Wall clock time and date at job start Tue Mar 31 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48501 * 109.46938 * 239.99571 * 3 2 1 5 5 H 1.48494 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47052 * 120.00034 * 3 2 1 7 7 C 1.37873 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00534 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99707 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.66895 * 61.77911 * 9 7 2 11 11 C 1.54893 * 110.75769 * 298.54894 * 9 7 2 12 12 C 1.54265 * 104.19597 * 203.73881 * 11 9 7 13 13 C 1.53873 * 106.59723 * 23.61063 * 12 11 9 14 14 H 1.09000 * 110.03297 * 240.66446 * 13 12 11 15 15 N 1.46906 * 110.03251 * 119.28193 * 13 12 11 16 16 C 1.46895 * 110.99647 * 86.45479 * 15 13 12 17 17 C 1.50708 * 109.47207 * 180.02562 * 16 15 13 18 18 C 1.37860 * 120.01928 * 259.72424 * 17 16 15 19 19 C 1.38724 * 120.69061 * 179.75813 * 18 17 16 20 20 C 1.37757 * 120.27465 * 0.51737 * 19 18 17 21 21 C 1.39386 * 119.60011 * 359.74244 * 20 19 18 22 22 C 1.46778 * 134.34688 * 180.02562 * 21 20 19 23 23 C 1.33986 * 106.18885 * 180.02562 * 22 21 20 24 24 O 1.34447 * 110.16079 * 359.97438 * 23 22 21 25 25 C 1.34835 * 110.89511 * 359.97438 * 24 23 22 26 26 C 1.54270 * 106.60113 * 359.97438 * 13 12 11 27 27 H 0.97012 * 119.99935 * 359.97438 * 1 2 3 28 28 H 1.09010 * 110.48474 * 85.06601 * 11 9 7 29 29 H 1.08998 * 110.48270 * 322.41980 * 11 9 7 30 30 H 1.08996 * 110.03564 * 264.32825 * 12 11 9 31 31 H 1.09003 * 110.03346 * 142.89429 * 12 11 9 32 32 H 1.00897 * 111.00022 * 322.49785 * 15 13 12 33 33 H 1.08995 * 109.47610 * 299.99785 * 16 15 13 34 34 H 1.08999 * 109.47439 * 60.00078 * 16 15 13 35 35 H 1.08000 * 119.65667 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.85884 * 180.25850 * 19 18 17 37 37 H 1.07993 * 120.20022 * 179.72611 * 20 19 18 38 38 H 1.08006 * 126.90643 * 0.02562 * 22 21 20 39 39 H 1.08004 * 124.92514 * 179.97438 * 23 22 21 40 40 H 1.08998 * 110.48293 * 95.06474 * 26 13 12 41 41 H 1.09001 * 110.49024 * 217.71205 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6406 -2.5910 -0.8990 11 6 0.3776 -2.6287 1.2721 12 6 0.1829 -4.1493 1.4441 13 6 1.3580 -4.8277 0.7183 14 1 0.9840 -5.4664 -0.0819 15 7 2.1455 -5.6230 1.6698 16 6 1.5873 -6.9739 1.8154 17 6 2.4191 -7.7582 2.7974 18 6 3.3547 -8.6622 2.3414 19 6 4.1314 -9.3878 3.2329 20 6 3.9692 -9.2210 4.5907 21 6 3.0230 -8.3139 5.0647 22 6 2.5896 -7.8877 6.4007 23 6 1.6288 -6.9739 6.2079 24 8 1.4223 -6.7892 4.8923 25 6 2.2400 -7.5744 4.1623 26 6 2.2254 -3.6957 0.1300 27 1 -0.4851 0.8402 0.0004 28 1 -0.5835 -2.1351 1.1270 29 1 0.8961 -2.2104 2.1348 30 1 -0.7612 -4.4581 0.9955 31 1 0.1970 -4.4103 2.5023 32 1 2.2082 -5.1594 2.5638 33 1 0.5625 -6.9063 2.1806 34 1 1.5959 -7.4768 0.8484 35 1 3.4868 -8.8045 1.2790 36 1 4.8632 -10.0895 2.8608 37 1 4.5714 -9.7897 5.2836 38 1 2.9688 -8.2399 7.3487 39 1 1.0972 -6.4601 6.9952 40 1 3.0423 -3.4494 0.8083 41 1 2.6130 -3.9810 -0.8480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:10 Heat of formation + Delta-G solvation = -0.893188 kcal Electronic energy + Delta-G solvation = -21775.031419 eV Core-core repulsion = 18619.604257 eV Total energy + Delta-G solvation = -3155.427162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.34704 -39.69075 -38.79218 -36.10243 -34.38817 -33.22007 -31.49122 -30.26572 -29.81472 -28.44626 -26.18767 -25.04887 -23.57193 -23.21054 -21.60710 -21.06491 -20.81495 -18.40741 -18.30178 -17.92672 -17.15886 -16.92232 -16.56674 -16.39129 -15.75910 -15.37369 -15.23411 -14.64196 -14.30347 -14.15578 -13.99296 -13.54748 -13.51820 -13.29428 -13.02947 -12.96495 -12.75874 -12.71042 -12.39353 -12.27521 -12.01942 -11.66127 -11.52273 -11.36575 -11.06234 -10.92310 -10.81223 -10.45357 -9.55966 -9.31695 -9.03543 -8.10254 -6.20350 -0.01557 0.42478 1.41116 1.42730 1.46682 1.50342 1.94875 2.44095 2.71982 3.19558 3.37193 3.58950 3.71732 3.89760 4.03082 4.05079 4.12986 4.25690 4.35290 4.42614 4.53590 4.60321 4.67174 4.72837 4.78969 4.85042 4.93798 5.03102 5.05343 5.14687 5.24678 5.30987 5.39629 5.44145 5.45632 5.53696 5.54810 5.65860 5.78848 5.91076 6.01091 6.18442 6.26022 6.35854 6.43631 6.89723 7.46873 8.97765 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.003424 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.417439 B = 8174.811949 C = 8489.354257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.038 3.962 10 H 0.001 0.999 11 C -0.088 4.088 12 C -0.142 4.142 13 C 0.096 3.904 14 H 0.083 0.917 15 N -0.675 5.675 16 C 0.101 3.899 17 C -0.083 4.083 18 C -0.083 4.083 19 C -0.134 4.134 20 C -0.082 4.082 21 C -0.154 4.154 22 C -0.220 4.220 23 C 0.000 4.000 24 O -0.218 6.218 25 C 0.027 3.973 26 C -0.092 4.092 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.335 0.665 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.184 0.816 39 H 0.240 0.760 40 H 0.051 0.949 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 -20.679 11.301 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.019 3.981 10 H 0.019 0.981 11 C -0.127 4.127 12 C -0.181 4.181 13 C -0.014 4.014 14 H 0.102 0.898 15 N -0.305 5.305 16 C -0.027 4.027 17 C -0.084 4.084 18 C -0.102 4.102 19 C -0.151 4.151 20 C -0.100 4.100 21 C -0.155 4.155 22 C -0.238 4.238 23 C -0.064 4.064 24 O -0.120 6.120 25 C -0.020 4.020 26 C -0.130 4.130 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.288 -20.586 10.695 23.794 hybrid contribution -0.716 1.498 0.678 1.794 sum 4.572 -19.088 11.374 22.685 Atomic orbital electron populations 1.70088 1.07205 1.27136 1.51467 1.25764 0.95685 1.02393 0.94855 0.85695 0.78442 0.79171 0.78857 1.19522 1.20937 1.19765 1.21494 0.92935 0.92157 1.50531 0.93058 1.19572 0.92965 0.92516 0.93012 0.98070 1.22012 0.99300 0.93060 0.98316 1.22861 0.99088 0.96878 0.99319 1.22140 0.91317 0.93748 0.94194 0.89833 1.60772 1.52789 1.02595 1.14321 1.20864 0.94363 0.89155 0.98305 1.18879 1.00868 1.00368 0.88238 1.21164 0.93323 0.94246 1.01444 1.21397 1.00507 1.00829 0.92402 1.20889 0.96257 0.96425 0.96401 1.20387 1.00444 1.01018 0.93648 1.22866 1.01408 1.02214 0.97337 1.24763 0.99638 0.99598 0.82434 1.84024 1.53683 1.55676 1.18645 1.19836 0.93953 0.94720 0.93512 1.22259 0.97689 0.94053 0.98983 0.93172 0.94386 0.95522 0.92252 0.92606 0.84735 0.95182 0.88557 0.83004 0.82277 0.83157 0.79901 0.74390 0.93058 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.86 12.02 21.44 0.26 -54.60 16 2 C 0.01 0.66 5.33 84.65 0.45 1.11 16 3 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -30.52 8.54 25.60 0.22 -30.30 16 8 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 9 C 0.04 1.98 2.82 -10.26 -0.03 1.95 16 10 H 0.00 0.06 8.14 -2.38 -0.02 0.05 16 11 C -0.09 -4.35 5.57 31.67 0.18 -4.17 16 12 C -0.14 -5.51 6.37 31.32 0.20 -5.31 16 13 C 0.10 3.44 3.23 45.64 0.15 3.59 16 14 H 0.08 2.76 7.83 -2.39 -0.02 2.74 16 15 N -0.68 -21.70 6.19 -491.82 -3.04 -24.75 16 16 C 0.10 2.74 5.65 85.56 0.48 3.22 16 17 C -0.08 -2.13 5.40 -19.80 -0.11 -2.24 16 18 C -0.08 -1.72 9.64 22.30 0.21 -1.51 16 19 C -0.13 -2.32 10.03 22.27 0.22 -2.09 16 20 C -0.08 -1.53 10.10 22.43 0.23 -1.30 16 21 C -0.15 -3.60 6.40 -20.21 -0.13 -3.73 16 22 C -0.22 -4.10 11.14 23.54 0.26 -3.84 16 23 C 0.00 -0.01 11.96 66.85 0.80 0.79 16 24 O -0.22 -5.96 10.58 -9.18 -0.10 -6.06 16 25 C 0.03 0.74 7.11 22.98 0.16 0.90 16 26 C -0.09 -3.94 5.95 31.66 0.19 -3.75 16 27 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 28 H 0.04 2.04 7.38 -2.38 -0.02 2.02 16 29 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.04 7.59 -2.39 -0.02 2.02 16 32 H 0.33 11.55 8.18 -89.70 -0.73 10.81 16 33 H 0.03 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.10 2.27 7.92 -2.39 -0.02 2.25 16 35 H 0.15 2.50 8.02 -2.91 -0.02 2.48 16 36 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.24 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.05 2.29 7.95 -2.39 -0.02 2.27 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.76 338.62 2.92 -64.84 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.29 Total: 20.36 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 3.49 Total: -46.66 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -2.79 Total: -79.34 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.10 Total: -6.06 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.76 2.92 -64.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.943 kcal (2) G-P(sol) polarization free energy of solvation -67.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds