Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 H 1.08002 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99982 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47112 * 89.99958 * 9 7 5 11 11 H 1.48507 * 109.47446 * 210.00251 * 9 7 5 12 12 H 1.48501 * 109.47194 * 330.00187 * 9 7 5 13 13 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 14 14 C 1.76198 * 99.99953 * 65.00014 * 13 2 1 15 15 N 1.31540 * 126.45444 * 359.69429 * 14 13 2 16 16 N 1.28418 * 110.50387 * 179.81610 * 15 14 13 17 17 N 1.28912 * 110.33856 * 0.45437 * 16 15 14 18 18 N 1.35395 * 126.45081 * 179.97438 * 14 13 2 19 19 C 1.46500 * 127.38943 * 359.96857 * 18 14 13 20 20 C 1.53004 * 109.47377 * 89.99776 * 19 18 14 21 21 N 1.46900 * 109.47002 * 180.02562 * 20 19 18 22 22 C 1.46902 * 110.99734 * 170.00236 * 21 20 19 23 23 C 1.46896 * 110.99690 * 293.94788 * 21 20 19 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 28 28 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 29 29 H 0.97003 * 119.99535 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47634 * 210.00050 * 19 18 14 31 31 H 1.09005 * 109.46819 * 329.99776 * 19 18 14 32 32 H 1.09004 * 109.46641 * 300.00398 * 20 19 18 33 33 H 1.08997 * 109.46582 * 59.99952 * 20 19 18 34 34 H 1.09005 * 109.47206 * 59.99346 * 22 21 20 35 35 H 1.08990 * 109.47083 * 179.97438 * 22 21 20 36 36 H 1.08997 * 109.46976 * 299.99677 * 22 21 20 37 37 H 1.09007 * 109.47176 * 60.00821 * 23 21 20 38 38 H 1.09000 * 109.46956 * 180.02562 * 23 21 20 39 39 H 1.08999 * 109.47845 * 300.00385 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.3000 9 14 6.0919 -1.0605 2.4373 10 1 6.4697 0.1623 3.1906 11 1 6.6445 -2.2556 3.1242 12 1 6.6416 -0.9829 1.0599 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2422 -2.7257 15 7 0.8571 1.3477 -2.5344 16 7 0.5892 1.9107 -3.6571 17 7 1.0670 1.2159 -4.6321 18 7 1.7080 0.1019 -4.0623 19 6 2.4048 -0.9788 -4.7644 20 6 1.4154 -2.1020 -5.0817 21 7 2.1143 -3.1858 -5.7852 22 6 1.2613 -4.3766 -5.8970 23 6 2.5761 -2.7431 -7.1075 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0607 -2.2439 4.0354 30 1 2.8288 -0.5952 -5.6924 31 1 3.2041 -1.3664 -4.1327 32 1 0.9915 -2.4856 -4.1536 33 1 0.6162 -1.7143 -5.7133 34 1 0.3574 -4.1253 -6.4520 35 1 1.8028 -5.1633 -6.4221 36 1 0.9906 -4.7245 -4.9001 37 1 3.2614 -1.9035 -6.9907 38 1 3.0896 -3.5648 -7.6068 39 1 1.7199 -2.4328 -7.7064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412989094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = 112.261576 kcal Electronic energy + Delta-G solvation = -20307.084496 eV Core-core repulsion = 17220.760452 eV Total energy + Delta-G solvation = -3086.324044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.61351 -38.17262 -35.08422 -34.64040 -32.37256 -31.70134 -30.06423 -27.95702 -27.57424 -25.58574 -23.40557 -23.24072 -22.86155 -21.52256 -20.57153 -17.82595 -16.76347 -16.47155 -16.38622 -15.92157 -15.33578 -15.12701 -14.77448 -14.58563 -14.24445 -13.22638 -13.05614 -12.91802 -12.79493 -12.52979 -12.36796 -12.07531 -12.00105 -11.94763 -11.65678 -11.38778 -11.31333 -11.06326 -10.82641 -10.72320 -10.61386 -10.52134 -10.23733 -9.70832 -9.60450 -9.27239 -8.80699 -8.48152 -7.50112 -6.12938 -4.16371 1.08025 1.19803 2.18691 2.46412 2.61048 3.27447 3.34345 3.37800 3.62403 4.22267 4.37612 4.43612 4.76034 4.83168 4.94382 5.02238 5.09532 5.21069 5.24846 5.27133 5.43675 5.54139 5.56383 5.59329 5.61527 5.66137 5.74381 6.04052 6.13360 6.43716 6.51201 6.53169 6.58229 6.68465 7.40716 7.43550 7.83331 8.17754 8.64171 8.88403 9.49051 10.97792 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.004726 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.906798 B = 5922.658088 C = 6838.031924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 H 0.096 0.904 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 S 0.057 5.943 14 C 0.220 3.780 15 N -0.338 5.338 16 N -0.039 5.039 17 N -0.104 5.104 18 N -0.374 5.374 19 C 0.127 3.873 20 C 0.040 3.960 21 N -0.540 5.540 22 C 0.025 3.975 23 C 0.016 3.984 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -3.825 -17.004 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 H 0.114 0.886 4 C -0.002 4.002 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.196 1.196 13 S 0.284 5.716 14 C -0.163 4.163 15 N -0.196 5.196 16 N -0.035 5.035 17 N -0.091 5.091 18 N -0.173 5.173 19 C 0.004 3.996 20 C -0.090 4.090 21 N -0.265 5.265 22 C -0.123 4.123 23 C -0.132 4.132 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.244 -3.899 -17.143 17.878 hybrid contribution 0.192 0.576 -0.211 0.643 sum -3.052 -3.322 -17.354 17.931 Atomic orbital electron populations 1.22147 0.93797 1.02090 1.02803 1.23840 0.97854 1.02947 0.94531 0.88556 1.19126 0.96598 0.95687 0.88778 1.21244 0.91382 1.35259 1.08799 0.91820 1.24970 0.98598 0.94908 0.95437 1.69947 1.35807 1.35291 1.11905 0.86588 0.85440 0.77639 0.78417 1.20560 1.21157 1.19594 1.86416 1.65713 1.25329 0.94120 1.28662 0.97998 0.99720 0.89870 1.74969 1.19163 1.06822 1.18613 1.77790 1.12877 1.19459 0.93345 1.82343 1.13270 0.94641 1.18830 1.51444 1.41655 1.20092 1.04157 1.21953 0.94665 0.83903 0.99117 1.22434 0.94911 0.91321 1.00325 1.61860 1.39877 1.05427 1.19301 1.22406 0.95124 0.92171 1.02569 1.22535 0.99899 1.01578 0.89228 0.91808 0.92435 0.91477 0.93799 0.95310 0.92747 0.87680 0.86446 0.89186 0.93582 0.95481 0.90817 0.90701 0.91027 0.90814 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.01 37.16 0.33 -2.20 16 2 C -0.06 -1.21 2.29 -26.73 -0.06 -1.28 16 3 H 0.10 1.96 8.14 -51.92 -0.42 1.53 16 4 C 0.04 0.87 4.44 -27.88 -0.12 0.74 16 5 C -0.53 -13.71 8.53 -34.44 -0.29 -14.00 16 6 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 S 0.06 1.00 20.54 -107.50 -2.21 -1.21 16 14 C 0.22 3.75 7.84 -89.18 -0.70 3.05 16 15 N -0.34 -6.32 9.69 30.50 0.30 -6.02 16 16 N -0.04 -0.72 13.38 60.35 0.81 0.09 16 17 N -0.10 -1.73 13.93 60.35 0.84 -0.89 16 18 N -0.37 -5.60 3.69 -61.30 -0.23 -5.83 16 19 C 0.13 1.41 6.30 -4.04 -0.03 1.38 16 20 C 0.04 0.40 5.28 -3.82 -0.02 0.38 16 21 N -0.54 -4.88 5.02 -251.26 -1.26 -6.14 16 22 C 0.03 0.19 9.57 60.07 0.57 0.77 16 23 C 0.02 0.11 9.32 60.06 0.56 0.67 16 24 H 0.06 1.09 5.90 -51.93 -0.31 0.78 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.04 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.11 0.98 6.55 -51.93 -0.34 0.64 16 31 H 0.12 1.29 7.85 -51.93 -0.41 0.88 16 32 H 0.09 0.99 8.06 -51.93 -0.42 0.57 16 33 H 0.05 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.07 0.48 6.47 -51.93 -0.34 0.15 16 38 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -29.29 338.66 -6.77 -36.06 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.99 Total: -3.55 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 0.15 Total: -8.87 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 1.19 Total: -43.22 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.21 Total: -1.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.29 -6.77 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412989094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.324 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds