Wall clock time and date at job start Tue Mar 31 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99767 * 2 1 4 4 H 1.48509 * 109.46752 * 269.99669 * 3 2 1 5 5 H 1.48507 * 109.47342 * 29.99129 * 3 2 1 6 6 H 1.48495 * 109.47482 * 149.99881 * 3 2 1 7 7 C 1.37876 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00440 * 173.06638 * 7 2 1 9 9 C 1.50707 * 119.99591 * 353.06706 * 7 2 1 10 10 C 1.53001 * 115.54752 * 84.96257 * 9 7 2 11 11 N 1.46908 * 109.47114 * 65.16873 * 10 9 7 12 12 C 1.46903 * 110.99766 * 174.69811 * 11 10 9 13 13 C 1.50696 * 109.46579 * 179.97438 * 12 11 10 14 14 C 1.32966 * 119.90148 * 94.98214 * 13 12 11 15 15 C 1.47811 * 118.34391 * 181.48078 * 14 13 12 16 16 C 1.38992 * 121.58731 * 193.01985 * 15 14 13 17 17 C 1.38150 * 119.60340 * 179.62695 * 16 15 14 18 18 C 1.38417 * 120.28706 * 0.39798 * 17 16 15 19 19 C 1.38320 * 120.51249 * 0.55146 * 18 17 16 20 20 C 1.38262 * 119.83449 * 359.74154 * 19 18 17 21 21 O 1.35673 * 121.33228 * 177.92291 * 20 19 18 22 22 C 1.42738 * 117.40383 * 147.15738 * 21 20 19 23 23 C 1.53003 * 117.49591 * 230.63060 * 9 7 2 24 24 C 1.52998 * 117.49905 * 299.29251 * 9 7 2 25 25 H 0.96995 * 120.00335 * 5.05561 * 1 2 3 26 26 H 1.08993 * 109.47128 * 305.16808 * 10 9 7 27 27 H 1.09002 * 109.46632 * 185.16352 * 10 9 7 28 28 H 1.00896 * 110.99305 * 298.65562 * 11 10 9 29 29 H 1.09000 * 109.46641 * 60.00218 * 12 11 10 30 30 H 1.08999 * 109.47162 * 300.00277 * 12 11 10 31 31 H 1.08003 * 120.82821 * 1.46288 * 14 13 12 32 32 H 1.08003 * 120.19679 * 359.64925 * 16 15 14 33 33 H 1.07997 * 119.85226 * 180.38062 * 17 16 15 34 34 H 1.08002 * 119.74527 * 180.52300 * 18 17 16 35 35 H 1.07997 * 120.08432 * 179.77565 * 19 18 17 36 36 H 1.09002 * 109.22543 * 286.75285 * 22 21 20 37 37 H 1.08994 * 109.23092 * 167.34900 * 22 21 20 38 38 H 1.09000 * 117.49273 * 215.00315 * 23 9 7 39 39 H 1.08992 * 117.49939 * 0.02562 * 23 9 7 40 40 H 1.09000 * 117.49987 * 359.97438 * 24 9 7 41 41 H 1.09003 * 117.49650 * 144.97964 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0787 -1.1974 -0.1124 9 6 1.2594 -2.4943 0.1587 10 6 0.6848 -3.0864 -1.1298 11 7 1.7842 -3.4624 -2.0288 12 6 1.2757 -4.1497 -3.2234 13 6 2.4294 -4.5184 -4.1200 14 6 2.9698 -5.7307 -4.0402 15 6 4.1212 -6.0445 -4.9122 16 6 4.5694 -7.3488 -5.0851 17 6 5.6449 -7.5964 -5.9161 18 6 6.2789 -6.5524 -6.5671 19 6 5.8523 -5.2491 -6.3857 20 6 4.7810 -4.9857 -5.5523 21 8 4.3635 -3.7159 -5.3199 22 6 2.9674 -3.5127 -5.1033 23 6 1.7626 -3.4720 1.2225 24 6 0.4608 -2.6987 1.4476 25 1 -0.4850 0.8367 -0.0740 26 1 0.0522 -2.3461 -1.6193 27 1 0.0925 -3.9698 -0.8911 28 1 2.3354 -2.6563 -2.2824 29 1 0.5953 -3.4889 -3.7606 30 1 0.7443 -5.0531 -2.9243 31 1 2.5773 -6.4676 -3.3551 32 1 4.0795 -8.1639 -4.5731 33 1 5.9925 -8.6090 -6.0581 34 1 7.1136 -6.7568 -7.2213 35 1 6.3544 -4.4394 -6.8943 36 1 2.4382 -3.6182 -6.0504 37 1 2.8072 -2.5078 -4.7128 38 1 1.6842 -4.5371 1.0045 39 1 2.6323 -3.1746 1.8083 40 1 0.4748 -1.8928 2.1814 41 1 -0.4741 -3.2547 1.3776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430039734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:54 Heat of formation + Delta-G solvation = 11.209631 kcal Electronic energy + Delta-G solvation = -21615.026633 eV Core-core repulsion = 18460.124289 eV Total energy + Delta-G solvation = -3154.902344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62975 -38.90568 -38.40630 -36.86476 -34.42323 -33.94213 -31.62826 -31.31202 -28.16086 -27.25727 -26.92367 -24.77554 -23.59649 -22.93023 -22.66109 -21.02173 -19.35646 -18.93934 -17.95871 -17.54710 -17.06915 -16.62744 -16.28686 -15.87956 -15.73264 -15.50258 -15.31555 -14.83418 -14.57439 -14.39852 -13.92274 -13.68161 -13.45236 -13.24906 -13.03898 -12.89507 -12.83445 -12.76577 -12.31600 -12.31337 -12.13393 -12.00082 -11.40106 -11.26857 -11.01187 -10.71804 -10.40624 -9.95966 -9.58310 -9.15169 -8.81544 -8.08912 -6.19705 -0.14681 0.42879 1.35956 1.39346 1.42875 1.51738 2.37925 2.42581 2.88286 3.18962 3.32110 3.56662 3.63085 3.80347 3.86995 4.13396 4.17883 4.29368 4.35110 4.39282 4.48062 4.50626 4.52174 4.62216 4.68542 4.76575 4.83339 4.98602 5.00401 5.03443 5.07126 5.19032 5.28792 5.36494 5.49645 5.58399 5.66609 5.68197 5.70863 5.80016 5.90386 6.32286 6.39603 6.48407 6.57787 6.88506 7.48315 8.98241 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.003745 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.811347 B = 7474.813842 C = 8152.057941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.048 0.952 9 C 0.027 3.973 10 C 0.120 3.880 11 N -0.676 5.676 12 C 0.104 3.896 13 C -0.163 4.163 14 C -0.088 4.088 15 C -0.147 4.147 16 C -0.079 4.079 17 C -0.148 4.148 18 C -0.084 4.084 19 C -0.159 4.159 20 C 0.097 3.903 21 O -0.330 6.330 22 C 0.102 3.898 23 C -0.180 4.180 24 C -0.166 4.166 25 H 0.259 0.741 26 H 0.008 0.992 27 H 0.050 0.950 28 H 0.339 0.661 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.478 -14.230 -14.052 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.009 4.009 11 N -0.307 5.307 12 C -0.025 4.025 13 C -0.164 4.164 14 C -0.107 4.107 15 C -0.148 4.148 16 C -0.097 4.097 17 C -0.166 4.166 18 C -0.101 4.101 19 C -0.177 4.177 20 C 0.052 3.948 21 O -0.245 6.245 22 C 0.028 3.972 23 C -0.218 4.218 24 C -0.204 4.204 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.543 -14.490 -13.634 21.278 hybrid contribution -0.541 2.033 -0.022 2.103 sum 7.001 -12.458 -13.656 19.766 Atomic orbital electron populations 1.70082 1.06919 1.27158 1.50225 1.25598 0.95462 1.01532 0.94536 0.85782 0.78793 0.80205 0.78235 1.20065 1.21184 1.19783 1.20664 0.92790 0.90323 1.50456 0.93350 1.18881 0.98108 0.93483 0.86891 1.21192 0.91030 0.95448 0.93198 1.60517 1.23136 1.31808 1.15198 1.20784 0.93156 0.99252 0.89259 1.22558 0.99434 0.95291 0.99086 1.21688 0.94235 0.96862 0.97915 1.19407 0.99610 0.94717 1.01044 1.21340 0.96297 0.94685 0.97367 1.21479 0.96301 1.00811 0.98033 1.21454 0.99441 0.90762 0.98482 1.20828 0.98401 0.98988 0.99489 1.19469 0.96544 0.83372 0.95396 1.85934 1.26227 1.25464 1.86866 1.21719 0.78401 0.99136 0.97954 1.22838 0.96600 0.96547 1.05783 1.22462 0.93695 1.01264 1.02991 0.93207 0.97362 0.93123 0.84363 0.94777 0.89740 0.84108 0.83517 0.82593 0.82248 0.84275 0.90072 0.87101 0.89611 0.91294 0.92596 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.10 12.95 21.45 0.28 -50.82 16 2 C 0.03 1.58 5.39 84.65 0.46 2.03 16 3 Si 0.94 43.36 29.55 68.60 2.03 45.39 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.50 -27.30 8.32 25.60 0.21 -27.08 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 9 C 0.03 1.32 1.56 -52.92 -0.08 1.24 16 10 C 0.12 5.29 5.54 86.30 0.48 5.77 16 11 N -0.68 -26.20 6.46 -517.92 -3.35 -29.54 16 12 C 0.10 3.22 5.82 85.56 0.50 3.71 16 13 C -0.16 -4.68 5.54 -17.65 -0.10 -4.78 16 14 C -0.09 -2.38 9.65 23.63 0.23 -2.15 16 15 C -0.15 -3.83 5.81 -20.08 -0.12 -3.94 16 16 C -0.08 -1.57 9.85 22.43 0.22 -1.34 16 17 C -0.15 -2.36 10.03 22.29 0.22 -2.14 16 18 C -0.08 -1.37 10.03 22.33 0.22 -1.15 16 19 C -0.16 -3.50 10.01 22.30 0.22 -3.28 16 20 C 0.10 2.69 6.47 22.76 0.15 2.84 16 21 O -0.33 -10.21 10.40 -89.90 -0.94 -11.14 16 22 C 0.10 2.84 6.96 71.20 0.50 3.33 16 23 C -0.18 -7.98 9.96 30.62 0.30 -7.68 16 24 C -0.17 -7.89 9.46 30.62 0.29 -7.60 16 25 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 28 H 0.34 14.17 8.29 -89.70 -0.74 13.43 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.41 8.02 -2.39 -0.02 2.39 16 31 H 0.14 3.40 8.04 -2.91 -0.02 3.38 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 3.07 8.11 -2.39 -0.02 3.05 16 38 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -62.17 346.97 2.00 -60.17 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.27 Total: 28.17 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 3.71 Total: -42.21 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.07 Total: -80.36 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.94 Total: -11.14 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.17 2.00 -60.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430039734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.375 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds