Wall clock time and date at job start Tue Mar 31 2020 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86809 * 119.99906 * 2 1 4 4 H 1.48502 * 109.47071 * 240.00065 * 3 2 1 5 5 H 1.48493 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46985 * 120.00370 * 3 2 1 7 7 C 1.38952 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 198.20485 * 7 2 1 9 9 N 1.37097 * 119.99582 * 18.20856 * 7 2 1 10 10 C 1.34773 * 120.00342 * 44.28503 * 9 7 2 11 11 O 1.21296 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00090 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47100 * 180.02562 * 12 10 9 14 14 C 1.38255 * 120.00063 * 89.99847 * 13 12 10 15 15 C 1.38208 * 119.99831 * 179.97438 * 14 13 12 16 16 C 1.38260 * 120.00315 * 0.25796 * 15 14 13 17 17 C 1.38214 * 119.99778 * 359.46512 * 16 15 14 18 18 C 1.50694 * 120.00025 * 180.29559 * 17 16 15 19 19 C 1.53002 * 117.50285 * 8.86349 * 18 17 16 20 20 C 1.52997 * 117.50375 * 300.23754 * 18 17 16 21 21 C 1.38223 * 119.99931 * 269.97784 * 13 12 10 22 22 C 1.46505 * 119.99901 * 224.28874 * 9 7 2 23 23 C 1.53000 * 117.49427 * 3.22595 * 22 9 7 24 24 C 1.52997 * 117.49648 * 294.60603 * 22 9 7 25 25 H 0.97000 * 120.00230 * 354.92118 * 1 2 3 26 26 H 1.08998 * 109.47167 * 60.00524 * 12 10 9 27 27 H 1.08996 * 109.47214 * 299.99987 * 12 10 9 28 28 H 1.07994 * 120.00159 * 359.97438 * 14 13 12 29 29 H 1.08001 * 120.00080 * 179.97438 * 15 14 13 30 30 H 1.08004 * 120.00198 * 179.72346 * 16 15 14 31 31 H 1.09004 * 115.55188 * 154.56279 * 18 17 16 32 32 H 1.09000 * 117.49172 * 359.97438 * 19 18 17 33 33 H 1.09000 * 117.50582 * 145.01324 * 19 18 17 34 34 H 1.09000 * 117.50212 * 214.97788 * 20 18 17 35 35 H 1.08999 * 117.49383 * 359.97438 * 20 18 17 36 36 H 1.07999 * 119.99650 * 359.97438 * 21 13 12 37 37 H 1.08997 * 115.55208 * 148.93111 * 22 9 7 38 38 H 1.08996 * 117.50328 * 359.97438 * 23 22 9 39 39 H 1.09001 * 117.49867 * 145.02280 * 23 22 9 40 40 H 1.09000 * 117.49466 * 214.97954 * 24 22 9 41 41 H 1.08997 * 117.50192 * 359.96621 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0484 -1.2268 0.2917 9 7 1.3749 -2.3607 -0.3721 10 6 0.5783 -2.3737 -1.4591 11 8 0.4226 -1.3614 -2.1090 12 6 -0.1191 -3.6458 -1.8671 13 6 -0.9412 -3.3934 -3.1047 14 6 -0.3803 -3.5725 -4.3556 15 6 -1.1345 -3.3415 -5.4905 16 6 -2.4481 -2.9260 -5.3750 17 6 -3.0105 -2.7524 -4.1244 18 6 -4.4443 -2.3061 -3.9984 19 6 -5.2853 -2.2615 -5.2758 20 6 -4.8222 -0.9596 -4.6190 21 6 -2.2560 -2.9831 -2.9891 22 6 1.5633 -3.5835 0.4126 23 6 2.4184 -3.4862 1.6776 24 6 2.9643 -4.1977 0.4380 25 1 -0.4850 0.8367 0.0744 26 1 -0.7709 -3.9781 -1.0591 27 1 0.6232 -4.4163 -2.0754 28 1 0.6470 -3.8930 -4.4459 29 1 -0.6963 -3.4810 -6.4677 30 1 -3.0360 -2.7412 -6.2619 31 1 -4.9467 -2.5932 -3.0746 32 1 -4.8012 -2.5548 -6.2074 33 1 -6.3410 -2.5196 -5.1927 34 1 -5.5734 -0.3610 -4.1037 35 1 -4.0336 -0.3964 -5.1180 36 1 -2.6943 -2.8439 -2.0119 37 1 0.7139 -4.2663 0.4302 38 1 2.8412 -2.5127 1.9258 39 1 2.1317 -4.1052 2.5278 40 1 3.0366 -5.2848 0.4725 41 1 3.7457 -3.6925 -0.1296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413245518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:14 Heat of formation + Delta-G solvation = 34.975376 kcal Electronic energy + Delta-G solvation = -22221.896129 eV Core-core repulsion = 19068.024345 eV Total energy + Delta-G solvation = -3153.871784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89999 -40.03513 -37.98785 -37.38858 -34.82143 -33.43105 -32.63785 -31.63371 -28.87587 -26.50256 -24.63126 -23.52106 -23.14799 -22.92635 -22.70359 -21.46364 -20.21124 -18.26808 -17.84960 -17.68489 -16.85568 -16.69116 -16.19818 -15.86671 -15.59371 -15.27448 -14.97061 -14.71153 -14.49613 -14.06021 -13.69410 -13.49913 -13.12569 -13.06974 -12.87522 -12.78094 -12.48932 -12.40169 -12.19322 -12.12333 -11.97059 -11.78027 -11.63980 -11.51090 -11.23852 -11.19349 -10.71254 -9.99491 -9.56712 -9.31459 -8.93468 -8.18738 -5.96476 0.47530 0.54874 1.33724 1.42614 1.45615 2.26136 2.44180 2.69086 3.08052 3.13697 3.27933 3.39558 3.65068 3.87968 4.00230 4.05375 4.14144 4.17363 4.20897 4.22492 4.27536 4.33204 4.47551 4.55561 4.60671 4.69494 4.78015 4.82045 4.90934 4.97291 5.04917 5.12527 5.19821 5.24010 5.25150 5.32397 5.47134 5.50822 5.60599 5.71978 5.80743 6.17406 6.22670 7.06097 7.24730 7.73438 8.41218 8.89508 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.005141 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.060229 B = 5444.999829 C = 6406.391315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.023 3.977 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.356 4.356 8 H 0.075 0.925 9 N -0.447 5.447 10 C 0.474 3.526 11 O -0.579 6.579 12 C -0.086 4.086 13 C -0.060 4.060 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.135 4.135 17 C -0.060 4.060 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.178 4.178 21 C -0.122 4.122 22 C 0.043 3.957 23 C -0.172 4.172 24 C -0.179 4.179 25 H 0.257 0.743 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -10.415 -6.519 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.183 4.183 3 Si 0.791 3.209 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.093 0.907 9 N -0.168 5.168 10 C 0.263 3.737 11 O -0.460 6.460 12 C -0.126 4.126 13 C -0.061 4.061 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.152 4.152 17 C -0.060 4.060 18 C -0.155 4.155 19 C -0.187 4.187 20 C -0.215 4.215 21 C -0.140 4.140 22 C -0.062 4.062 23 C -0.209 4.209 24 C -0.218 4.218 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.928 -9.767 -6.893 13.343 hybrid contribution 0.494 1.280 0.524 1.469 sum -5.433 -8.487 -6.369 11.921 Atomic orbital electron populations 1.69928 1.07904 1.27412 1.45235 1.26006 0.95464 1.02417 0.94391 0.85439 0.78191 0.78499 0.78747 1.20909 1.21475 1.17947 1.19015 0.94604 0.85314 1.49404 0.90698 1.43008 1.44065 1.07735 1.21980 1.20560 0.82529 0.89743 0.80898 1.90501 1.63906 1.36776 1.54802 1.20609 0.99115 0.96636 0.96272 1.19539 0.93740 0.98124 0.94678 1.21154 0.99933 1.01550 0.92165 1.21350 0.94293 0.99088 0.98861 1.21216 0.95785 1.01155 0.97071 1.19301 0.94705 0.98818 0.93137 1.21060 0.92247 1.02724 0.99483 1.23158 1.00498 0.99489 0.95513 1.23050 1.03480 0.90737 1.04203 1.20837 0.94377 1.00559 0.98227 1.22028 0.95032 0.90575 0.98540 1.23101 1.03709 1.02070 0.92049 1.23319 0.96777 1.00492 1.01171 0.93395 0.88887 0.87209 0.85736 0.83464 0.83797 0.87089 0.87476 0.86414 0.87533 0.89900 0.87880 0.85708 0.90237 0.86504 0.85635 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.07 11.74 21.66 0.25 -53.82 16 2 C 0.02 1.37 4.39 84.93 0.37 1.74 16 3 Si 0.97 46.93 29.59 68.60 2.03 48.96 16 4 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.36 -19.98 7.92 84.04 0.67 -19.32 16 8 H 0.08 4.07 7.26 -2.91 -0.02 4.05 16 9 N -0.45 -22.69 2.83 -613.12 -1.74 -24.42 16 10 C 0.47 24.66 6.96 87.66 0.61 25.27 16 11 O -0.58 -35.88 13.80 -3.08 -0.04 -35.93 16 12 C -0.09 -3.39 4.45 29.10 0.13 -3.26 16 13 C -0.06 -2.36 4.37 -19.86 -0.09 -2.44 16 14 C -0.13 -4.52 9.70 22.27 0.22 -4.30 16 15 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 16 C -0.13 -3.92 9.29 22.27 0.21 -3.71 16 17 C -0.06 -1.96 5.61 -19.87 -0.11 -2.07 16 18 C -0.14 -3.70 6.04 -11.54 -0.07 -3.77 16 19 C -0.15 -2.93 9.86 30.60 0.30 -2.63 16 20 C -0.18 -4.33 10.16 30.59 0.31 -4.02 16 21 C -0.12 -4.70 9.39 22.27 0.21 -4.50 16 22 C 0.04 1.67 5.87 44.99 0.26 1.93 16 23 C -0.17 -5.88 9.80 30.59 0.30 -5.58 16 24 C -0.18 -5.61 10.36 30.59 0.32 -5.29 16 25 H 0.26 15.54 8.32 -92.71 -0.77 14.77 16 26 H 0.09 3.38 7.51 -2.39 -0.02 3.36 16 27 H 0.11 3.61 8.05 -2.39 -0.02 3.59 16 28 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.14 3.25 6.03 -2.91 -0.02 3.23 16 31 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.11 1.87 6.18 -2.39 -0.01 1.85 16 33 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.13 4.16 6.96 -2.39 -0.02 4.14 16 38 H 0.08 3.17 6.72 -2.39 -0.02 3.16 16 39 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -75.74 341.70 5.38 -70.35 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 1.02 Total: 30.10 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 3.86 Total: -35.25 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.48 Total: -78.24 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.04 Total: -35.93 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.74 5.38 -70.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413245518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.329 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds