Wall clock time and date at job start Tue Mar 31 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 H 1.08002 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99982 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47112 * 89.99958 * 9 7 5 11 11 H 1.48507 * 109.47446 * 210.00251 * 9 7 5 12 12 H 1.48501 * 109.47194 * 330.00187 * 9 7 5 13 13 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 14 14 C 1.76198 * 99.99953 * 65.00014 * 13 2 1 15 15 N 1.31540 * 126.45444 * 359.69429 * 14 13 2 16 16 N 1.28418 * 110.50387 * 179.81610 * 15 14 13 17 17 N 1.28912 * 110.33856 * 0.45437 * 16 15 14 18 18 N 1.35395 * 126.45081 * 179.97438 * 14 13 2 19 19 C 1.46500 * 127.38943 * 359.96857 * 18 14 13 20 20 C 1.53004 * 109.47377 * 89.99776 * 19 18 14 21 21 N 1.46900 * 109.47002 * 180.02562 * 20 19 18 22 22 C 1.46902 * 110.99734 * 170.00236 * 21 20 19 23 23 C 1.46896 * 110.99690 * 293.94788 * 21 20 19 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 28 28 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 29 29 H 0.97003 * 119.99535 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47634 * 210.00050 * 19 18 14 31 31 H 1.09005 * 109.46819 * 329.99776 * 19 18 14 32 32 H 1.09004 * 109.46641 * 300.00398 * 20 19 18 33 33 H 1.08997 * 109.46582 * 59.99952 * 20 19 18 34 34 H 1.09005 * 109.47206 * 59.99346 * 22 21 20 35 35 H 1.08990 * 109.47083 * 179.97438 * 22 21 20 36 36 H 1.08997 * 109.46976 * 299.99677 * 22 21 20 37 37 H 1.09007 * 109.47176 * 60.00821 * 23 21 20 38 38 H 1.09000 * 109.46956 * 180.02562 * 23 21 20 39 39 H 1.08999 * 109.47845 * 300.00385 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.3000 9 14 6.0919 -1.0605 2.4373 10 1 6.4697 0.1623 3.1906 11 1 6.6445 -2.2556 3.1242 12 1 6.6416 -0.9829 1.0599 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2422 -2.7257 15 7 0.8571 1.3477 -2.5344 16 7 0.5892 1.9107 -3.6571 17 7 1.0670 1.2159 -4.6321 18 7 1.7080 0.1019 -4.0623 19 6 2.4048 -0.9788 -4.7644 20 6 1.4154 -2.1020 -5.0817 21 7 2.1143 -3.1858 -5.7852 22 6 1.2613 -4.3766 -5.8970 23 6 2.5761 -2.7431 -7.1075 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0607 -2.2439 4.0354 30 1 2.8288 -0.5952 -5.6924 31 1 3.2041 -1.3664 -4.1327 32 1 0.9915 -2.4856 -4.1536 33 1 0.6162 -1.7143 -5.7133 34 1 0.3574 -4.1253 -6.4520 35 1 1.8028 -5.1633 -6.4221 36 1 0.9906 -4.7245 -4.9001 37 1 3.2614 -1.9035 -6.9907 38 1 3.0896 -3.5648 -7.6068 39 1 1.7199 -2.4328 -7.7064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412989094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:10 Heat of formation + Delta-G solvation = 93.952621 kcal Electronic energy + Delta-G solvation = -20307.878432 eV Core-core repulsion = 17220.760452 eV Total energy + Delta-G solvation = -3087.117980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.95849 -38.93003 -36.55497 -36.03198 -34.17235 -33.18714 -31.04253 -29.38609 -28.53348 -26.57361 -25.25621 -24.45592 -24.10917 -22.47255 -22.04932 -19.08705 -18.48382 -18.00031 -17.64387 -16.74642 -16.60836 -16.48990 -16.15122 -15.53730 -15.19191 -14.83707 -14.34452 -14.27806 -13.80596 -13.75244 -13.58197 -13.27912 -13.15877 -13.04407 -12.75536 -12.68343 -12.62525 -12.57052 -12.36826 -12.25325 -12.04899 -11.97262 -11.54865 -11.38905 -11.27071 -11.15287 -10.52483 -9.47952 -8.91333 -8.17673 -6.26796 -0.23699 -0.18848 0.99089 1.07064 1.12470 1.44797 1.46271 1.56207 2.44457 2.91955 3.14589 3.18483 3.58266 3.66773 3.98536 4.06644 4.09429 4.17347 4.19219 4.25335 4.44674 4.53188 4.55319 4.58848 4.71409 4.74033 4.92671 4.95904 5.01162 5.02498 5.04498 5.25754 5.43135 5.51495 5.79770 5.84019 5.95130 6.17870 6.85635 7.27864 7.42259 8.93544 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.004726 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.906798 B = 5922.658088 C = 6838.031924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 H 0.086 0.914 4 C 0.045 3.955 5 C -0.537 4.537 6 H 0.066 0.934 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.262 1.262 13 S 0.076 5.924 14 C 0.215 3.785 15 N -0.355 5.355 16 N -0.058 5.058 17 N -0.097 5.097 18 N -0.358 5.358 19 C 0.119 3.881 20 C 0.048 3.952 21 N -0.550 5.550 22 C 0.024 3.976 23 C 0.013 3.987 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.023 0.977 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 -4.203 -18.750 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 H 0.104 0.896 4 C 0.006 3.994 5 C -0.575 4.575 6 H 0.084 0.916 7 C -0.187 4.187 8 N -0.567 5.567 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.186 1.186 13 S 0.302 5.698 14 C -0.168 4.168 15 N -0.213 5.213 16 N -0.053 5.053 17 N -0.085 5.085 18 N -0.158 5.158 19 C -0.002 4.002 20 C -0.082 4.082 21 N -0.274 5.274 22 C -0.124 4.124 23 C -0.134 4.134 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.383 -4.281 -18.913 19.538 hybrid contribution -0.079 0.660 0.215 0.698 sum -2.461 -3.621 -18.698 19.204 Atomic orbital electron populations 1.22065 0.91923 1.02770 1.03169 1.23579 0.99422 1.01916 0.94250 0.89584 1.18900 0.95523 0.94898 0.90089 1.21588 0.92713 1.34570 1.08625 0.91604 1.25756 1.02900 0.94755 0.95245 1.70057 1.37472 1.36508 1.12636 0.85639 0.80374 0.77547 0.78753 1.20290 1.20939 1.18571 1.86226 1.65950 1.24551 0.93029 1.28426 0.98388 0.99488 0.90540 1.74907 1.19715 1.07489 1.19197 1.77790 1.13912 1.20164 0.93462 1.82274 1.12798 0.94803 1.18628 1.51665 1.40573 1.20060 1.03547 1.22339 0.94739 0.83333 0.99834 1.22286 0.94512 0.91309 1.00050 1.61890 1.39919 1.05279 1.20343 1.22456 0.95358 0.91989 1.02595 1.22615 1.00112 1.02322 0.88386 0.91557 0.91584 0.90953 0.95922 0.96903 0.92729 0.85417 0.85970 0.90226 0.93913 0.95159 0.89446 0.91166 0.90504 0.89577 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.01 71.98 0.65 -4.05 16 2 C -0.06 -2.41 2.29 30.60 0.07 -2.34 16 3 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 4 C 0.04 2.13 4.44 29.85 0.13 2.26 16 5 C -0.54 -27.86 8.53 25.60 0.22 -27.64 16 6 H 0.07 3.32 7.60 -2.91 -0.02 3.30 16 7 C 0.01 0.66 5.46 84.65 0.46 1.12 16 8 N -0.93 -52.86 13.29 21.45 0.28 -52.57 16 9 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 13 S 0.08 2.58 20.54 -56.49 -1.16 1.42 16 14 C 0.22 7.07 7.84 179.85 1.41 8.48 16 15 N -0.36 -12.96 9.69 -57.41 -0.56 -13.52 16 16 N -0.06 -2.07 13.38 37.02 0.50 -1.57 16 17 N -0.10 -3.10 13.93 37.02 0.52 -2.59 16 18 N -0.36 -10.13 3.69 -347.86 -1.28 -11.41 16 19 C 0.12 2.38 6.30 86.38 0.54 2.93 16 20 C 0.05 0.90 5.28 86.30 0.46 1.35 16 21 N -0.55 -8.77 5.02 -948.85 -4.76 -13.53 16 22 C 0.02 0.32 9.57 127.69 1.22 1.54 16 23 C 0.01 0.16 9.32 127.69 1.19 1.35 16 24 H 0.07 2.20 5.90 -2.39 -0.01 2.19 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.13 2.02 6.55 -2.39 -0.02 2.01 16 31 H 0.12 2.41 7.85 -2.38 -0.02 2.40 16 32 H 0.08 1.65 8.06 -2.38 -0.02 1.63 16 33 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 37 H 0.08 0.82 6.47 -2.38 -0.02 0.81 16 38 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -61.34 338.66 2.94 -58.39 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.03 Total: 6.27 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 6.35 Total: -14.99 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -5.31 Total: -95.19 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.16 Total: 1.42 kcal Total: -61.34 2.94 -58.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412989094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.346 kcal (2) G-P(sol) polarization free energy of solvation -61.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds