Wall clock time and date at job start Tue Mar 31 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47104 * 2 1 4 4 C 1.53004 * 109.47025 * 240.00823 * 2 1 3 5 5 C 1.50701 * 109.46998 * 175.00191 * 4 2 1 6 6 H 1.07999 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99445 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00292 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99460 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47507 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46703 * 119.99737 * 9 7 5 12 12 H 1.48495 * 109.47169 * 239.99429 * 9 7 5 13 13 S 1.80999 * 109.47482 * 120.00511 * 2 1 3 14 14 C 1.76204 * 99.99936 * 295.00172 * 13 2 1 15 15 N 1.31542 * 126.45151 * 0.02562 * 14 13 2 16 16 N 1.28424 * 110.50095 * 180.02562 * 15 14 13 17 17 N 1.28908 * 110.34074 * 0.02562 * 16 15 14 18 18 N 1.35389 * 126.45445 * 180.02562 * 14 13 2 19 19 C 1.46498 * 127.38474 * 359.97438 * 18 14 13 20 20 C 1.53008 * 109.47064 * 269.97379 * 19 18 14 21 21 N 1.46898 * 109.47307 * 179.97438 * 20 19 18 22 22 C 1.46900 * 111.00211 * 170.00305 * 21 20 19 23 23 C 1.46906 * 111.00141 * 293.95562 * 21 20 19 24 24 H 1.08998 * 109.47164 * 59.99488 * 1 2 3 25 25 H 1.09005 * 109.47104 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46707 * 299.99336 * 1 2 3 27 27 H 1.09003 * 109.46385 * 294.99551 * 4 2 1 28 28 H 1.08989 * 109.47242 * 54.99472 * 4 2 1 29 29 H 0.96998 * 119.99879 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47501 * 29.97350 * 19 18 14 31 31 H 1.09003 * 109.47772 * 149.97691 * 19 18 14 32 32 H 1.09000 * 109.47179 * 299.99854 * 20 19 18 33 33 H 1.08999 * 109.46818 * 60.00029 * 20 19 18 34 34 H 1.08995 * 109.46772 * 59.99764 * 22 21 20 35 35 H 1.08991 * 109.47119 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.46596 * 299.99771 * 22 21 20 37 37 H 1.09006 * 109.46912 * 59.99824 * 23 21 20 38 38 H 1.08995 * 109.47240 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.47021 * 300.00391 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1933 -2.3580 8 7 3.5764 -1.8383 -3.2992 9 14 6.0920 -1.0609 -2.4370 10 1 6.5836 -0.2897 -1.2671 11 1 6.6861 -2.4217 -2.4186 12 1 6.4861 -0.3657 -3.6886 13 16 2.1334 -0.8533 1.4777 14 6 1.5440 0.2420 2.7257 15 7 0.8615 1.3501 2.5343 16 7 0.5894 1.9105 3.6573 17 7 1.0685 1.2164 4.6321 18 7 1.7082 0.1017 4.0623 19 6 2.4040 -0.9796 4.7643 20 6 1.4135 -2.1015 5.0824 21 7 2.1113 -3.1861 5.7858 22 6 1.1572 -4.1694 6.3156 23 6 3.1000 -3.8304 4.9109 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.7516 -1.7714 -1.2057 28 1 1.6053 -0.2616 -2.1370 29 1 4.0608 -2.2456 -4.0343 30 1 3.2026 -1.3683 4.1323 31 1 2.8289 -0.5963 5.6920 32 1 0.6149 -1.7129 5.7144 33 1 0.9886 -2.4849 4.1547 34 1 0.5834 -4.5980 5.4941 35 1 1.7003 -4.9609 6.8318 36 1 0.4800 -3.6784 7.0146 37 1 3.8352 -3.0930 4.5886 38 1 3.6022 -4.6291 5.4566 39 1 2.5965 -4.2468 4.0384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412989090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:09 Heat of formation + Delta-G solvation = 111.578776 kcal Electronic energy + Delta-G solvation = -20414.684860 eV Core-core repulsion = 17328.331207 eV Total energy + Delta-G solvation = -3086.353653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.62374 -38.14635 -35.08473 -34.66659 -32.39874 -31.71953 -30.06227 -27.89151 -27.60701 -25.57967 -23.43927 -23.27109 -22.82354 -21.52022 -20.59086 -17.84578 -16.75521 -16.50308 -16.39613 -15.89888 -15.30494 -15.15515 -14.74531 -14.61605 -14.23649 -13.23976 -13.04938 -12.91724 -12.80188 -12.52336 -12.23237 -12.14773 -11.99236 -11.96787 -11.69297 -11.36103 -11.35742 -11.07099 -10.87758 -10.72664 -10.61145 -10.55186 -10.25256 -9.76191 -9.64007 -9.29156 -8.78920 -8.52101 -7.54347 -6.16424 -4.19942 1.07363 1.16520 2.17785 2.45436 2.57000 3.23077 3.31769 3.35855 3.64976 4.22425 4.34277 4.44601 4.77829 4.86020 4.96615 5.09284 5.11272 5.21348 5.24259 5.36756 5.45249 5.54255 5.55372 5.58455 5.63371 5.70779 5.71671 6.01218 6.13999 6.40750 6.48005 6.55184 6.59294 6.65619 7.37594 7.39711 7.80001 8.14242 8.63477 8.85213 9.45619 10.94316 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.005051 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.174427 B = 5541.755452 C = 6593.038949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 H 0.097 0.903 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 S 0.048 5.952 14 C 0.219 3.781 15 N -0.338 5.338 16 N -0.039 5.039 17 N -0.099 5.099 18 N -0.373 5.373 19 C 0.127 3.873 20 C 0.039 3.961 21 N -0.542 5.542 22 C 0.025 3.975 23 C 0.012 3.988 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 -4.546 15.445 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 H 0.115 0.885 4 C -0.002 4.002 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 S 0.275 5.725 14 C -0.164 4.164 15 N -0.195 5.195 16 N -0.035 5.035 17 N -0.086 5.086 18 N -0.172 5.172 19 C 0.004 3.996 20 C -0.091 4.091 21 N -0.267 5.267 22 C -0.123 4.123 23 C -0.136 4.136 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.042 -4.277 16.257 17.083 hybrid contribution 0.474 -0.041 -1.009 1.116 sum -2.567 -4.318 15.248 16.054 Atomic orbital electron populations 1.22150 0.93776 1.02072 1.02851 1.23832 0.97843 1.02918 0.94317 0.88504 1.19134 0.96641 0.95656 0.88798 1.21282 0.91359 1.35194 1.08818 0.91760 1.24977 0.98617 0.94927 0.95423 1.69952 1.35721 1.35289 1.11955 0.86534 0.85461 0.77903 0.78212 1.19495 1.20901 1.20896 1.86278 1.66035 1.25758 0.94412 1.28606 0.98232 0.99710 0.89841 1.74967 1.19148 1.06706 1.18654 1.77800 1.12880 1.19536 0.93312 1.82368 1.12973 0.94537 1.18734 1.51458 1.41662 1.20026 1.04087 1.21951 0.94287 0.84213 0.99179 1.22429 0.96161 0.91788 0.98685 1.61916 1.16490 1.11505 1.36761 1.22391 0.95382 0.95134 0.99389 1.22578 0.95716 0.99707 0.95605 0.91417 0.92480 0.91783 0.95367 0.93745 0.92780 0.87431 0.86708 0.89632 0.93134 0.95166 0.90850 0.91217 0.90798 0.90821 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.01 37.16 0.33 -2.20 16 2 C -0.06 -1.16 2.29 -26.73 -0.06 -1.22 16 3 H 0.10 1.96 8.14 -51.91 -0.42 1.54 16 4 C 0.04 0.85 4.44 -27.88 -0.12 0.73 16 5 C -0.53 -13.58 8.53 -34.44 -0.29 -13.87 16 6 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 S 0.05 0.83 20.54 -107.50 -2.21 -1.37 16 14 C 0.22 3.72 7.84 -89.18 -0.70 3.02 16 15 N -0.34 -6.30 9.70 30.50 0.30 -6.00 16 16 N -0.04 -0.73 13.38 60.35 0.81 0.08 16 17 N -0.10 -1.66 13.93 60.35 0.84 -0.81 16 18 N -0.37 -5.58 3.69 -61.30 -0.23 -5.80 16 19 C 0.13 1.41 6.30 -4.04 -0.03 1.38 16 20 C 0.04 0.40 5.28 -3.82 -0.02 0.38 16 21 N -0.54 -4.90 5.02 -251.25 -1.26 -6.16 16 22 C 0.03 0.19 9.57 60.06 0.57 0.76 16 23 C 0.01 0.10 9.32 60.07 0.56 0.66 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.09 5.91 -51.93 -0.31 0.78 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 1.10 8.14 -51.94 -0.42 0.68 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.11 1.13 6.26 -51.93 -0.33 0.80 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 33 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 37 H 0.07 0.61 6.47 -51.93 -0.34 0.27 16 38 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -29.00 338.68 -6.77 -35.77 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.99 Total: -3.26 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.15 Total: -8.78 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 1.19 Total: -42.93 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.21 Total: -1.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.00 -6.77 -35.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412989090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.349 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds