Wall clock time and date at job start Tue Mar 31 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47301 * 270.00145 * 3 2 1 5 5 H 1.48501 * 109.47452 * 30.00124 * 3 2 1 6 6 H 1.48497 * 109.47306 * 150.00247 * 3 2 1 7 7 C 1.37872 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00202 * 175.50629 * 7 2 1 9 9 C 1.50698 * 119.99956 * 355.78076 * 7 2 1 10 10 C 1.52995 * 115.55276 * 35.31804 * 9 7 2 11 11 N 1.46506 * 109.47197 * 54.24175 * 10 9 7 12 12 C 1.34768 * 120.00233 * 184.99930 * 11 10 9 13 13 O 1.21555 * 120.00281 * 5.06939 * 12 11 10 14 14 C 1.47844 * 120.00073 * 185.07396 * 12 11 10 15 15 C 1.39591 * 120.19022 * 5.14533 * 14 12 11 16 16 C 1.37796 * 119.79416 * 179.97438 * 15 14 12 17 17 C 1.38665 * 120.40869 * 0.02562 * 16 15 14 18 18 C 1.38373 * 120.07874 * 359.97438 * 17 16 15 19 19 C 1.38237 * 119.99663 * 359.74037 * 18 17 16 20 20 C 1.51395 * 109.74631 * 179.97438 * 18 17 16 21 21 C 1.54331 * 105.17299 * 17.22615 * 20 18 17 22 22 C 1.51424 * 130.22171 * 179.97438 * 17 16 15 23 23 C 1.53005 * 117.49679 * 249.64790 * 9 7 2 24 24 C 1.53001 * 117.50072 * 180.99163 * 9 7 2 25 25 H 0.96998 * 119.99917 * 4.99782 * 1 2 3 26 26 H 1.09005 * 109.47581 * 174.23735 * 10 9 7 27 27 H 1.09000 * 109.47299 * 294.24558 * 10 9 7 28 28 H 0.96999 * 119.99407 * 4.99480 * 11 10 9 29 29 H 1.08009 * 120.10076 * 359.97438 * 15 14 12 30 30 H 1.07996 * 119.79900 * 180.02562 * 16 15 14 31 31 H 1.07996 * 119.95193 * 180.27241 * 19 18 17 32 32 H 1.09007 * 110.30404 * 136.14821 * 20 18 17 33 33 H 1.09004 * 110.30751 * 258.20121 * 20 18 17 34 34 H 1.08997 * 110.81754 * 91.81464 * 21 20 18 35 35 H 1.08998 * 110.81810 * 215.15820 * 21 20 18 36 36 H 1.09003 * 110.29914 * 281.69768 * 22 17 16 37 37 H 1.09000 * 110.30292 * 43.84133 * 22 17 16 38 38 H 1.08998 * 117.50097 * 0.02562 * 23 9 7 39 39 H 1.09007 * 117.49449 * 145.02079 * 23 9 7 40 40 H 1.08997 * 117.50076 * 214.97900 * 24 9 7 41 41 H 1.08999 * 117.49743 * 359.97420 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1954 -0.0738 9 6 1.2541 -2.4974 0.0949 10 6 -0.0994 -2.5332 -0.6174 11 7 0.0748 -2.1376 -2.0173 12 6 -1.0009 -1.9984 -2.8171 13 8 -2.1199 -2.1106 -2.3558 14 6 -0.8200 -1.7094 -4.2557 15 6 0.4603 -1.6860 -4.8114 16 6 0.6194 -1.4163 -6.1533 17 6 -0.4844 -1.1674 -6.9549 18 6 -1.7562 -1.1892 -6.4101 19 6 -1.9278 -1.4645 -5.0664 20 6 -2.7785 -0.8881 -7.4854 21 6 -2.0382 -1.1130 -8.8208 22 6 -0.5677 -0.8508 -8.4333 23 6 1.3917 -3.2984 1.3912 24 6 2.0773 -3.7869 0.1128 25 1 -0.4850 0.8368 -0.0732 26 1 -0.5066 -3.5434 -0.5734 27 1 -0.7862 -1.8430 -0.1276 28 1 0.9644 -1.9758 -2.3683 29 1 1.3235 -1.8787 -4.1915 30 1 1.6099 -1.3985 -6.5834 31 1 -2.9210 -1.4856 -4.6428 32 1 -3.6256 -1.5691 -7.4033 33 1 -3.1160 0.1455 -7.4078 34 1 -2.1700 -2.1375 -9.1690 35 1 -2.3760 -0.4027 -9.5754 36 1 -0.3109 0.1935 -8.6115 37 1 0.0954 -1.5058 -8.9984 38 1 2.0245 -2.8825 2.1751 39 1 0.5178 -3.8513 1.7363 40 1 1.6545 -4.6609 -0.3826 41 1 3.1617 -3.6926 0.0552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404143317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:38 Heat of formation + Delta-G solvation = -9.584486 kcal Electronic energy + Delta-G solvation = -22059.246087 eV Core-core repulsion = 18903.442042 eV Total energy + Delta-G solvation = -3155.804045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35572 -40.07647 -38.44986 -36.40152 -34.80304 -34.13267 -32.42409 -30.39256 -28.34805 -27.80329 -27.11507 -23.86546 -23.06410 -22.87916 -21.67708 -21.14617 -20.62664 -18.83226 -17.85601 -16.99993 -16.75291 -16.49393 -16.31516 -15.88405 -15.83919 -15.61364 -14.87435 -14.66338 -14.43118 -13.94362 -13.72414 -13.69926 -13.48483 -13.29842 -12.91450 -12.78684 -12.59748 -12.45995 -12.29813 -12.04569 -12.00842 -11.81361 -11.65675 -11.56733 -10.97201 -10.80312 -10.65726 -10.17273 -9.88045 -9.72486 -9.41818 -7.94705 -6.21565 -0.09193 0.38302 1.39646 1.44239 1.52233 1.98462 2.39347 2.47869 2.90704 3.06549 3.46567 3.62486 3.63187 3.93946 4.07132 4.17163 4.21883 4.26429 4.32573 4.41486 4.52460 4.70331 4.72751 4.73822 4.79623 4.89094 4.95413 4.97835 5.04491 5.11540 5.14592 5.22151 5.28757 5.35259 5.38938 5.46590 5.52090 5.58582 5.59218 5.85019 5.95878 5.97634 6.35497 6.76415 6.94207 7.44082 7.48705 8.90620 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.004529 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.126495 B = 6181.143143 C = 6705.799276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.034 3.966 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.006 3.994 10 C 0.174 3.826 11 N -0.670 5.670 12 C 0.541 3.459 13 O -0.603 6.603 14 C -0.147 4.147 15 C -0.091 4.091 16 C -0.113 4.113 17 C -0.080 4.080 18 C -0.118 4.118 19 C -0.072 4.072 20 C -0.084 4.084 21 C -0.112 4.112 22 C -0.081 4.081 23 C -0.199 4.199 24 C -0.184 4.184 25 H 0.255 0.745 26 H 0.017 0.983 27 H 0.080 0.920 28 H 0.403 0.597 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -1.725 -18.546 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.168 4.168 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.005 3.995 10 C 0.050 3.950 11 N -0.316 5.316 12 C 0.329 3.671 13 O -0.487 6.487 14 C -0.150 4.150 15 C -0.110 4.110 16 C -0.131 4.131 17 C -0.081 4.081 18 C -0.118 4.118 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.150 4.150 22 C -0.117 4.117 23 C -0.238 4.238 24 C -0.221 4.221 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.239 0.761 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.115 -1.698 -18.112 18.192 hybrid contribution 0.524 0.891 0.927 1.389 sum 0.409 -0.807 -17.185 17.209 Atomic orbital electron populations 1.70068 1.06907 1.26588 1.49205 1.25622 0.95299 1.01784 0.94089 0.85698 0.78742 0.79890 0.78213 1.20038 1.21967 1.19101 1.20702 0.92751 0.89408 1.51219 0.92067 1.19270 0.93173 0.90839 0.96223 1.20786 0.97980 0.95377 0.80838 1.45446 1.08649 1.66386 1.11073 1.18685 0.84448 0.76937 0.86984 1.90636 1.25838 1.54818 1.77394 1.19894 0.95669 1.07041 0.92414 1.21414 0.95471 0.97785 0.96319 1.20867 0.99890 1.00213 0.92143 1.21315 0.92653 0.96105 0.97982 1.20890 0.97564 1.00181 0.93163 1.20692 0.97969 0.97349 0.93098 1.21175 0.96475 1.02594 0.91816 1.22321 0.93341 1.03387 0.95918 1.21203 0.98552 1.03205 0.88756 1.22962 1.02232 1.06165 0.92405 1.22955 0.98696 0.98619 1.01864 0.93566 0.96509 0.90216 0.76135 0.84609 0.82620 0.86899 0.90270 0.89485 0.90270 0.88123 0.88659 0.88606 0.90311 0.90667 0.89716 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.94 10.11 21.45 0.22 -49.73 16 2 C 0.03 1.75 5.31 84.65 0.45 2.20 16 3 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.50 -25.56 8.43 25.60 0.22 -25.34 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.01 0.27 2.04 -52.93 -0.11 0.16 16 10 C 0.17 8.66 4.62 86.38 0.40 9.06 16 11 N -0.67 -30.67 4.97 -465.97 -2.31 -32.98 16 12 C 0.54 25.29 7.76 86.79 0.67 25.96 16 13 O -0.60 -32.62 16.34 -3.89 -0.06 -32.68 16 14 C -0.15 -5.60 5.87 -20.12 -0.12 -5.72 16 15 C -0.09 -2.83 9.51 22.49 0.21 -2.61 16 16 C -0.11 -2.76 10.02 22.27 0.22 -2.54 16 17 C -0.08 -1.84 6.14 -19.50 -0.12 -1.96 16 18 C -0.12 -3.14 6.12 -19.61 -0.12 -3.26 16 19 C -0.07 -2.50 9.59 22.56 0.22 -2.29 16 20 C -0.08 -1.55 6.77 30.52 0.21 -1.34 16 21 C -0.11 -1.41 7.08 31.49 0.22 -1.18 16 22 C -0.08 -1.14 6.77 30.52 0.21 -0.94 16 23 C -0.20 -8.58 9.96 30.62 0.30 -8.27 16 24 C -0.18 -7.33 9.92 30.62 0.30 -7.02 16 25 H 0.25 14.21 8.32 -92.71 -0.77 13.44 16 26 H 0.02 0.82 8.09 -2.38 -0.02 0.80 16 27 H 0.08 4.64 5.89 -2.39 -0.01 4.63 16 28 H 0.40 17.06 6.22 -92.71 -0.58 16.48 16 29 H 0.14 3.94 6.49 -2.91 -0.02 3.93 16 30 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.11 4.19 7.65 -2.91 -0.02 4.16 16 32 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 39 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -65.79 338.15 3.49 -62.30 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.46 Total: 34.18 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.17 Total: -25.10 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -2.10 Total: -82.71 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.06 Total: -32.68 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -65.79 3.49 -62.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404143317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.715 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds