Wall clock time and date at job start Tue Mar 31 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86809 * 119.99906 * 2 1 4 4 H 1.48502 * 109.47071 * 240.00065 * 3 2 1 5 5 H 1.48493 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46985 * 120.00370 * 3 2 1 7 7 C 1.38952 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 198.20485 * 7 2 1 9 9 N 1.37097 * 119.99582 * 18.20856 * 7 2 1 10 10 C 1.34773 * 120.00342 * 44.28503 * 9 7 2 11 11 O 1.21296 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00090 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47100 * 180.02562 * 12 10 9 14 14 C 1.38255 * 120.00063 * 89.99847 * 13 12 10 15 15 C 1.38208 * 119.99831 * 179.97438 * 14 13 12 16 16 C 1.38260 * 120.00315 * 0.25796 * 15 14 13 17 17 C 1.38214 * 119.99778 * 359.46512 * 16 15 14 18 18 C 1.50694 * 120.00025 * 180.29559 * 17 16 15 19 19 C 1.53002 * 117.50285 * 8.86349 * 18 17 16 20 20 C 1.52997 * 117.50375 * 300.23754 * 18 17 16 21 21 C 1.38223 * 119.99931 * 269.97784 * 13 12 10 22 22 C 1.46505 * 119.99901 * 224.28874 * 9 7 2 23 23 C 1.53000 * 117.49427 * 3.22595 * 22 9 7 24 24 C 1.52997 * 117.49648 * 294.60603 * 22 9 7 25 25 H 0.97000 * 120.00230 * 354.92118 * 1 2 3 26 26 H 1.08998 * 109.47167 * 60.00524 * 12 10 9 27 27 H 1.08996 * 109.47214 * 299.99987 * 12 10 9 28 28 H 1.07994 * 120.00159 * 359.97438 * 14 13 12 29 29 H 1.08001 * 120.00080 * 179.97438 * 15 14 13 30 30 H 1.08004 * 120.00198 * 179.72346 * 16 15 14 31 31 H 1.09004 * 115.55188 * 154.56279 * 18 17 16 32 32 H 1.09000 * 117.49172 * 359.97438 * 19 18 17 33 33 H 1.09000 * 117.50582 * 145.01324 * 19 18 17 34 34 H 1.09000 * 117.50212 * 214.97788 * 20 18 17 35 35 H 1.08999 * 117.49383 * 359.97438 * 20 18 17 36 36 H 1.07999 * 119.99650 * 359.97438 * 21 13 12 37 37 H 1.08997 * 115.55208 * 148.93111 * 22 9 7 38 38 H 1.08996 * 117.50328 * 359.97438 * 23 22 9 39 39 H 1.09001 * 117.49867 * 145.02280 * 23 22 9 40 40 H 1.09000 * 117.49466 * 214.97954 * 24 22 9 41 41 H 1.08997 * 117.50192 * 359.96621 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0484 -1.2268 0.2917 9 7 1.3749 -2.3607 -0.3721 10 6 0.5783 -2.3737 -1.4591 11 8 0.4226 -1.3614 -2.1090 12 6 -0.1191 -3.6458 -1.8671 13 6 -0.9412 -3.3934 -3.1047 14 6 -0.3803 -3.5725 -4.3556 15 6 -1.1345 -3.3415 -5.4905 16 6 -2.4481 -2.9260 -5.3750 17 6 -3.0105 -2.7524 -4.1244 18 6 -4.4443 -2.3061 -3.9984 19 6 -5.2853 -2.2615 -5.2758 20 6 -4.8222 -0.9596 -4.6190 21 6 -2.2560 -2.9831 -2.9891 22 6 1.5633 -3.5835 0.4126 23 6 2.4184 -3.4862 1.6776 24 6 2.9643 -4.1977 0.4380 25 1 -0.4850 0.8367 0.0744 26 1 -0.7709 -3.9781 -1.0591 27 1 0.6232 -4.4163 -2.0754 28 1 0.6470 -3.8930 -4.4459 29 1 -0.6963 -3.4810 -6.4677 30 1 -3.0360 -2.7412 -6.2619 31 1 -4.9467 -2.5932 -3.0746 32 1 -4.8012 -2.5548 -6.2074 33 1 -6.3410 -2.5196 -5.1927 34 1 -5.5734 -0.3610 -4.1037 35 1 -4.0336 -0.3964 -5.1180 36 1 -2.6943 -2.8439 -2.0119 37 1 0.7139 -4.2663 0.4302 38 1 2.8412 -2.5127 1.9258 39 1 2.1317 -4.1052 2.5278 40 1 3.0366 -5.2848 0.4725 41 1 3.7457 -3.6925 -0.1296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413245518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:15 Heat of formation + Delta-G solvation = 52.244191 kcal Electronic energy + Delta-G solvation = -22221.147297 eV Core-core repulsion = 19068.024345 eV Total energy + Delta-G solvation = -3153.122952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.50878 -38.40147 -36.70874 -35.84079 -32.88821 -31.86814 -30.77033 -30.37676 -27.27676 -24.61005 -23.43306 -22.43376 -21.76847 -21.63287 -21.12333 -19.88605 -18.70075 -16.64921 -16.30803 -15.98986 -15.61411 -14.82211 -14.72997 -14.25340 -14.19859 -13.85257 -13.59887 -13.13202 -12.82652 -12.63138 -12.27103 -11.93199 -11.74156 -11.47165 -11.37706 -11.06276 -10.90424 -10.81282 -10.77403 -10.62297 -10.48979 -10.33109 -10.20328 -10.14398 -9.93601 -9.71528 -8.68516 -8.32213 -8.12619 -7.85110 -6.97227 -6.06804 -3.82052 1.76439 1.86898 3.32293 3.39664 3.43104 3.83867 4.17320 4.25866 4.36641 4.72283 4.80800 4.92874 4.97404 5.11501 5.18278 5.31779 5.33894 5.44071 5.49340 5.60738 5.68283 5.74807 5.78779 5.81678 5.90679 5.92403 6.09797 6.14412 6.15162 6.18220 6.23427 6.24534 6.42404 6.53140 6.55741 6.77316 6.88428 6.95171 6.98821 7.16602 7.46115 7.65449 8.31972 9.11409 9.22216 9.71542 10.36105 11.02277 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.005141 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.060229 B = 5444.999829 C = 6406.391315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.075 0.925 9 N -0.431 5.431 10 C 0.487 3.513 11 O -0.523 6.523 12 C -0.102 4.102 13 C -0.036 4.036 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.056 4.056 18 C -0.110 4.110 19 C -0.181 4.181 20 C -0.169 4.169 21 C -0.094 4.094 22 C 0.076 3.924 23 C -0.174 4.174 24 C -0.209 4.209 25 H 0.264 0.736 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 -8.747 -5.619 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.476 4.476 8 H 0.093 0.907 9 N -0.152 5.152 10 C 0.274 3.726 11 O -0.399 6.399 12 C -0.142 4.142 13 C -0.037 4.037 14 C -0.130 4.130 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.056 4.056 18 C -0.129 4.129 19 C -0.217 4.217 20 C -0.206 4.206 21 C -0.112 4.112 22 C -0.031 4.031 23 C -0.212 4.212 24 C -0.248 4.248 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.863 -8.059 -6.035 11.651 hybrid contribution 0.431 0.827 0.258 0.967 sum -5.433 -7.232 -5.777 10.733 Atomic orbital electron populations 1.69803 1.06494 1.27400 1.42861 1.25213 0.94794 0.99254 0.94303 0.86302 0.79316 0.82134 0.78408 1.20011 1.21241 1.20430 1.18765 0.94369 0.83916 1.50556 0.90723 1.42766 1.44442 1.06715 1.21320 1.19620 0.82916 0.88542 0.81474 1.90554 1.62005 1.34360 1.53030 1.20750 0.98789 0.99128 0.95561 1.19425 0.93441 0.96653 0.94165 1.20930 0.99199 1.00868 0.92043 1.20941 0.94255 1.00562 0.98041 1.20833 0.95508 1.02231 0.96536 1.18982 0.93480 0.99817 0.93299 1.20992 0.93010 1.01292 0.97559 1.23040 0.99679 1.02141 0.96868 1.22998 1.03361 0.90506 1.03775 1.20753 0.93773 0.98789 0.97866 1.21696 0.92453 0.91657 0.97278 1.23050 1.04596 1.02448 0.91072 1.23312 0.99894 0.98428 1.03141 0.92637 0.89919 0.89863 0.86581 0.86660 0.86767 0.87209 0.88544 0.88806 0.88668 0.88563 0.86390 0.88073 0.87533 0.89868 0.89851 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.85 11.74 55.50 0.65 -24.20 16 2 C 0.08 2.13 4.39 -17.47 -0.08 2.05 16 3 Si 0.91 22.28 29.59 -169.99 -5.03 17.25 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.59 7.92 -14.93 -0.12 -9.71 16 8 H 0.08 1.99 7.26 -52.49 -0.38 1.61 16 9 N -0.43 -10.78 2.83 -107.73 -0.31 -11.09 16 10 C 0.49 12.36 6.96 -10.99 -0.08 12.29 16 11 O -0.52 -15.54 13.80 5.54 0.08 -15.47 16 12 C -0.10 -1.99 4.45 -29.03 -0.13 -2.11 16 13 C -0.04 -0.70 4.37 -104.62 -0.46 -1.16 16 14 C -0.11 -1.97 9.70 -39.59 -0.38 -2.36 16 15 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 16 C -0.13 -2.05 9.29 -39.58 -0.37 -2.42 16 17 C -0.06 -0.92 5.61 -104.63 -0.59 -1.51 16 18 C -0.11 -1.53 6.04 -91.77 -0.55 -2.08 16 19 C -0.18 -2.01 9.86 -26.73 -0.26 -2.27 16 20 C -0.17 -2.16 10.16 -26.73 -0.27 -2.43 16 21 C -0.09 -1.75 9.39 -39.58 -0.37 -2.12 16 22 C 0.08 1.50 5.87 -67.93 -0.40 1.10 16 23 C -0.17 -3.13 9.80 -26.73 -0.26 -3.40 16 24 C -0.21 -3.54 10.36 -26.73 -0.28 -3.82 16 25 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 26 H 0.08 1.49 7.51 -51.93 -0.39 1.10 16 27 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 28 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.47 6.03 -52.48 -0.32 1.15 16 31 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.10 1.02 6.18 -51.93 -0.32 0.70 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.10 1.78 6.96 -51.93 -0.36 1.42 16 38 H 0.11 2.14 6.72 -51.93 -0.35 1.79 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -33.16 341.70 -10.35 -43.52 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.90 Total: 7.04 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -4.99 Total: -22.21 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.35 Total: -35.28 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.16 -10.35 -43.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413245518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.761 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds