1.52994 * 115.55356 * 85.40118 * 9 7 2 11 11 N 1.46500 * 109.47108 * 65.14102 * 10 9 7 12 12 C 1.34778 * 120.00309 * 178.27402 * 11 10 9 13 13 O 1.21284 * 119.99680 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00321 * 180.02562 * 12 11 10 15 15 C 1.54343 * 110.82207 * 292.97171 * 14 12 11 16 16 C 1.51369 * 105.17517 * 215.42414 * 15 14 12 17 17 C 1.38489 * 130.39542 * 197.19008 * 16 15 14 18 18 C 1.38110 * 120.21597 * 180.02562 * 17 16 15 19 19 C 1.38255 * 119.93475 * 359.97438 * 18 17 16 20 20 C 1.38109 * 119.93414 * 0.02562 * 19 18 17 21 21 C 1.38225 * 109.75121 * 17.18713 * 16 15 14 22 22 C 1.51359 * 109.76174 * 0.02562 * 21 16 15 23 23 C 1.53002 * 117.49624 * 231.07264 * 9 7 2 24 24 C 1.53003 * 117.49484 * 299.73173 * 9 7 2 25 25 H 0.97001 * 119.99483 * 5.05610 * 1 2 3 26 26 H 1.09003 * 109.47577 * 305.14588 * 10 9 7 27 27 H 1.08997 * 109.47173 * 185.14298 * 10 9 7 28 28 H 0.97000 * 120.00105 * 358.27436 * 11 10 9 29 29 H 1.09000 * 110.73139 * 56.59164 * 14 12 11 30 30 H 1.09001 * 110.30412 * 334.35269 * 15 14 12 31 31 H 1.09007 * 110.30550 * 96.49926 * 15 14 12 32 32 H 1.08003 * 119.89633 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.03309 * 180.02562 * 18 17 16 34 34 H 1.07989 * 120.03304 * 179.97438 * 19 18 17 35 35 H 1.07992 * 119.89117 * 180.02562 * 20 19 18 36 36 H 1.09007 * 110.30580 * 223.88759 * 22 21 16 37 37 H 1.08996 * 110.39125 * 101.77443 * 22 21 16 38 38 H 1.08997 * 117.49890 * 214.99691 * 23 9 7 39 39 H 1.09002 * 117.49974 * 0.02858 * 23 9 7 40 40 H 1.08995 * 117.50142 * 359.97438 * 24 9 7 41 41 H 1.09006 * 117.49761 * 144.97335 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1046 9 6 1.2580 -2.4950 0.1476 10 6 0.7018 -3.0870 -1.1489 11 7 1.8108 -3.4602 -2.0305 12 6 1.5595 -4.0376 -3.2221 13 8 0.4153 -4.2479 -3.5648 14 6 2.7003 -4.4220 -4.1287 15 6 3.4335 -3.1678 -4.6499 16 6 3.8498 -3.5113 -6.0640 17 6 4.7874 -2.9179 -6.8927 18 6 5.0012 -3.4105 -8.1652 19 6 4.2776 -4.4998 -8.6138 20 6 3.3421 -5.0929 -7.7889 21 6 3.1265 -4.6004 -6.5125 22 6 2.1742 -5.0628 -5.4307 23 6 1.7469 -3.4729 1.2180 24 6 0.4416 -2.7004 1.4252 25 1 -0.4849 0.8368 -0.0740 26 1 0.0752 -2.3470 -1.6468 27 1 0.1072 -3.9710 -0.9190 28 1 2.7259 -3.2917 -1.7566 29 1 3.3902 -5.0933 -3.6173 30 1 2.7611 -2.3099 -4.6514 31 1 4.3108 -2.9605 -4.0371 32 1 5.3528 -2.0667 -6.5432 33 1 5.7334 -2.9457 -8.8088 34 1 4.4431 -4.8860 -9.6086 35 1 2.7777 -5.9440 -8.1399 36 1 2.1917 -6.1498 -5.3506 37 1 1.1626 -4.7161 -5.6416 38 1 1.6722 -4.5379 0.9985 39 1 2.6081 -3.1751 1.8161 40 1 0.4448 -1.8950 2.1595 41 1 -0.4920 -3.2570 1.3419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404102959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:03 Heat of formation + Delta-G solvation = -15.877643 kcal Electronic energy + Delta-G solvation = -21785.138880 eV Core-core repulsion = 18629.061943 eV Total energy + Delta-G solvation = -3156.076937 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52915 -40.12276 -38.48864 -36.32408 -34.96194 -33.96368 -32.30890 -30.50784 -28.34070 -27.98271 -27.09707 -24.22198 -22.96125 -22.30152 -21.78911 -21.31681 -20.62842 -18.45960 -17.93014 -17.10683 -16.87470 -16.67041 -16.55174 -15.92530 -15.71182 -15.44553 -15.10745 -14.52261 -14.13847 -14.08821 -13.91386 -13.76146 -13.56771 -13.45984 -13.14047 -12.93120 -12.84168 -12.33480 -12.18595 -12.14641 -12.07985 -12.03444 -11.65593 -11.47528 -10.89085 -10.84271 -10.46217 -10.05178 -9.83224 -9.69479 -9.41181 -8.09851 -6.22801 0.45227 0.49956 1.40986 1.45152 1.54038 1.68746 2.33226 2.43330 2.86242 3.18869 3.34520 3.45147 3.59671 3.95102 4.05372 4.15144 4.19960 4.24179 4.32114 4.37826 4.55983 4.65135 4.65857 4.70001 4.73280 4.74919 4.87081 4.90239 5.00153 5.05549 5.09134 5.19565 5.26293 5.27503 5.56966 5.58298 5.60859 5.63518 5.68502 5.75344 5.78756 6.13795 6.37039 6.76294 6.85657 7.37210 7.47088 8.97913 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.004127 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.623687 B = 6783.491696 C = 7771.842029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.006 3.994 10 C 0.178 3.822 11 N -0.694 5.694 12 C 0.512 3.488 13 O -0.595 6.595 14 C -0.099 4.099 15 C -0.069 4.069 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.065 4.065 23 C -0.175 4.175 24 C -0.162 4.162 25 H 0.258 0.742 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.411 0.589 29 H 0.134 0.866 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -9.044 -12.827 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.005 3.995 10 C 0.054 3.946 11 N -0.343 5.343 12 C 0.299 3.701 13 O -0.477 6.477 14 C -0.120 4.120 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.103 4.103 23 C -0.212 4.212 24 C -0.200 4.200 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.247 0.753 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.802 -9.054 -12.961 19.147 hybrid contribution -0.032 1.350 0.415 1.413 sum 10.770 -7.704 -12.546 18.241 Atomic orbital electron populations 1.70116 1.07332 1.27204 1.49987 1.25698 0.95400 1.02060 0.94423 0.85663 0.79669 0.80195 0.77054 1.18282 1.21508 1.21228 1.20701 0.93206 0.89462 1.50611 0.91587 1.19057 0.99631 0.94536 0.86242 1.20559 0.87884 0.95448 0.90709 1.45845 1.11115 1.59699 1.17639 1.20934 0.90460 0.76808 0.81892 1.90632 1.24836 1.57250 1.75011 1.21959 0.95432 0.99287 0.95277 1.20943 1.00431 0.96175 0.93082 1.20639 0.97385 0.96776 0.96236 1.20906 0.97818 1.00446 0.94267 1.21388 1.00355 0.96968 0.95553 1.21389 0.95883 0.96303 1.00472 1.20898 0.99163 1.00963 0.92520 1.20705 0.97471 0.97142 0.95551 1.20868 0.97891 1.01373 0.90146 1.23017 0.97298 0.96283 1.04624 1.22435 0.93806 1.01452 1.02290 0.93306 0.95428 0.94658 0.75265 0.84835 0.91711 0.87822 0.84890 0.83414 0.83314 0.84758 0.88999 0.90938 0.89247 0.89444 0.91868 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.25 12.91 21.45 0.28 -50.98 16 2 C 0.02 1.30 5.39 84.66 0.46 1.76 16 3 Si 0.95 41.75 29.55 68.60 2.03 43.78 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.50 -25.11 8.63 25.60 0.22 -24.89 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.14 16 9 C 0.01 0.28 1.38 -52.93 -0.07 0.20 16 10 C 0.18 8.11 5.50 86.38 0.48 8.58 16 11 N -0.69 -25.93 5.47 -463.07 -2.54 -28.46 16 12 C 0.51 18.57 7.04 87.65 0.62 19.18 16 13 O -0.60 -26.66 15.50 -3.04 -0.05 -26.71 16 14 C -0.10 -2.61 3.47 -10.62 -0.04 -2.65 16 15 C -0.07 -1.75 6.31 30.52 0.19 -1.56 16 16 C -0.11 -2.69 6.14 -19.59 -0.12 -2.81 16 17 C -0.12 -2.42 10.04 22.30 0.22 -2.19 16 18 C -0.12 -2.17 10.05 22.24 0.22 -1.95 16 19 C -0.12 -2.10 10.05 22.24 0.22 -1.88 16 20 C -0.12 -2.39 10.04 22.30 0.22 -2.16 16 21 C -0.11 -2.65 6.14 -19.60 -0.12 -2.77 16 22 C -0.07 -1.72 6.10 30.52 0.19 -1.53 16 23 C -0.18 -6.79 9.96 30.62 0.30 -6.48 16 24 C -0.16 -7.30 9.42 30.62 0.29 -7.01 16 25 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.59 8.09 -2.39 -0.02 1.57 16 28 H 0.41 13.49 8.37 -92.71 -0.78 12.71 16 29 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.06 1.95 7.89 -2.39 -0.02 1.93 16 31 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.15 1.66 8.06 -2.92 -0.02 1.64 16 35 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.07 2.31 6.98 -2.39 -0.02 2.29 16 38 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 Total: -1.00 -64.38 345.24 3.25 -61.13 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.25 Total: 29.40 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.29 Total: -28.16 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.26 Total: -79.44 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -64.38 3.25 -61.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404102959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.252 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds