Wall clock time and date at job start Tue Mar 31 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48501 * 109.46778 * 239.99811 * 3 2 1 5 5 H 1.48501 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47101 * 120.00228 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 160.55171 * 7 2 1 9 9 N 1.36936 * 119.99906 * 340.55797 * 7 2 1 10 10 C 1.46498 * 120.00304 * 320.84013 * 9 7 2 11 11 C 1.50698 * 109.47161 * 270.00138 * 10 9 7 12 12 C 1.37859 * 120.01992 * 259.99821 * 11 10 9 13 13 C 1.38717 * 120.69037 * 179.97438 * 12 11 10 14 14 C 1.37763 * 120.27715 * 0.02562 * 13 12 11 15 15 C 1.39384 * 119.59974 * 0.02562 * 14 13 12 16 16 C 1.46781 * 134.34890 * 179.97438 * 15 14 13 17 17 C 1.33991 * 106.18927 * 179.97438 * 16 15 14 18 18 O 1.34446 * 110.15921 * 359.97438 * 17 16 15 19 19 C 1.34846 * 110.89391 * 359.73817 * 18 17 16 20 20 C 1.46503 * 119.99912 * 140.83973 * 9 7 2 21 21 C 1.55232 * 110.57973 * 60.09018 * 20 9 7 22 22 C 1.54895 * 102.59006 * 203.33673 * 21 20 9 23 23 C 1.54268 * 104.31018 * 37.93072 * 22 21 20 24 24 C 1.53874 * 106.59858 * 336.32476 * 23 22 21 25 25 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46632 * 30.00284 * 10 9 7 27 27 H 1.08996 * 109.47300 * 149.99951 * 10 9 7 28 28 H 1.07993 * 119.65638 * 359.97371 * 12 11 10 29 29 H 1.07995 * 119.86439 * 179.97438 * 13 12 11 30 30 H 1.07997 * 120.20252 * 179.97438 * 14 13 12 31 31 H 1.08001 * 126.90780 * 359.97438 * 16 15 14 32 32 H 1.07995 * 124.92135 * 180.02562 * 17 16 15 33 33 H 1.09003 * 110.43702 * 182.67514 * 20 9 7 34 34 H 1.09005 * 110.90096 * 85.04679 * 21 20 9 35 35 H 1.08999 * 110.77170 * 321.56743 * 21 20 9 36 36 H 1.09002 * 110.48653 * 279.18868 * 22 21 20 37 37 H 1.09002 * 110.48722 * 156.67713 * 22 21 20 38 38 H 1.09001 * 110.02657 * 95.61064 * 23 22 21 39 39 H 1.08994 * 110.03083 * 216.99215 * 23 22 21 40 40 H 1.09008 * 110.02820 * 119.28285 * 24 23 22 41 41 H 1.08994 * 110.03345 * 240.66252 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0440 -1.2289 -0.3109 9 7 1.3841 -2.3540 0.3958 10 6 0.4525 -2.3306 1.5261 11 6 1.2055 -2.6002 2.8034 12 6 1.1847 -3.8597 3.3636 13 6 1.8732 -4.1234 4.5386 14 6 2.5889 -3.1256 5.1631 15 6 2.6171 -1.8475 4.6076 16 6 3.2526 -0.5790 4.9838 17 6 2.9067 0.3065 4.0397 18 8 2.1240 -0.2809 3.1178 19 6 1.9259 -1.5816 3.4135 20 6 1.6460 -3.6098 -0.3118 21 6 3.1517 -3.9785 -0.2301 22 6 3.3408 -4.9002 -1.4605 23 6 2.4549 -4.2654 -2.5522 24 6 1.3772 -3.4450 -1.8219 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0233 -1.3517 1.5845 27 1 -0.3095 -3.0971 1.3849 28 1 0.6265 -4.6492 2.8827 29 1 1.8474 -5.1148 4.9660 30 1 3.1241 -3.3321 6.0781 31 1 3.8741 -0.3962 5.8480 32 1 3.2130 1.3420 4.0213 33 1 1.0341 -4.4129 0.0991 34 1 3.3709 -4.5160 0.6925 35 1 3.7731 -3.0872 -0.3160 36 1 3.0026 -5.9116 -1.2351 37 1 4.3849 -4.9090 -1.7737 38 1 3.0545 -3.6130 -3.1870 39 1 1.9877 -5.0450 -3.1539 40 1 1.4539 -2.3944 -2.1023 41 1 0.3864 -3.8258 -2.0693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449026772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:12 Heat of formation + Delta-G solvation = 28.177373 kcal Electronic energy + Delta-G solvation = -23370.777847 eV Core-core repulsion = 20216.611279 eV Total energy + Delta-G solvation = -3154.166568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.11180 -39.45382 -38.50760 -36.17891 -33.82016 -32.78649 -31.39149 -30.09721 -29.33296 -28.23027 -27.34463 -24.50608 -23.31678 -22.99289 -21.34688 -21.20580 -20.72983 -18.35454 -18.07614 -17.67243 -16.99355 -16.83234 -16.42780 -16.26512 -15.89161 -15.06200 -14.88280 -14.69828 -14.31847 -14.05741 -13.84468 -13.39505 -13.26013 -13.06832 -12.86768 -12.81754 -12.60103 -12.40789 -12.25018 -11.91101 -11.81591 -11.77261 -11.73771 -11.57237 -11.19958 -11.09353 -10.81386 -10.41393 -9.31698 -8.88696 -8.43531 -7.75493 -5.36731 0.16627 0.64793 1.40259 1.43943 1.50097 1.60295 2.25412 2.54723 2.93721 3.35855 3.69669 3.75172 3.90954 4.00990 4.04983 4.21039 4.32717 4.39419 4.46707 4.60759 4.66229 4.70299 4.76430 4.79092 4.87984 4.92913 4.94385 4.98881 5.15906 5.21906 5.26183 5.33423 5.44150 5.55967 5.59266 5.62760 5.65180 5.69075 5.69544 5.80211 5.87296 6.00397 6.50207 6.57565 7.25571 7.94527 8.46612 9.20007 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.008945 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.423216 B = 3129.535521 C = 4569.653140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.011 4.011 3 Si 0.930 3.070 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.234 4.234 8 H 0.038 0.962 9 N -0.577 5.577 10 C 0.182 3.818 11 C -0.088 4.088 12 C -0.108 4.108 13 C -0.131 4.131 14 C -0.094 4.094 15 C -0.160 4.160 16 C -0.217 4.217 17 C -0.019 4.019 18 O -0.202 6.202 19 C 0.045 3.955 20 C 0.166 3.834 21 C -0.127 4.127 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.129 4.129 25 H 0.247 0.753 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.186 0.814 32 H 0.221 0.779 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 -8.276 7.534 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.759 3.241 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.056 0.944 9 N -0.295 5.295 10 C 0.056 3.944 11 C -0.091 4.091 12 C -0.127 4.127 13 C -0.148 4.148 14 C -0.112 4.112 15 C -0.160 4.160 16 C -0.235 4.235 17 C -0.084 4.084 18 O -0.102 6.102 19 C -0.003 4.003 20 C 0.059 3.941 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.168 4.168 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.168 0.832 31 H 0.203 0.797 32 H 0.237 0.763 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.158 -8.003 7.249 11.967 hybrid contribution 0.283 1.628 -0.157 1.660 sum 5.442 -6.375 7.092 10.980 Atomic orbital electron populations 1.70053 1.06566 1.25479 1.53651 1.25494 0.95199 1.00351 0.99864 0.85933 0.78519 0.81303 0.78371 1.21140 1.22267 1.19463 1.18628 0.92256 0.86136 1.39393 0.94404 1.43884 1.51017 1.04443 1.30143 1.19761 0.90388 1.01206 0.83035 1.20123 0.99718 0.91408 0.97896 1.21015 1.00663 0.94261 0.96716 1.21281 0.97829 1.00215 0.95505 1.20722 0.99961 0.89923 1.00619 1.20417 1.02302 0.96739 0.96587 1.22732 1.06789 0.90825 1.03194 1.24593 0.94718 1.00350 0.88745 1.84217 1.57890 1.21751 1.46386 1.19800 1.00964 0.83516 0.95979 1.21515 0.94149 0.87440 0.90977 1.22800 0.98161 0.98091 0.97617 1.22241 0.99511 0.98672 0.94435 1.22022 0.96775 0.98701 0.97632 1.22409 0.97727 0.99554 0.97134 0.94393 0.91678 0.94082 0.84183 0.82338 0.83210 0.79722 0.76262 0.91895 0.92750 0.94279 0.90249 0.91418 0.93074 0.90630 0.94048 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.83 11.46 21.65 0.25 -53.59 16 2 C -0.01 -0.64 4.99 84.86 0.42 -0.22 16 3 Si 0.93 45.80 29.60 68.60 2.03 47.83 16 4 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.23 -12.79 7.74 84.03 0.65 -12.14 16 8 H 0.04 2.18 6.72 -2.91 -0.02 2.16 16 9 N -0.58 -28.44 2.44 -675.72 -1.65 -30.09 16 10 C 0.18 8.78 5.41 85.63 0.46 9.24 16 11 C -0.09 -3.76 5.47 -19.80 -0.11 -3.87 16 12 C -0.11 -3.63 9.64 22.29 0.21 -3.41 16 13 C -0.13 -3.64 10.03 22.27 0.22 -3.42 16 14 C -0.09 -2.77 10.10 22.43 0.23 -2.54 16 15 C -0.16 -5.80 6.40 -20.21 -0.13 -5.93 16 16 C -0.22 -6.81 11.14 23.54 0.26 -6.55 16 17 C -0.02 -0.67 11.96 66.85 0.80 0.13 16 18 O -0.20 -9.35 10.58 -9.28 -0.10 -9.45 16 19 C 0.05 1.99 7.11 22.98 0.16 2.15 16 20 C 0.17 6.88 3.39 46.19 0.16 7.04 16 21 C -0.13 -4.75 6.47 32.01 0.21 -4.54 16 22 C -0.11 -3.24 6.82 31.67 0.22 -3.02 16 23 C -0.11 -3.58 6.80 31.32 0.21 -3.37 16 24 C -0.13 -5.21 6.41 31.32 0.20 -5.01 16 25 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.07 3.68 5.56 -2.39 -0.01 3.67 16 27 H 0.04 1.84 7.78 -2.39 -0.02 1.83 16 28 H 0.14 4.07 8.02 -2.91 -0.02 4.04 16 29 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.22 6.01 8.06 -2.91 -0.02 5.99 16 33 H 0.06 2.42 7.84 -2.39 -0.02 2.40 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.04 1.68 6.63 -2.39 -0.02 1.67 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.04 2.02 6.92 -2.38 -0.02 2.00 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -66.75 334.14 5.73 -61.02 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.01 Total: 19.72 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.18 Total: -35.45 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.40 Total: -83.67 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.10 Total: -9.45 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.75 5.73 -61.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449026772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.197 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds