Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48498 * 109.46958 * 270.00422 * 3 2 1 5 5 H 1.48498 * 109.46957 * 29.99891 * 3 2 1 6 6 H 1.48501 * 109.47382 * 150.00147 * 3 2 1 7 7 C 1.37883 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47081 * 175.65894 * 9 7 2 11 11 C 1.46901 * 110.99804 * 75.55011 * 10 9 7 12 12 C 1.50695 * 109.46838 * 190.00199 * 11 10 9 13 13 C 1.37864 * 120.02144 * 259.97688 * 12 11 10 14 14 C 1.38716 * 120.69457 * 180.08936 * 13 12 11 15 15 C 1.37768 * 120.27215 * 359.90206 * 14 13 12 16 16 C 1.39382 * 119.60055 * 0.06669 * 15 14 13 17 17 C 1.46786 * 134.34084 * 179.97438 * 16 15 14 18 18 C 1.33997 * 106.18015 * 180.02562 * 17 16 15 19 19 O 1.34445 * 110.16312 * 359.97438 * 18 17 16 20 20 C 1.34839 * 110.89648 * 0.02562 * 19 18 17 21 21 C 1.46896 * 111.00164 * 199.50533 * 10 9 7 22 22 C 1.52996 * 109.47521 * 71.64485 * 21 10 9 23 23 C 1.53002 * 117.50374 * 244.15285 * 22 21 10 24 24 C 1.52999 * 117.50306 * 175.48631 * 22 21 10 25 25 H 0.97005 * 119.99750 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47399 * 55.66357 * 9 7 2 27 27 H 1.08999 * 109.47793 * 295.65781 * 9 7 2 28 28 H 1.09000 * 109.47101 * 70.00138 * 11 10 9 29 29 H 1.08995 * 109.46876 * 310.00321 * 11 10 9 30 30 H 1.08001 * 119.65452 * 0.02562 * 13 12 11 31 31 H 1.07995 * 119.86483 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.19424 * 180.33862 * 15 14 13 33 33 H 1.07995 * 126.91449 * 359.97438 * 17 16 15 34 34 H 1.08002 * 124.92103 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47235 * 191.64748 * 21 10 9 36 36 H 1.09007 * 109.47261 * 311.64426 * 21 10 9 37 37 H 1.09001 * 115.54515 * 29.81921 * 22 21 10 38 38 H 1.09002 * 117.49773 * 359.97438 * 23 22 21 39 39 H 1.08993 * 117.50009 * 145.01626 * 23 22 21 40 40 H 1.08992 * 117.50123 * 214.98141 * 24 22 21 41 41 H 1.08994 * 117.49727 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2021 -3.6138 -0.1060 11 6 2.8903 -3.8412 1.1718 12 6 4.0217 -4.8152 0.9664 13 6 3.8604 -6.1414 1.3067 14 6 4.8931 -7.0496 1.1254 15 6 6.0972 -6.6361 0.5989 16 6 6.2729 -5.2981 0.2501 17 6 7.3824 -4.5233 -0.3184 18 6 6.9411 -3.2627 -0.4256 19 8 5.6744 -3.1759 0.0164 20 6 5.2276 -4.3775 0.4345 21 6 1.5312 -4.8364 -0.5675 22 6 1.1656 -4.6905 -2.0460 23 6 -0.3205 -4.6910 -2.4097 24 6 0.5503 -5.9046 -2.7448 25 1 -0.4850 0.8401 0.0004 26 1 0.5669 -2.5238 -0.8489 27 1 0.6843 -2.5916 0.9259 28 1 2.1858 -4.2500 1.8961 29 1 3.2870 -2.8967 1.5439 30 1 2.9205 -6.4766 1.7198 31 1 4.7523 -8.0854 1.3970 32 1 6.8985 -7.3454 0.4531 33 1 8.3585 -4.8944 -0.5940 34 1 7.5190 -2.4361 -0.8120 35 1 2.2000 -5.6877 -0.4409 36 1 0.6250 -4.9963 0.0168 37 1 1.8273 -4.0536 -2.6332 38 1 -1.0378 -4.7957 -1.5957 39 1 -0.6365 -4.0548 -3.2364 40 1 0.8067 -6.0662 -3.7917 41 1 0.4055 -6.8071 -2.1511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449023051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = 40.782108 kcal Electronic energy + Delta-G solvation = -22455.759985 eV Core-core repulsion = 19302.139999 eV Total energy + Delta-G solvation = -3153.619986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.25317 -39.73311 -38.51273 -36.91223 -34.78720 -33.59777 -31.74134 -30.25232 -29.46237 -27.93382 -25.71549 -23.80669 -23.20241 -23.15757 -22.80197 -21.39308 -20.96687 -18.57309 -18.20021 -17.90960 -17.07517 -16.86640 -16.49690 -16.42544 -15.90492 -15.48439 -15.29212 -14.78750 -14.48143 -14.20824 -13.94502 -13.50084 -13.45959 -13.30028 -13.16906 -12.94270 -12.70178 -12.59112 -12.45998 -12.35723 -12.20736 -12.04972 -11.58796 -11.41905 -11.15352 -10.94020 -10.68509 -10.56635 -9.44412 -9.08717 -8.92324 -8.18727 -6.27350 0.02784 0.50907 1.36877 1.38461 1.49845 1.53389 2.11154 2.39509 2.76366 2.94406 3.12367 3.37675 3.61301 3.73145 3.91205 4.03626 4.08372 4.13544 4.24279 4.32642 4.48276 4.51720 4.53683 4.61556 4.68191 4.74002 4.77300 4.82579 4.86317 5.00784 5.03621 5.17789 5.24459 5.28534 5.38060 5.40071 5.50917 5.56169 5.61396 5.68670 5.87148 6.10315 6.34392 6.40439 6.65767 6.87706 7.41041 8.91523 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.006524 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.693085 B = 4291.061429 C = 5859.655616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.213 3.787 10 N -0.534 5.534 11 C 0.107 3.893 12 C -0.077 4.077 13 C -0.097 4.097 14 C -0.129 4.129 15 C -0.078 4.078 16 C -0.152 4.152 17 C -0.216 4.216 18 C -0.006 4.006 19 O -0.218 6.218 20 C 0.043 3.957 21 C 0.090 3.910 22 C -0.157 4.157 23 C -0.189 4.189 24 C -0.148 4.148 25 H 0.263 0.737 26 H 0.018 0.982 27 H -0.042 1.042 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.189 0.811 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -15.591 -0.682 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.087 3.913 10 N -0.258 5.258 11 C -0.021 4.021 12 C -0.078 4.078 13 C -0.115 4.115 14 C -0.146 4.146 15 C -0.096 4.096 16 C -0.153 4.153 17 C -0.235 4.235 18 C -0.071 4.071 19 O -0.119 6.119 20 C -0.004 4.004 21 C -0.038 4.038 22 C -0.176 4.176 23 C -0.227 4.227 24 C -0.185 4.185 25 H 0.072 0.928 26 H 0.036 0.964 27 H -0.024 1.024 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.182 0.818 32 H 0.174 0.826 33 H 0.206 0.794 34 H 0.251 0.749 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.688 -15.094 -1.010 19.117 hybrid contribution -0.600 1.350 0.569 1.583 sum 11.088 -13.744 -0.441 17.665 Atomic orbital electron populations 1.70079 1.07447 1.27663 1.52142 1.25818 0.95715 1.02772 0.95067 0.85489 0.78561 0.78798 0.78431 1.19855 1.20438 1.19374 1.21429 0.93231 0.91385 1.49403 0.92923 1.19365 0.89998 0.88486 0.93459 1.62018 1.30701 1.05309 1.27765 1.20747 0.93370 0.97093 0.90853 1.18901 0.91337 0.95366 1.02220 1.21088 1.00653 0.90186 0.99608 1.21327 0.92162 1.00841 1.00316 1.20873 0.98696 0.92711 0.97317 1.20406 0.94212 0.95741 1.04925 1.22824 1.00691 0.92468 1.07506 1.24783 0.82205 1.00792 0.99286 1.84140 1.29053 1.32192 1.66523 1.19723 0.96112 0.83567 1.01047 1.21651 0.96310 0.92817 0.93046 1.22129 0.96152 1.02925 0.96350 1.23001 0.93567 1.02713 1.03378 1.23035 1.01835 0.91962 1.01641 0.92779 0.96408 1.02428 0.94441 0.92621 0.83733 0.81794 0.82578 0.79417 0.74892 0.89639 0.96152 0.89912 0.89584 0.89452 0.87428 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 46.40 29.54 68.60 2.03 48.43 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.52 -30.94 8.60 25.60 0.22 -30.72 16 8 H 0.05 3.21 7.66 -2.91 -0.02 3.19 16 9 C 0.21 11.88 4.59 85.55 0.39 12.27 16 10 N -0.53 -24.73 4.38 -905.38 -3.96 -28.69 16 11 C 0.11 4.52 4.93 85.56 0.42 4.95 16 12 C -0.08 -2.74 4.64 -19.80 -0.09 -2.83 16 13 C -0.10 -2.60 8.29 22.30 0.18 -2.41 16 14 C -0.13 -2.73 10.03 22.27 0.22 -2.50 16 15 C -0.08 -1.75 10.10 22.43 0.23 -1.53 16 16 C -0.15 -4.42 6.40 -20.21 -0.13 -4.55 16 17 C -0.22 -5.24 11.14 23.54 0.26 -4.98 16 18 C -0.01 -0.17 11.96 66.85 0.80 0.63 16 19 O -0.22 -8.44 10.58 -9.20 -0.10 -8.54 16 20 C 0.04 1.58 7.11 22.98 0.16 1.74 16 21 C 0.09 3.43 5.10 86.30 0.44 3.87 16 22 C -0.16 -5.76 4.96 -10.79 -0.05 -5.81 16 23 C -0.19 -6.35 9.97 30.62 0.31 -6.04 16 24 C -0.15 -3.99 10.26 30.62 0.31 -3.68 16 25 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 26 H 0.02 1.06 6.94 -2.38 -0.02 1.04 16 27 H -0.04 -2.51 8.00 -2.39 -0.02 -2.53 16 28 H 0.04 1.49 7.97 -2.39 -0.02 1.47 16 29 H 0.06 2.69 7.31 -2.39 -0.02 2.68 16 30 H 0.14 3.28 8.02 -2.91 -0.02 3.26 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.23 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.09 2.89 5.88 -2.39 -0.01 2.88 16 36 H 0.02 0.78 7.79 -2.38 -0.02 0.76 16 37 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.63 343.36 3.40 -70.22 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.01 Total: 16.88 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 4.14 Total: -40.90 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -3.68 Total: -86.09 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.10 Total: -8.54 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -73.63 3.40 -70.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449023051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.005 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds