Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99767 * 2 1 4 4 H 1.48509 * 109.46752 * 269.99669 * 3 2 1 5 5 H 1.48507 * 109.47342 * 29.99129 * 3 2 1 6 6 H 1.48495 * 109.47482 * 149.99881 * 3 2 1 7 7 C 1.37876 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00440 * 173.06638 * 7 2 1 9 9 C 1.50707 * 119.99591 * 353.06706 * 7 2 1 10 10 C 1.53001 * 115.54752 * 84.96257 * 9 7 2 11 11 N 1.46908 * 109.47114 * 65.16873 * 10 9 7 12 12 C 1.46903 * 110.99766 * 174.69811 * 11 10 9 13 13 C 1.50696 * 109.46579 * 179.97438 * 12 11 10 14 14 C 1.32966 * 119.90148 * 94.98214 * 13 12 11 15 15 C 1.47811 * 118.34391 * 181.48078 * 14 13 12 16 16 C 1.38992 * 121.58731 * 193.01985 * 15 14 13 17 17 C 1.38150 * 119.60340 * 179.62695 * 16 15 14 18 18 C 1.38417 * 120.28706 * 0.39798 * 17 16 15 19 19 C 1.38320 * 120.51249 * 0.55146 * 18 17 16 20 20 C 1.38262 * 119.83449 * 359.74154 * 19 18 17 21 21 O 1.35673 * 121.33228 * 177.92291 * 20 19 18 22 22 C 1.42738 * 117.40383 * 147.15738 * 21 20 19 23 23 C 1.53003 * 117.49591 * 230.63060 * 9 7 2 24 24 C 1.52998 * 117.49905 * 299.29251 * 9 7 2 25 25 H 0.96995 * 120.00335 * 5.05561 * 1 2 3 26 26 H 1.08993 * 109.47128 * 305.16808 * 10 9 7 27 27 H 1.09002 * 109.46632 * 185.16352 * 10 9 7 28 28 H 1.00896 * 110.99305 * 298.65562 * 11 10 9 29 29 H 1.09000 * 109.46641 * 60.00218 * 12 11 10 30 30 H 1.08999 * 109.47162 * 300.00277 * 12 11 10 31 31 H 1.08003 * 120.82821 * 1.46288 * 14 13 12 32 32 H 1.08003 * 120.19679 * 359.64925 * 16 15 14 33 33 H 1.07997 * 119.85226 * 180.38062 * 17 16 15 34 34 H 1.08002 * 119.74527 * 180.52300 * 18 17 16 35 35 H 1.07997 * 120.08432 * 179.77565 * 19 18 17 36 36 H 1.09002 * 109.22543 * 286.75285 * 22 21 20 37 37 H 1.08994 * 109.23092 * 167.34900 * 22 21 20 38 38 H 1.09000 * 117.49273 * 215.00315 * 23 9 7 39 39 H 1.08992 * 117.49939 * 0.02562 * 23 9 7 40 40 H 1.09000 * 117.49987 * 359.97438 * 24 9 7 41 41 H 1.09003 * 117.49650 * 144.97964 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0787 -1.1974 -0.1124 9 6 1.2594 -2.4943 0.1587 10 6 0.6848 -3.0864 -1.1298 11 7 1.7842 -3.4624 -2.0288 12 6 1.2757 -4.1497 -3.2234 13 6 2.4294 -4.5184 -4.1200 14 6 2.9698 -5.7307 -4.0402 15 6 4.1212 -6.0445 -4.9122 16 6 4.5694 -7.3488 -5.0851 17 6 5.6449 -7.5964 -5.9161 18 6 6.2789 -6.5524 -6.5671 19 6 5.8523 -5.2491 -6.3857 20 6 4.7810 -4.9857 -5.5523 21 8 4.3635 -3.7159 -5.3199 22 6 2.9674 -3.5127 -5.1033 23 6 1.7626 -3.4720 1.2225 24 6 0.4608 -2.6987 1.4476 25 1 -0.4850 0.8367 -0.0740 26 1 0.0522 -2.3461 -1.6193 27 1 0.0925 -3.9698 -0.8911 28 1 2.3354 -2.6563 -2.2824 29 1 0.5953 -3.4889 -3.7606 30 1 0.7443 -5.0531 -2.9243 31 1 2.5773 -6.4676 -3.3551 32 1 4.0795 -8.1639 -4.5731 33 1 5.9925 -8.6090 -6.0581 34 1 7.1136 -6.7568 -7.2213 35 1 6.3544 -4.4394 -6.8943 36 1 2.4382 -3.6182 -6.0504 37 1 2.8072 -2.5078 -4.7128 38 1 1.6842 -4.5371 1.0045 39 1 2.6323 -3.1746 1.8083 40 1 0.4748 -1.8928 2.1814 41 1 -0.4741 -3.2547 1.3776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430039734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = 26.674408 kcal Electronic energy + Delta-G solvation = -21614.356030 eV Core-core repulsion = 18460.124289 eV Total energy + Delta-G solvation = -3154.231741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66245 -37.64844 -37.01843 -35.50313 -33.13782 -31.90930 -30.59399 -30.44194 -26.64280 -25.96860 -25.29765 -23.37987 -22.67072 -21.74699 -20.91923 -19.16130 -18.32590 -17.94419 -16.61159 -16.09865 -15.88127 -15.00454 -14.79749 -14.65936 -14.57590 -14.02166 -13.94062 -13.63963 -13.49062 -12.81589 -12.78585 -12.62082 -12.18417 -11.86363 -11.50477 -11.40754 -11.31756 -11.08819 -10.95583 -10.83174 -10.44156 -10.30363 -10.13977 -10.06299 -9.43227 -8.74554 -8.70748 -8.42565 -8.11738 -7.82240 -7.52866 -6.02908 -4.08862 0.78917 1.28982 2.34406 3.27679 3.35029 3.35795 3.40508 3.75836 4.39937 4.56623 4.60372 4.68226 4.88406 5.00446 5.18729 5.18921 5.26011 5.29412 5.37419 5.42300 5.61189 5.68180 5.75919 5.84437 5.93372 6.09577 6.17085 6.21380 6.36629 6.47301 6.50453 6.56712 6.63592 6.81186 6.83395 6.85500 6.91613 7.17832 7.36731 7.51985 7.55438 7.88217 7.93560 8.21367 8.50511 8.94722 9.56982 11.04896 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.003745 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.811347 B = 7474.813842 C = 8152.057941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.105 3.895 11 N -0.674 5.674 12 C 0.098 3.902 13 C -0.145 4.145 14 C -0.094 4.094 15 C -0.120 4.120 16 C -0.077 4.077 17 C -0.152 4.152 18 C -0.091 4.091 19 C -0.147 4.147 20 C 0.128 3.872 21 O -0.309 6.309 22 C 0.103 3.897 23 C -0.200 4.200 24 C -0.162 4.162 25 H 0.259 0.741 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.348 0.652 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -12.326 -12.969 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.050 3.950 10 C -0.023 4.023 11 N -0.306 5.306 12 C -0.031 4.031 13 C -0.146 4.146 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.095 4.095 17 C -0.170 4.170 18 C -0.109 4.109 19 C -0.165 4.165 20 C 0.083 3.917 21 O -0.223 6.223 22 C 0.028 3.972 23 C -0.237 4.237 24 C -0.200 4.200 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.167 0.833 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.233 -12.570 -12.545 18.821 hybrid contribution -0.233 1.567 -0.310 1.614 sum 5.999 -11.003 -12.855 17.953 Atomic orbital electron populations 1.69989 1.05861 1.26593 1.49312 1.24997 0.94766 0.98808 0.94676 0.86682 0.80096 0.83678 0.78122 1.20738 1.21274 1.19775 1.20478 0.93151 0.88838 1.50663 0.92191 1.18712 0.97361 0.93361 0.85551 1.21471 0.90860 0.95998 0.93975 1.60537 1.24011 1.32519 1.13555 1.20800 0.92499 0.99406 0.90389 1.22672 0.99066 0.94570 0.98290 1.21455 0.94571 0.96996 0.98332 1.19245 0.99133 0.93651 1.00041 1.20998 0.95953 0.95182 0.97342 1.21039 0.97356 0.99202 0.99408 1.21008 0.99187 0.91749 0.98981 1.20520 0.98836 0.97505 0.99678 1.19070 0.95162 0.83653 0.93848 1.85985 1.25654 1.24310 1.86369 1.21710 0.78521 0.99560 0.97360 1.22869 0.97610 0.95823 1.07432 1.22538 0.92451 1.01338 1.03680 0.93130 0.94517 0.94382 0.83282 0.95001 0.90779 0.85042 0.85492 0.85860 0.85549 0.85161 0.91505 0.86545 0.91723 0.90904 0.90326 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.48 12.95 55.43 0.72 -23.77 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.49 -13.17 8.32 -34.44 -0.29 -13.46 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.24 1.56 -155.66 -0.24 1.00 16 10 C 0.11 2.31 5.54 -3.82 -0.02 2.29 16 11 N -0.67 -13.04 6.46 -115.05 -0.74 -13.78 16 12 C 0.10 1.53 5.82 -4.98 -0.03 1.50 16 13 C -0.15 -2.09 5.54 -101.23 -0.56 -2.65 16 14 C -0.09 -1.31 9.65 -37.49 -0.36 -1.68 16 15 C -0.12 -1.63 5.81 -104.96 -0.61 -2.24 16 16 C -0.08 -0.86 9.85 -39.33 -0.39 -1.24 16 17 C -0.15 -1.48 10.03 -39.55 -0.40 -1.88 16 18 C -0.09 -0.89 10.03 -39.49 -0.40 -1.29 16 19 C -0.15 -1.73 10.01 -39.54 -0.40 -2.12 16 20 C 0.13 1.80 6.47 -38.83 -0.25 1.55 16 21 O -0.31 -4.70 10.40 -18.72 -0.19 -4.89 16 22 C 0.10 1.40 6.96 35.95 0.25 1.65 16 23 C -0.20 -4.51 9.96 -26.69 -0.27 -4.78 16 24 C -0.16 -3.85 9.46 -26.69 -0.25 -4.10 16 25 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.35 7.12 8.29 -39.29 -0.33 6.79 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 31 H 0.13 1.68 8.04 -52.48 -0.42 1.26 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.54 8.11 -51.93 -0.42 1.12 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -28.94 346.97 -10.52 -39.46 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.20 Total: 7.53 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -4.30 Total: -25.65 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.03 Total: -37.55 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.19 Total: -4.89 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.94 -10.52 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430039734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.137 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds