Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48498 * 109.46958 * 270.00422 * 3 2 1 5 5 H 1.48498 * 109.46957 * 29.99891 * 3 2 1 6 6 H 1.48501 * 109.47382 * 150.00147 * 3 2 1 7 7 C 1.37883 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47081 * 175.65894 * 9 7 2 11 11 C 1.46901 * 110.99804 * 75.55011 * 10 9 7 12 12 C 1.50695 * 109.46838 * 190.00199 * 11 10 9 13 13 C 1.37864 * 120.02144 * 259.97688 * 12 11 10 14 14 C 1.38716 * 120.69457 * 180.08936 * 13 12 11 15 15 C 1.37768 * 120.27215 * 359.90206 * 14 13 12 16 16 C 1.39382 * 119.60055 * 0.06669 * 15 14 13 17 17 C 1.46786 * 134.34084 * 179.97438 * 16 15 14 18 18 C 1.33997 * 106.18015 * 180.02562 * 17 16 15 19 19 O 1.34445 * 110.16312 * 359.97438 * 18 17 16 20 20 C 1.34839 * 110.89648 * 0.02562 * 19 18 17 21 21 C 1.46896 * 111.00164 * 199.50533 * 10 9 7 22 22 C 1.52996 * 109.47521 * 71.64485 * 21 10 9 23 23 C 1.53002 * 117.50374 * 244.15285 * 22 21 10 24 24 C 1.52999 * 117.50306 * 175.48631 * 22 21 10 25 25 H 0.97005 * 119.99750 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47399 * 55.66357 * 9 7 2 27 27 H 1.08999 * 109.47793 * 295.65781 * 9 7 2 28 28 H 1.09000 * 109.47101 * 70.00138 * 11 10 9 29 29 H 1.08995 * 109.46876 * 310.00321 * 11 10 9 30 30 H 1.08001 * 119.65452 * 0.02562 * 13 12 11 31 31 H 1.07995 * 119.86483 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.19424 * 180.33862 * 15 14 13 33 33 H 1.07995 * 126.91449 * 359.97438 * 17 16 15 34 34 H 1.08002 * 124.92103 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47235 * 191.64748 * 21 10 9 36 36 H 1.09007 * 109.47261 * 311.64426 * 21 10 9 37 37 H 1.09001 * 115.54515 * 29.81921 * 22 21 10 38 38 H 1.09002 * 117.49773 * 359.97438 * 23 22 21 39 39 H 1.08993 * 117.50009 * 145.01626 * 23 22 21 40 40 H 1.08992 * 117.50123 * 214.98141 * 24 22 21 41 41 H 1.08994 * 117.49727 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2021 -3.6138 -0.1060 11 6 2.8903 -3.8412 1.1718 12 6 4.0217 -4.8152 0.9664 13 6 3.8604 -6.1414 1.3067 14 6 4.8931 -7.0496 1.1254 15 6 6.0972 -6.6361 0.5989 16 6 6.2729 -5.2981 0.2501 17 6 7.3824 -4.5233 -0.3184 18 6 6.9411 -3.2627 -0.4256 19 8 5.6744 -3.1759 0.0164 20 6 5.2276 -4.3775 0.4345 21 6 1.5312 -4.8364 -0.5675 22 6 1.1656 -4.6905 -2.0460 23 6 -0.3205 -4.6910 -2.4097 24 6 0.5503 -5.9046 -2.7448 25 1 -0.4850 0.8401 0.0004 26 1 0.5669 -2.5238 -0.8489 27 1 0.6843 -2.5916 0.9259 28 1 2.1858 -4.2500 1.8961 29 1 3.2870 -2.8967 1.5439 30 1 2.9205 -6.4766 1.7198 31 1 4.7523 -8.0854 1.3970 32 1 6.8985 -7.3454 0.4531 33 1 8.3585 -4.8944 -0.5940 34 1 7.5190 -2.4361 -0.8120 35 1 2.2000 -5.6877 -0.4409 36 1 0.6250 -4.9963 0.0168 37 1 1.8273 -4.0536 -2.6332 38 1 -1.0378 -4.7957 -1.5957 39 1 -0.6365 -4.0548 -3.2364 40 1 0.8067 -6.0662 -3.7917 41 1 0.4055 -6.8071 -2.1511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449023051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = 58.850979 kcal Electronic energy + Delta-G solvation = -22454.976460 eV Core-core repulsion = 19302.139999 eV Total energy + Delta-G solvation = -3152.836461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11140 -38.32221 -37.25057 -35.39573 -32.88159 -32.14480 -30.50522 -29.13251 -27.55315 -26.43564 -23.91306 -22.51530 -22.06479 -21.91542 -21.16783 -20.14663 -19.45205 -17.12667 -16.80445 -16.29752 -15.73511 -15.47428 -15.27317 -14.64082 -14.35817 -14.03852 -13.80560 -13.50967 -13.06638 -12.77218 -12.43496 -12.23832 -11.96314 -11.88261 -11.85550 -11.25176 -11.19815 -11.08782 -10.81195 -10.69241 -10.59355 -10.34939 -10.02326 -9.79775 -9.75939 -9.32034 -9.11390 -8.36674 -8.30253 -7.90115 -7.21283 -5.95769 -3.95734 1.13184 1.62416 2.59468 3.16820 3.35794 3.41473 3.45940 3.90611 4.27176 4.48803 4.65385 4.83696 4.91122 5.09884 5.25402 5.34559 5.38063 5.39172 5.40752 5.54323 5.59924 5.67064 5.80833 5.89463 5.94651 6.02115 6.05616 6.18262 6.28916 6.35836 6.38958 6.50909 6.51819 6.59296 6.62254 6.72757 6.85879 6.89235 7.31262 7.40452 7.49807 7.90055 8.17723 8.24999 8.61225 9.12878 9.67742 11.14856 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.006524 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.693085 B = 4291.061429 C = 5859.655616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.525 5.525 11 C 0.099 3.901 12 C -0.047 4.047 13 C -0.102 4.102 14 C -0.136 4.136 15 C -0.085 4.085 16 C -0.137 4.137 17 C -0.227 4.227 18 C 0.013 3.987 19 O -0.174 6.174 20 C 0.081 3.919 21 C 0.083 3.917 22 C -0.126 4.126 23 C -0.178 4.178 24 C -0.190 4.190 25 H 0.259 0.741 26 H 0.041 0.959 27 H -0.013 1.013 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.747 -13.142 -0.215 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.249 5.249 11 C -0.029 4.029 12 C -0.048 4.048 13 C -0.121 4.121 14 C -0.154 4.154 15 C -0.104 4.104 16 C -0.138 4.138 17 C -0.246 4.246 18 C -0.053 4.053 19 O -0.073 6.073 20 C 0.033 3.967 21 C -0.046 4.046 22 C -0.145 4.145 23 C -0.215 4.215 24 C -0.227 4.227 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.005 0.995 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.170 0.830 34 H 0.219 0.781 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.756 -12.622 -0.542 15.962 hybrid contribution -0.044 0.676 0.412 0.793 sum 9.712 -11.946 -0.130 15.396 Atomic orbital electron populations 1.69965 1.05983 1.26546 1.51560 1.24963 0.94806 0.99124 0.95714 0.86553 0.79794 0.83358 0.78045 1.20754 1.21451 1.19869 1.21206 0.93637 0.89873 1.49189 0.91785 1.19787 0.90081 0.87153 0.96136 1.62116 1.31622 1.04833 1.26368 1.20941 0.92438 0.97708 0.91813 1.19007 0.92134 0.94575 0.99101 1.20817 0.99185 0.91328 1.00777 1.20889 0.93258 0.99445 1.01816 1.20368 0.97554 0.93243 0.99215 1.19961 0.94304 0.94927 1.04561 1.22391 0.99960 0.93259 1.08985 1.23998 0.83351 0.98872 0.99033 1.84195 1.26762 1.31005 1.65366 1.19328 0.94909 0.82870 0.99627 1.21643 0.96396 0.93808 0.92722 1.22220 0.95631 0.99884 0.96762 1.22970 0.94454 1.00720 1.03369 1.22936 1.06204 0.92868 1.00720 0.93097 0.94070 0.99497 0.94947 0.88917 0.85404 0.85835 0.86163 0.83037 0.78076 0.91604 0.95861 0.87228 0.89247 0.89206 0.89435 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.50 -14.19 8.60 -34.44 -0.30 -14.49 16 8 H 0.06 1.84 7.66 -52.49 -0.40 1.43 16 9 C 0.19 5.03 4.59 -4.98 -0.02 5.01 16 10 N -0.53 -11.47 4.38 -237.52 -1.04 -12.51 16 11 C 0.10 1.96 4.93 -4.98 -0.02 1.93 16 12 C -0.05 -0.82 4.64 -104.52 -0.49 -1.30 16 13 C -0.10 -1.46 8.29 -39.54 -0.33 -1.79 16 14 C -0.14 -1.70 10.03 -39.58 -0.40 -2.10 16 15 C -0.09 -1.12 10.10 -39.33 -0.40 -1.52 16 16 C -0.14 -2.10 6.40 -105.16 -0.67 -2.77 16 17 C -0.23 -2.97 11.14 -37.62 -0.42 -3.39 16 18 C 0.01 0.19 11.96 29.24 0.35 0.54 16 19 O -0.17 -3.21 10.58 3.83 0.04 -3.17 16 20 C 0.08 1.45 7.11 -38.49 -0.27 1.17 16 21 C 0.08 1.55 5.10 -3.83 -0.02 1.53 16 22 C -0.13 -2.28 4.96 -90.62 -0.45 -2.73 16 23 C -0.18 -2.96 9.97 -26.69 -0.27 -3.23 16 24 C -0.19 -2.77 10.26 -26.69 -0.27 -3.04 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.04 1.15 6.94 -51.93 -0.36 0.79 16 27 H -0.01 -0.35 8.00 -51.93 -0.42 -0.77 16 28 H 0.03 0.60 7.97 -51.93 -0.41 0.19 16 29 H 0.09 2.04 7.31 -51.93 -0.38 1.66 16 30 H 0.13 1.59 8.02 -52.49 -0.42 1.17 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.07 1.13 5.88 -51.93 -0.31 0.83 16 36 H 0.02 0.44 7.79 -51.92 -0.40 0.03 16 37 H 0.11 2.18 8.14 -51.93 -0.42 1.76 16 38 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -31.69 343.36 -10.22 -41.91 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.04 Total: 2.50 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -4.07 Total: -24.71 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.30 Total: -38.69 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.69 -10.22 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449023051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.761 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds