Wall clock time and date at job start Tue Mar 31 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48501 * 109.46938 * 239.99571 * 3 2 1 5 5 H 1.48494 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47052 * 120.00034 * 3 2 1 7 7 C 1.37873 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00534 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99707 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.66895 * 61.77911 * 9 7 2 11 11 C 1.54893 * 110.75769 * 298.54894 * 9 7 2 12 12 C 1.54265 * 104.19597 * 203.73881 * 11 9 7 13 13 C 1.53873 * 106.59723 * 23.61063 * 12 11 9 14 14 H 1.09000 * 110.03297 * 240.66446 * 13 12 11 15 15 N 1.46906 * 110.03251 * 119.28193 * 13 12 11 16 16 C 1.46895 * 110.99647 * 86.45479 * 15 13 12 17 17 C 1.50708 * 109.47207 * 180.02562 * 16 15 13 18 18 C 1.37860 * 120.01928 * 259.72424 * 17 16 15 19 19 C 1.38724 * 120.69061 * 179.75813 * 18 17 16 20 20 C 1.37757 * 120.27465 * 0.51737 * 19 18 17 21 21 C 1.39386 * 119.60011 * 359.74244 * 20 19 18 22 22 C 1.46778 * 134.34688 * 180.02562 * 21 20 19 23 23 C 1.33986 * 106.18885 * 180.02562 * 22 21 20 24 24 O 1.34447 * 110.16079 * 359.97438 * 23 22 21 25 25 C 1.34835 * 110.89511 * 359.97438 * 24 23 22 26 26 C 1.54270 * 106.60113 * 359.97438 * 13 12 11 27 27 H 0.97012 * 119.99935 * 359.97438 * 1 2 3 28 28 H 1.09010 * 110.48474 * 85.06601 * 11 9 7 29 29 H 1.08998 * 110.48270 * 322.41980 * 11 9 7 30 30 H 1.08996 * 110.03564 * 264.32825 * 12 11 9 31 31 H 1.09003 * 110.03346 * 142.89429 * 12 11 9 32 32 H 1.00897 * 111.00022 * 322.49785 * 15 13 12 33 33 H 1.08995 * 109.47610 * 299.99785 * 16 15 13 34 34 H 1.08999 * 109.47439 * 60.00078 * 16 15 13 35 35 H 1.08000 * 119.65667 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.85884 * 180.25850 * 19 18 17 37 37 H 1.07993 * 120.20022 * 179.72611 * 20 19 18 38 38 H 1.08006 * 126.90643 * 0.02562 * 22 21 20 39 39 H 1.08004 * 124.92514 * 179.97438 * 23 22 21 40 40 H 1.08998 * 110.48293 * 95.06474 * 26 13 12 41 41 H 1.09001 * 110.49024 * 217.71205 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6406 -2.5910 -0.8990 11 6 0.3776 -2.6287 1.2721 12 6 0.1829 -4.1493 1.4441 13 6 1.3580 -4.8277 0.7183 14 1 0.9840 -5.4664 -0.0819 15 7 2.1455 -5.6230 1.6698 16 6 1.5873 -6.9739 1.8154 17 6 2.4191 -7.7582 2.7974 18 6 3.3547 -8.6622 2.3414 19 6 4.1314 -9.3878 3.2329 20 6 3.9692 -9.2210 4.5907 21 6 3.0230 -8.3139 5.0647 22 6 2.5896 -7.8877 6.4007 23 6 1.6288 -6.9739 6.2079 24 8 1.4223 -6.7892 4.8923 25 6 2.2400 -7.5744 4.1623 26 6 2.2254 -3.6957 0.1300 27 1 -0.4851 0.8402 0.0004 28 1 -0.5835 -2.1351 1.1270 29 1 0.8961 -2.2104 2.1348 30 1 -0.7612 -4.4581 0.9955 31 1 0.1970 -4.4103 2.5023 32 1 2.2082 -5.1594 2.5638 33 1 0.5625 -6.9063 2.1806 34 1 1.5959 -7.4768 0.8484 35 1 3.4868 -8.8045 1.2790 36 1 4.8632 -10.0895 2.8608 37 1 4.5714 -9.7897 5.2836 38 1 2.9688 -8.2399 7.3487 39 1 1.0972 -6.4601 6.9952 40 1 3.0423 -3.4494 0.8083 41 1 2.6130 -3.9810 -0.8480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:10 Heat of formation + Delta-G solvation = 16.211485 kcal Electronic energy + Delta-G solvation = -21774.289705 eV Core-core repulsion = 18619.604257 eV Total energy + Delta-G solvation = -3154.685448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.50951 -38.41620 -37.58040 -34.69606 -32.83259 -31.89016 -30.38305 -29.44527 -27.98051 -26.87888 -24.70263 -23.37785 -22.67943 -22.38538 -20.68516 -19.28619 -19.09946 -17.47543 -17.11520 -16.34136 -16.15002 -15.82346 -15.24889 -14.57552 -14.42440 -14.37221 -13.70597 -13.45567 -13.11444 -12.85230 -12.79314 -12.31478 -12.23251 -12.05867 -11.93546 -11.56077 -11.04402 -10.93813 -10.85179 -10.62761 -10.49212 -10.25595 -9.98329 -9.73657 -9.46485 -9.05527 -8.71910 -8.68441 -8.30460 -8.27966 -7.90231 -5.93857 -3.96318 0.80830 1.27678 2.25154 2.72970 3.36448 3.40607 3.43758 3.58329 4.33274 4.45598 4.49894 4.71108 4.81349 4.94751 5.10022 5.22500 5.30153 5.37590 5.42617 5.50896 5.59670 5.71903 5.75477 5.82435 5.92155 6.10647 6.24553 6.29823 6.33392 6.40253 6.55553 6.58662 6.73944 6.79957 6.89332 7.07176 7.11860 7.20295 7.41277 7.60828 7.76599 7.79010 7.98640 8.11660 8.54133 9.06163 9.67346 11.15306 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.003424 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.417439 B = 8174.811949 C = 8489.354257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.028 0.972 11 C -0.097 4.097 12 C -0.155 4.155 13 C 0.083 3.917 14 H 0.066 0.934 15 N -0.676 5.676 16 C 0.096 3.904 17 C -0.059 4.059 18 C -0.080 4.080 19 C -0.134 4.134 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.217 4.217 23 C 0.010 3.990 24 O -0.192 6.192 25 C 0.057 3.943 26 C -0.101 4.101 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.341 0.659 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -19.093 10.480 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.046 0.954 11 C -0.135 4.135 12 C -0.194 4.194 13 C -0.026 4.026 14 H 0.084 0.916 15 N -0.307 5.307 16 C -0.033 4.033 17 C -0.060 4.060 18 C -0.099 4.099 19 C -0.152 4.152 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.236 4.236 23 C -0.055 4.055 24 O -0.093 6.093 25 C 0.010 3.990 26 C -0.140 4.140 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.159 0.841 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.173 0.827 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.916 -18.979 9.872 21.749 hybrid contribution -0.317 1.053 0.904 1.424 sum 3.599 -17.926 10.776 21.223 Atomic orbital electron populations 1.69957 1.05867 1.26362 1.50858 1.24976 0.94822 0.98943 0.95230 0.86716 0.79623 0.83390 0.78584 1.20316 1.21431 1.20355 1.21118 0.92807 0.90562 1.50419 0.92708 1.19581 0.92249 0.91605 0.93657 0.95431 1.22239 1.01450 0.90064 0.99778 1.22981 0.97922 1.00314 0.98212 1.22370 0.92506 0.94277 0.93494 0.91556 1.60836 1.53089 1.01756 1.15021 1.20866 0.94658 0.90554 0.97181 1.18810 0.99628 0.99126 0.88447 1.20849 0.93971 0.94875 1.00200 1.21008 1.00556 1.00967 0.92690 1.20473 0.96771 0.97013 0.95504 1.19936 1.00032 1.00596 0.92839 1.22476 1.01640 1.02488 0.96984 1.23988 0.99227 0.99274 0.83012 1.84057 1.53052 1.55043 1.17151 1.19498 0.92976 0.93729 0.92825 1.22432 0.98533 0.94452 0.98534 0.93165 0.91573 0.93664 0.93278 0.93717 0.84068 0.94409 0.90040 0.84659 0.85357 0.85773 0.82657 0.77719 0.92025 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 12.02 55.43 0.67 -25.32 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.31 8.54 -34.44 -0.29 -14.60 16 8 H 0.05 1.52 7.78 -52.49 -0.41 1.11 16 9 C 0.05 1.21 2.82 -89.79 -0.25 0.96 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.10 -2.31 5.57 -25.07 -0.14 -2.45 16 12 C -0.16 -3.01 6.37 -25.61 -0.16 -3.18 16 13 C 0.08 1.52 3.23 -66.59 -0.21 1.31 16 14 H 0.07 1.16 7.83 -51.93 -0.41 0.75 16 15 N -0.68 -11.16 6.19 -106.80 -0.66 -11.82 16 16 C 0.10 1.35 5.65 -4.98 -0.03 1.32 16 17 C -0.06 -0.79 5.40 -104.52 -0.56 -1.35 16 18 C -0.08 -0.91 9.64 -39.54 -0.38 -1.29 16 19 C -0.13 -1.35 10.03 -39.58 -0.40 -1.74 16 20 C -0.08 -0.84 10.10 -39.33 -0.40 -1.23 16 21 C -0.13 -1.64 6.40 -105.16 -0.67 -2.32 16 22 C -0.22 -2.21 11.14 -37.63 -0.42 -2.63 16 23 C 0.01 0.10 11.96 29.24 0.35 0.45 16 24 O -0.19 -2.63 10.58 3.84 0.04 -2.59 16 25 C 0.06 0.80 7.11 -38.49 -0.27 0.52 16 26 C -0.10 -2.17 5.95 -25.08 -0.15 -2.32 16 27 H 0.26 7.22 8.31 -40.81 -0.34 6.88 16 28 H 0.07 1.72 7.38 -51.92 -0.38 1.33 16 29 H 0.04 1.12 8.04 -51.93 -0.42 0.71 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.82 7.59 -51.93 -0.39 0.43 16 32 H 0.34 5.91 8.18 -39.29 -0.32 5.59 16 33 H 0.04 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 35 H 0.14 1.29 8.02 -52.49 -0.42 0.86 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.21 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.06 1.37 7.95 -51.93 -0.41 0.96 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -30.68 338.62 -10.06 -40.74 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.09 Total: 4.17 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -4.09 Total: -26.92 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.01 Total: -37.14 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.68 -10.06 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.949 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds